LOCUS       NM_001410322            2197 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus clavesin 2 (Clvs2), mRNA.
ACCESSION   NM_001410322
VERSION     NM_001410322.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Katoh,Y., Ritter,B., Gaffry,T., Blondeau,F., Honing,S. and
            McPherson,P.S.
  TITLE     The clavesin family, neuron-specific lipid- and clathrin-binding
            Sec14 proteins regulating lysosomal morphology
  JOURNAL   J Biol Chem 284 (40), 27646-27654 (2009)
   PUBMED   19651769
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.374.1,
                                           SRR26360176.188609.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                JAXUCZ010000001.1  25554777-25554875
            100-609             JAXUCZ010000001.1  25555756-25556265
            610-784             JAXUCZ010000001.1  25580538-25580712
            785-895             JAXUCZ010000001.1  25639012-25639122
            896-1116            JAXUCZ010000001.1  25648664-25648884
            1117-2197           JAXUCZ010000001.1  25660726-25661806
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p12"
     gene            1..2197
                     /gene="Clvs2"
                     /gene_synonym="Clavesin-2; RGD1306801; Rlbp1l2"
                     /note="clavesin 2"
                     /db_xref="GeneID:361459"
                     /db_xref="RGD:1306801"
     exon            1..99
                     /gene="Clvs2"
                     /gene_synonym="Clavesin-2; RGD1306801; Rlbp1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            100..609
                     /gene="Clvs2"
                     /gene_synonym="Clavesin-2; RGD1306801; Rlbp1l2"
                     /inference="alignment:Splign:2.1.0"
     CDS             221..1204
                     /gene="Clvs2"
                     /gene_synonym="Clavesin-2; RGD1306801; Rlbp1l2"
                     /note="Retinaldehyde-binding protein 1-like protein 2;
                     retinaldehyde-binding protein 1-like 2"
                     /codon_start=1
                     /product="clavesin-2"
                     /protein_id="NP_001397251.1"
                     /db_xref="GeneID:361459"
                     /db_xref="RGD:1306801"
                     /translation="MTHLQAGLSPETLEKARLELNENPDTLHQDIQEVRDMVITRPDI
                     GFLRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQALKD
                     GFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVL
                     IIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVIRPFL
                     KEKTRKRIFLHGNNLNSLHQLIHPEILPSEFGGMLPPYDMGTWARTLLDHEYDDDSEY
                     NVDSYSMPVNEVDKELSPKSMKRSQSVVDPTALKRMDKSEEENMQPLLSLD"
     exon            610..784
                     /gene="Clvs2"
                     /gene_synonym="Clavesin-2; RGD1306801; Rlbp1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            785..895
                     /gene="Clvs2"
                     /gene_synonym="Clavesin-2; RGD1306801; Rlbp1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1116
                     /gene="Clvs2"
                     /gene_synonym="Clavesin-2; RGD1306801; Rlbp1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..2197
                     /gene="Clvs2"
                     /gene_synonym="Clavesin-2; RGD1306801; Rlbp1l2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttgatggtg ttgtcgcccc cacggccgct acggaagcca gggctgatgg atgcagggga
       61 gtgccgcatt gcttagcgtc tctgcctctt ggtttgctgg aaaggaagca gcagtgaaga
      121 gactggaggc cagagtgtgg tgtggaggcg acaagtgcca ggtatattat tggacacaca
      181 aagagagagt cagagtggac agcttgggtc caaggggaca atgactcatt tgcaagctgg
      241 tctctctccc gagaccttgg agaaagctcg cctggaactc aatgagaacc cagacactct
      301 gcaccaggac atccaagaag taagggacat ggtcatcact agaccggaca ttggctttct
      361 gcgcacggat gacgctttca ttttacgctt cttgcgggcc aggaaatttc atcacttcga
      421 ggctttccgc ctcttggccc aatactttga gtaccggcag cagaacctgg atatgttcaa
      481 aagcttcaag gccactgacc ctggcatcaa gcaggcactg aaggacggct ttcctggggg
      541 cctggccaat ctggaccact atgggaggaa gattctagtc ctttttgctg ccaactggga
      601 tcagagcagg tatacactgg tggatatttt gcgtgccatt ttactttctt tagaagccat
      661 gattgaagat ccagagcttc aagtaaatgg atttgttttg atcatagact ggagtaactt
      721 taccttcaag caagcttcta agcttacacc aagcatgctg cgacttgcaa ttgaaggtct
      781 tcaggacagc ttccccgcaa gatttggagg aattcatttt gtcaatcaac cttggtatat
      841 ccatgccctg tacactgtga tccgcccatt cctgaaagag aagactcgga aaaggatatt
      901 tttgcatggt aacaacttga acagtctaca ccagctaatt catcctgaga tcctaccttc
      961 tgagtttgga ggaatgttgc cgccctatga catggggaca tgggctcgga ccctgctaga
     1021 ccatgagtat gatgatgaca gcgagtacaa cgtggattcc tatagcatgc ctgtgaatga
     1081 agtggacaag gaactctccc ccaaatccat gaagagatct caatcagtag tggaccctac
     1141 agcactgaaa cgcatggata aaagtgaaga agaaaacatg cagcctttac tttctctgga
     1201 ctgagagatt ttccaccctt acaccatgga ttaaaaatgg gaggtcctgg ctcttaaaac
     1261 agggacagta ctgtgggatt agcctgctga acaactgtat tcatgtttat gtagcataat
     1321 gtttaaggca tctggctttc acatttgcct aaaccatggg tgccctgggc tagattttaa
     1381 aaagtcaata atttattctg taagtgccaa gttctttgta aatacaatat agtcttcata
     1441 tctagtttgt aaattttggt agtaatttaa tttgggaaag attgactcac gggattgagc
     1501 cagtgatatg gactataata ataagcataa gaacacatac atacactata aaatttaatt
     1561 taatgtatcc ttgtttccta tgatgccata tatctgctat catagtgaat tgtttcaatg
     1621 tttttcttta aaacactgtc agtattcaaa catactttgg tcacagcaag gtcaattatt
     1681 tcccagaaat tgttataatt aatgtttttc tgtttagtga tttttctttc agaggaacta
     1741 ttctggaaac atcggtggct acattctgaa gaaaaattgt ggctgatgag ctgggaaacc
     1801 aaaccaaacc tgaactcttc tctgtccttt gatttggagt ttttcaagaa aatgtgtttc
     1861 cccacttaag atgaggaatt ctgaaaaaga atgtgttttt aagttgtttt tgtttgtttg
     1921 tctaaatgcc tgtcttcaca atgttttctt acttaagttc ccattataac ccctgtctga
     1981 tgtacttcag aatatatttc cacccaaatt ctttggcaaa gtaaatgaga atttagtttc
     2041 agagtcattt gacagacaat ttcgaagata aaatttacta cttacagatg tggattaatt
     2101 tcagatcatt gtggaagtgt tgaaaaatat aaatgttcac atatgacata gataatttta
     2161 ttgagttcta ataaactctt gatatgacag cctttaa
//
