LOCUS       NM_001305213            5339 bp    mRNA    linear   ROD 19-SEP-2024
DEFINITION  Rattus norvegicus clustered mitochondria homolog (Cluh), mRNA.
ACCESSION   NM_001305213 XM_220693
VERSION     NM_001305213.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5339)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 5339)
  AUTHORS   Gao,J., Schatton,D., Martinelli,P., Hansen,H., Pla-Martin,D.,
            Barth,E., Becker,C., Altmueller,J., Frommolt,P., Sardiello,M. and
            Rugarli,E.I.
  TITLE     CLUH regulates mitochondrial biogenesis by binding mRNAs of
            nuclear-encoded mitochondrial proteins
  JOURNAL   J Cell Biol 207 (2), 213-223 (2014)
   PUBMED   25349259
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Mar 4, 2015 this sequence version replaced XM_220693.9.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR21887623.1567616.1,
                                           SRR21887622.3948357.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-178               JAXUCZ010000010.1  60008125-60008302
            179-381             JAXUCZ010000010.1  60014981-60015183
            382-553             JAXUCZ010000010.1  60015718-60015889
            554-697             JAXUCZ010000010.1  60017813-60017956
            698-822             JAXUCZ010000010.1  60018105-60018229
            823-977             JAXUCZ010000010.1  60018312-60018466
            978-1103            JAXUCZ010000010.1  60018568-60018693
            1104-1251           JAXUCZ010000010.1  60018954-60019101
            1252-1344           JAXUCZ010000010.1  60019263-60019355
            1345-2039           JAXUCZ010000010.1  60019950-60020644
            2040-2266           JAXUCZ010000010.1  60022581-60022807
            2267-2371           JAXUCZ010000010.1  60022942-60023046
            2372-2472           JAXUCZ010000010.1  60023184-60023284
            2473-2625           JAXUCZ010000010.1  60023871-60024023
            2626-2688           JAXUCZ010000010.1  60024103-60024165
            2689-2933           JAXUCZ010000010.1  60024277-60024521
            2934-3018           JAXUCZ010000010.1  60024781-60024865
            3019-3172           JAXUCZ010000010.1  60025007-60025160
            3173-3312           JAXUCZ010000010.1  60025239-60025378
            3313-3393           JAXUCZ010000010.1  60026030-60026110
            3394-3519           JAXUCZ010000010.1  60026188-60026313
            3520-3641           JAXUCZ010000010.1  60026405-60026526
            3642-3735           JAXUCZ010000010.1  60026751-60026844
            3736-3870           JAXUCZ010000010.1  60026927-60027061
            3871-3944           JAXUCZ010000010.1  60027146-60027219
            3945-5339           JAXUCZ010000010.1  60028348-60029742
FEATURES             Location/Qualifiers
     source          1..5339
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..5339
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /note="clustered mitochondria homolog"
                     /db_xref="GeneID:303300"
                     /db_xref="RGD:1307222"
     exon            1..178
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..4128
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /note="clustered mitochondria (cluA/CLU1) homolog"
                     /codon_start=1
                     /product="clustered mitochondria protein homolog"
                     /protein_id="NP_001292142.1"
                     /db_xref="GeneID:303300"
                     /db_xref="RGD:1307222"
                     /translation="MVIKTDELPAAAPADSAREHGSQAGGKGRPNAADPPSVMLLNGD
                     CSENLKKEEGSSEPPRENGLDEGEPGEETTGQEVIVIQDTGFSVKILAPGIEPFSLQV
                     SPQEMVQEIHQVLMDREDTCHRTCFSLHLDGNMLDHFSELRSVEGLQEGSVLRVVEEP
                     YTVREARIHVRHVRDLLKSLDPSDAFNGVDCNSLSFLSVFTDGDLGDSGKRKKGLEMD
                     PIDCTPPEYILPGSRERPLCPLQPQNRDWKPLQCLKVLTMSGWNPPPGNRKMHGDLMY
                     LFVITAEDRQVSVTASTRGFYLNQSTAYHFNPKPASPRFLSHSLVELLNQISPTFKKN
                     FAVLQKKRVQRHPFERIATPFQVYSWTAPQAEHAMDCVRAEDAYTSRLGYEEHIPGQT
                     RDWNEELQTTRELPRKNLPERLLRERAIFKVHSDFTAAATRGAMAVIDGNVMAINPSE
                     ETKMQMFIWNNIFFSLGFDVRDHYKDFGGDVAAYVAPTNDLNGVRTYNAVDVEGLYTL
                     GTVVVDYRGYRVTAQSIIPGILERDQEQSVIYGSIDFGKTVVSHPRYLELLERTSRPL
                     KILRHRVLNDRDEEVELCSSVECKGIIGNDGRHYILDLLRTFPPDLNFLPVPGEELPE
                     ECSRAGFPRTHRHKLCCLRQELVDAFVEHRYLLFMKLAALQLMQQKASKVDTSTSLEN
                     GGPPSSTETKSEDSLGSEAGCEEEGSSVSGLAKVKELAETIASDDGTVDPRSREVIQN
                     ACKAVGSVSSTAFDIRFNPDIFSPGVRFPESCQDEVRDQKQLLKDAAAFLLSCQIPGL
                     VKDCTEYAVLPMDGATLAEVMRQRGINMRYLGKVLDLVLRSPARDQLDHIYKIGIGEL
                     ITRSAKHIFKTYLQGVELSGLSAAISHFLNCFLSSYPNPVAHLPADELLSKKRNKRRK
                     NRPPGAADNTAWAVMTPQELWKNICQEAKNYFDFTLECDSVDQAVETYGLQKITLLRE
                     ISLKTGMQILLKEYSFDSRHKPAFTEEDVLNIFPVVKHVNPKASDAFHFFQSGQAKVQ
                     QGFLKEGCELINEALNLFNNVYGAMHVEICACLRLLARLHYIMGDYAEALSNQQKAVL
                     MSERVVGIEHPNTIQEYMHLALYCFASSQLSTALSLLYRARYLMLLVFGEDHPEMALL
                     DNNIGLVLHGVMEYDLSLRFLENALAVTTKYHGPKALKVALSHHLVARVYESKAEFRS
                     ALQHEKEGYTIYKTQLGEDHEKTRESSEYLKCLTQQAVALQRTMNEIYRNGSSANIPP
                     LKFTAPSMASVLEQLNVINGILFIPLSQKDLENLKAEVARRHQLQEASRNRDKAEEPM
                     ATEPEPDRALEGMGSPQTAKEGPSLSLQG"
     exon            179..381
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            382..553
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            554..697
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            698..822
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            823..977
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            978..1103
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1251
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            1252..1344
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            1345..2039
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            2040..2266
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            2267..2371
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            2372..2472
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            2473..2625
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            2626..2688
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            2689..2933
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            2934..3018
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            3019..3172
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            3173..3312
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            3313..3393
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            3394..3519
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            3520..3641
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            3642..3735
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            3736..3870
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            3871..3944
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
     exon            3945..5339
                     /gene="Cluh"
                     /gene_synonym="RGD1307222"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggccgcggc gcgcagggca cttgggttag tggcgcggcg tgcggcgcgg acaggcgagc
       61 cggacgcccg ctcccgccat ggtcattaag acggacgagt tgccggcagc cgccccggcc
      121 gatagcgccc gggagcacgg ctcgcaggcc ggcggcaagg ggcggccgaa cgcggctgat
      181 cccccctcag tcatgctgtt gaatggtgac tgctcagaga acttgaagaa ggaagaaggg
      241 tcatctgagc cacctagaga aaatgggcta gatgagggtg agcctggaga ggagaccact
      301 ggacaggaag tcattgtcat tcaggacaca ggcttttctg tgaagatcct ggcccctggc
      361 atcgagccct tttccctgca ggtgtccccc caggagatgg tacaggagat ccaccaggtg
      421 ctcatggacc gtgaagatac ttgtcaccgt acctgcttct cactgcactt ggatggcaat
      481 atgttggacc acttttcaga gctacgcagc gtggagggac tgcaggaggg ctcggtgctc
      541 cgagttgtgg aagagcctta cacagttcgg gaggcccgaa tccacgtgcg ccatgtccga
      601 gacctcctca agagcttgga cccatctgat gccttcaatg gagttgactg taactccttg
      661 tccttcctga gtgtcttcac tgatggtgac ttaggagaca gtgggaagcg gaagaaaggc
      721 ttggagatgg atcccatcga ctgcacacca cctgagtata tcctgccagg gagccgggag
      781 cggcctctgt gtcccctgca gccccagaac cgtgactgga agcccctgca gtgtctgaaa
      841 gtgctcacca tgagtggctg gaacccccct cctgggaacc gcaagatgca tggggacctc
      901 atgtacctgt ttgtgatcac tgctgaggac cggcaagtga gcgtcactgc gtccacacgg
      961 ggcttctact tgaatcagtc cacagcctac cacttcaacc ccaagcctgc cagcccccgc
     1021 ttccttagcc attctctagt agagctgctc aaccagatca gcccaacctt caaaaagaac
     1081 tttgctgtgc tgcagaagaa aagggtccag cgccacccgt tcgagaggat cgccaccccg
     1141 ttccaggtat acagctggac agccccccag gcggagcatg ccatggactg tgtgcgtgct
     1201 gaggacgcct acacctcaag gctgggctac gaggagcaca ttcctggaca gacccgggac
     1261 tggaatgaag agctgcagac aacaagggag ctgccccgca agaacctgcc tgagcgattg
     1321 cttcgagaaa gagccatttt caaggtgcac agtgatttca cagcagcagc cacaaggggt
     1381 gccatggcag ttattgatgg caatgtgatg gccatcaacc ccagcgagga gaccaagatg
     1441 cagatgttca tctggaacaa catcttcttt agcctgggct ttgatgtccg ggaccactac
     1501 aaagactttg gtggggatgt ggcagcctat gtggcaccca ccaatgacct gaacggtgta
     1561 cgcacataca atgctgtgga tgtagagggg ctgtacacac tgggtacagt ggtggtggat
     1621 taccgtggct accgggtcac agctcagtcc atcatccctg gcatcctaga acgggaccag
     1681 gagcagagtg tcatctatgg ctccattgac tttggcaaga cagtggtgtc acacccacgc
     1741 tacctggagc tgttggagcg caccagccgg cctctcaaga ttctgcgtca ccgagtgctc
     1801 aatgaccgag atgaggaggt ggagctctgt tcctcagtcg agtgtaaggg catcattggc
     1861 aatgatgggc gccactacat ccttgaccta ctgcgcacct tcccacctga cctcaacttc
     1921 cttcctgtgc ctggtgagga gctgcctgag gagtgctctc gagctggctt cccccgaacc
     1981 catcgacaca agctgtgctg tttgcgccag gagctagtag atgcttttgt ggagcacagg
     2041 taccttctct tcatgaagct ggccgcctta cagttgatgc aacagaaggc cagcaaggtg
     2101 gacacctcca cctccctgga gaatggtggc cctccctcct caacagagac caaatctgaa
     2161 gactcactag gatctgaggc aggttgtgag gaggaaggca gcagtgtgag cggcctggcc
     2221 aaggtgaagg agctggcaga gaccatcgcc tcagacgatg gcacagtaga ccctcgaagc
     2281 cgagaggtga tccaaaacgc ctgcaaggct gttggctctg tcagcagcac agcctttgat
     2341 attcgcttca atcctgacat cttctctcca ggggttcgat ttcctgagtc ctgccaggat
     2401 gaagttcggg accagaagca gctgttgaaa gatgcagctg ccttcttgct ctcctgccag
     2461 atccctggtt tggtaaagga ttgcacagag tatgctgtgc tgcccatgga cggggccaca
     2521 ctggctgagg tgatgcgcca gcgtggcatc aacatgcgat acctgggcaa ggtgctggat
     2581 ctggtgctgc ggagcccagc ccgggaccag ctggaccaca tttataaaat cggcattgga
     2641 gagctcatca cacgctccgc caagcatatc ttcaagacat acctacaggg agtggagctc
     2701 tcaggcctct cagctgccat cagccacttc ctgaactgtt tcctgagctc ttaccccaac
     2761 cctgtggccc acctgcctgc tgatgagctg ctctccaaga aaaggaacaa gaggaggaaa
     2821 aaccggcctc caggagctgc agacaacact gcgtgggctg tgatgacccc ccaagagctc
     2881 tggaagaaca tatgtcagga ggccaagaac tactttgact tcacccttga gtgtgattct
     2941 gtggaccagg ctgtggagac ctacgggctg cagaagataa cactgctacg ggagatctca
     3001 ctgaaaactg ggatgcagat tctgctgaag gaatacagct ttgacagccg ccacaagcct
     3061 gccttcactg aggaagatgt gctcaatatc ttccctgtgg tcaagcatgt caaccccaag
     3121 gcctcggatg ccttccactt cttccagagt ggacaggcca aagtacagca gggcttcctg
     3181 aaggaaggct gtgagctcat caacgaggct ctgaacctgt tcaacaatgt ctatggagcc
     3241 atgcatgtgg agatctgtgc ctgtttgcgg cttctggccc gcctccacta catcatgggg
     3301 gattatgctg aggccctcag taatcagcag aaggctgtgc tgatgagtga gcgggtggtg
     3361 ggcattgagc accccaacac catccaggaa tatatgcacc tggccctcta ctgctttgcc
     3421 agcagccagc tgtccacagc cctgagcctc ctgtaccgtg cccgctacct catgctgctt
     3481 gtgtttgggg aggaccatcc tgagatggca ttgttggata acaacatcgg gctggtgctg
     3541 catggcgtaa tggagtacga tctatccctg cgcttcctgg agaatgcact ggctgtcact
     3601 accaagtacc atggtcccaa ggcccttaag gtggctctca gccaccacct tgttgcccgg
     3661 gtttatgaga gcaaagctga gttccggtca gccctccagc atgagaagga aggttacacc
     3721 atctacaaga cacagctagg tgaggaccat gagaaaacca gggagagctc tgagtacctc
     3781 aagtgcctga cccagcaggc tgtggccctg caacgcacca tgaatgagat ctaccgtaat
     3841 ggctccagtg ccaatatccc accccttaag ttcacagctc ccagcatggc cagtgtcctg
     3901 gagcagctca atgtcatcaa tggcatcctc ttcattcctc tcagccaaaa agacctggaa
     3961 aacctgaagg cagaggtggc acggcgacac cagctccagg aggccagcag aaacagggat
     4021 aaggctgaag aacccatggc cactgagcct gagccagaca gagccctgga gggcatgggc
     4081 tcccctcaga ctgccaagga aggtccttcc ctgagcttac agggataaaa aaggagagaa
     4141 agatggacag tccagcagcc ccattacccg gtgatgcaga cagattccag gagaattctg
     4201 gggggcatgc cctgcagatt gggagaggaa gctaatcttc cactttctac ccccacctca
     4261 ccctaccatc tgcctggggc cctgccctgg cctgcctgcc cctaaaagat ggttttgcac
     4321 tggttcaatg aatattcaat gcagaggcct aattgaagac aagaaaaatg aagtgtgtaa
     4381 ggcatcagct ccagctgggg gcaagtgcct ccccagcctc aagccgatgt atgtccatgc
     4441 ctgtggatgt cttgctccgt ccttcctgat gtatatagcc cagtcagttc tgagtggatg
     4501 acgtgcagat aacaatttct caggtcattt ctatgtttga cattatggct gctgcttttg
     4561 ttgctactac ccttgggtcc agcctggttt aagccaaaaa agatgggggc tttcatgtgt
     4621 cttgggaggg ggagccagat gtctggtagg gtgcaaggtg agacctacag tggctttact
     4681 gtgattgggc ctggcctacc tgtagcctta gggtgaaggg aaggggccag cgttggtgga
     4741 ccccacacat ccatgtgcct ggctttggcc aagcaggaga ggtggtccta ccacaggctt
     4801 tgacttgcct ccctgtaccc cgggtgagca taaccttggg ggccaacagt ctgaatgtat
     4861 ctttctcccc attttaacct gagctgccta atgcatagtt gggtaagggg tgggacccag
     4921 ggctgaattg tggatcccag ggaaagtgcc atgcctagga gtgattgtca cctcggtgga
     4981 gcctgactcc ttcttggttt ttgccatata agcacttaca caaagaagct cttgggtgtt
     5041 ggggctccta ctgccttggc tgccctctct ctctcccctc cctgcctgtg tcgtttttct
     5101 ttgtctgctg tccctgaagg agatggccac cctttgagcc taagagagct gttttaggca
     5161 gatcctctac ttggggcttt tctggagctg ctgatggata gtatctgtcc agggaccttg
     5221 tttcaaaggg aatgggcggc cagcaaggca tccccacagc tactaagaac gttttcttgt
     5281 ttttaaacca tcacatcttc atttcacatt ggaataaagt gagtttttga aacctgctg
//
