LOCUS       NM_001108969            3833 bp    mRNA    linear   ROD 05-FEB-2024
DEFINITION  Rattus norvegicus clavesin 1 (Clvs1), mRNA.
ACCESSION   NM_001108969 XM_001063324 XM_001063373
VERSION     NM_001108969.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3833)
  AUTHORS   Katoh,Y., Ritter,B., Gaffry,T., Blondeau,F., Honing,S. and
            McPherson,P.S.
  TITLE     The clavesin family, neuron-specific lipid- and clathrin-binding
            Sec14 proteins regulating lysosomal morphology
  JOURNAL   J Biol Chem 284 (40), 27646-27654 (2009)
   PUBMED   19651769
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473984.1.
            
            [WARNING] On Mar 20, 2024 this sequence was replaced by
            NM_001108969.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001063324.1, XM_001063373.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: FQ214563.1 [ECO:0000331]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3833
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q13"
     gene            1..3833
                     /gene="Clvs1"
                     /gene_synonym="Clavesin-1; RGD1564200; Rlbp1l1"
                     /note="clavesin 1"
                     /db_xref="GeneID:366311"
                     /db_xref="RGD:1564200"
     exon            1..157
                     /gene="Clvs1"
                     /gene_synonym="Clavesin-1; RGD1564200; Rlbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            158..319
                     /gene="Clvs1"
                     /gene_synonym="Clavesin-1; RGD1564200; Rlbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            320..944
                     /gene="Clvs1"
                     /gene_synonym="Clavesin-1; RGD1564200; Rlbp1l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             490..1554
                     /gene="Clvs1"
                     /gene_synonym="Clavesin-1; RGD1564200; Rlbp1l1"
                     /note="Retinaldehyde-binding protein 1-like protein 1;
                     retinaldehyde-binding protein 1-like 1"
                     /codon_start=1
                     /product="clavesin-1"
                     /protein_id="NP_001102439.1"
                     /db_xref="GeneID:366311"
                     /db_xref="RGD:1564200"
                     /translation="MGPVSVLPKPQSISTWEGDLAKMTHLQAGLSPDTIEKARLELNE
                     NPDVLHQDIQQVRDMIITRPDIGFLRTDDAFILRFLRARKFHQADAFRLLAQYFQYRQ
                     LNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQSRNSFTDILR
                     AILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDSFPARFG
                     GVHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEFLPSEFGGTLP
                     PYDMGTWARTLLGPDYSDENDYTHTSYNAMYVKHTCSNLERECSPKPMKRSQSVVEAG
                     TLKHEEKGENENTQPLLALD"
     exon            945..1119
                     /gene="Clvs1"
                     /gene_synonym="Clavesin-1; RGD1564200; Rlbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1120..1230
                     /gene="Clvs1"
                     /gene_synonym="Clavesin-1; RGD1564200; Rlbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1231..1466
                     /gene="Clvs1"
                     /gene_synonym="Clavesin-1; RGD1564200; Rlbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1467..3833
                     /gene="Clvs1"
                     /gene_synonym="Clavesin-1; RGD1564200; Rlbp1l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccaaatcaca gcccagtgca gcccgggctc tcattcacag ctttctagag aaatctgaga
       61 tccaactgcc agggtagggg atatcaccca cccagttcag ccgcgaggac acctgcagaa
      121 acacattctc aaagcaagcc tgggcggcgg tgtgaagatg actctagctt gtttcattag
      181 cgcctatgtt tctataacaa tgatacctcc cccttcggtt ggttggtgag aagatgttga
      241 tcaggatgtc taagagcgtg gtgagtatag ggatgaattg gaggaaggag gtacacaaag
      301 aaagattcaa ggaatacggt aagcaatggc ttcggttttc cttctctttt ggatggccac
      361 caccacatag ggcctgaatg tcctgctgtt ttccaaggac agaaagaaga ctctgtacct
      421 gtctgtttgg agagcagtct tgtaggagag ccatcgaatg ggccgcggat tcagcacatt
      481 tccatgtgaa tgggaccagt ttctgttctt cccaaacctc agagcataag cacttgggaa
      541 ggagatttgg ccaagatgac acatttgcag gccgggctca gtccagacac gatagagaaa
      601 gctcgcctgg aactgaatga aaacccagat gttttacatc aggacattca acaggtcaga
      661 gacatgatca tcaccaggcc agacattgga tttttacgta cagatgatgc cttcatcctg
      721 cggtttctcc gagccaggaa gtttcaccaa gccgatgcct tcagactcct ggcccagtat
      781 tttcagtacc gccagctaaa cctggacatg ttcaaaaact ttaaggcaga cgatcccggg
      841 attaagaggg ctttgatcga tggattcccc ggagtgttgg aaaatcgtga ccactacggc
      901 aggaagattc tcctgctgtt tgctgccaat tgggatcaga gtaggaactc cttcacagac
      961 atccttcgcg ccattctcct gtccttggaa gtccttatcg aagatcctga gctccagata
     1021 aatggtttca ttttaattat agactggagt aatttttcct tcaaacaagc ctccaagctg
     1081 acaccgtcga tcctgaaact ggccattgaa gggctgcagg acagctttcc tgctcgcttt
     1141 ggaggagtcc attttgtcaa ccagccctgg tacatccatg ccctgtacac gctcatcaag
     1201 ccattcctca aagacaagac aagaaaacgg attttcctac atgggaacaa cttgaacagc
     1261 cttcaccagc taatacaccc tgagtttctg ccctctgaat ttggaggaac tcttcctcct
     1321 tatgacatgg ggacttgggc ccggacatta cttggccctg actacagcga tgaaaatgac
     1381 tatacccaca cttcctacaa tgccatgtat gtgaaacaca cctgctccaa cctggagaga
     1441 gagtgctcgc ccaagcccat gaaaagatct cagtccgtgg tagaagctgg gaccttgaaa
     1501 catgaagaga agggggaaaa cgagaacacc cagccactgc tggctctgga ctgagccagc
     1561 atcatgcgac tcctccagtg gagcagccac ctagcaagcc tgtgccactg acctccagac
     1621 atgtgtgctc tgcttgatat gacgtcctcc attccaggcc cagccatgac tgtcagcagc
     1681 cattggtctg ggcagcccac actggacaag gatctgagag atgcttttaa aatgtaacta
     1741 attaatttat gttttagtga gggatggtgg ggggatgaag aaaggcattt atgtaaaaag
     1801 gattctccct cccctcctat ttatggcagc aaatctactt aaaaaggggg gggggaacct
     1861 aaattagccg catatacatc gctctaagga ttcacacagg aactctctcc aggctttgcg
     1921 aagtaagatg aatgcattcc caaataaata caacagagtt aaactgtgca gacgttgtca
     1981 gtcagcaagc ttaaagtagt cccgaacccc aggcaactgt agctactata atttccagtt
     2041 gtactgactt attttctgac ctcatcacca gcatctaagt gtgctcagcc taagggcgtg
     2101 atctcgcagg tctggctatt cacaacgttt ttaatttaca tatctatccc gcaagaatga
     2161 ttttgacatc atggtgtttg tcaggacttc agctgacttc atgaaccgtg tttttttttt
     2221 tttttttaag aagacacggg gcagtgtgaa aagaatgact gcttcatcat aacaaagtga
     2281 tttcctgtag gcatggctac agagaggagg caactcattg tgtcattgtg actgatgagt
     2341 ccatttaagt tagttcttgg gttactatgg ccaaaaaaaa aaaaaaaaaa aaaaagtgct
     2401 agcaaataag tcactttgtc ccaaccctcc cattacctgt ggagaaaggc tctgaggggg
     2461 cagggagtca aatctcacag gaagacactt aaggatggct cagcatgtaa gtaccaagct
     2521 aaagaggacc aagaatgcaa gatgaaatgc caaagacaac ctatttcctt atccattctc
     2581 ctgagaaatg gaccccagtc cccactcaaa ggaagtcgga aaacatcata gggtaggata
     2641 ttttatctgt gtcatgtttc ccaaggccag ttgagtatac gtaggtatct tattccctag
     2701 ccaactctct gacaaagaca acacttacta atatgaccag agtgcttaat gtcaaaaatt
     2761 ttaattaata acacttatta aaatacttta cattttaagc atttggtagg ttgacttaca
     2821 ccctaaacat cctaaagaaa acaggaaacc aattctactt acttccatcc ataaacacgc
     2881 aaacaacatt gctaattgtg accacttcct tctcttcgtt tctcttctct tattcctgcc
     2941 ctttgctctc ttcctgtctc ccttcctcta ttcccgcctc ttcctctctg tctctttccc
     3001 tgttccttcc tacccttctc ctcctcaccc cttctctttt tcctttgtct ttctttctct
     3061 gtctccctgt tcctctgtct tccctgtatc cctccagtgc tgaagatcaa acccaggacc
     3121 ttgtcctgtc aggcaagtgt tctacccctg agccccgagc tacagcctag atttatactc
     3181 ctttgttgat ctactgtttt atcatttttt ttctactggc agagaatagt aacagaagct
     3241 atttttatgt tccaaccttg aagaagtaaa atcgaaacag aatttaaagt atttcccaaa
     3301 caatggcatc atagtatata aaatacacca attcactttg tatagacctt ttgaatcata
     3361 aaataagaac cttcaaaaat atctaccaag acatggatgg aaattctttt cttatgacac
     3421 aagagaaagg aaaaattaaa gtgaattgga aaattgttta ttgcttgtgt ttataagata
     3481 aacgtgggat ccaagtactc aaaatgctgt tggagtcagt tactgccaac acttgtaata
     3541 gtaatggtac ttctggcttt tcacaaggca atatttagaa tcctgctgta atgaccatat
     3601 tttaaaaaac atgttataat tactaagtta aaagctaatt ttcactcatt tctaccattt
     3661 tattacatga atgtaaggtg atagtttaac aatgagaaca tatggtttgc atttcgttat
     3721 gtgtatgtaa tatataggag aaccaaaccc agcaggtaac caagggttac ttcatgaaca
     3781 ctggattgaa ttgccttttg tcagtgagtt cctctgttta ataaatattg aag
//
