LOCUS       NM_001399473            1666 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus clusterin associated protein 1 (Cluap1),
            transcript variant 1, mRNA.
ACCESSION   NM_001399473 XM_006245832
VERSION     NM_001399473.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Katoh,Y., Terada,M., Nishijima,Y., Takei,R., Nozaki,S., Hamada,H.
            and Nakayama,K.
  TITLE     Overall Architecture of the Intraflagellar Transport (IFT)-B
            Complex Containing Cluap1/IFT38 as an Essential Component of the
            IFT-B Peripheral Subcomplex
  JOURNAL   J Biol Chem 291 (21), 10962-10975 (2016)
   PUBMED   26980730
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Botilde,Y., Yoshiba,S., Shinohara,K., Hasegawa,T., Nishimura,H.,
            Shiratori,H. and Hamada,H.
  TITLE     Cluap1 localizes preferentially to the base and tip of cilia and is
            required for ciliogenesis in the mouse embryo
  JOURNAL   Dev Biol 381 (1), 203-212 (2013)
   PUBMED   23742838
REFERENCE   3  (bases 1 to 1666)
  AUTHORS   Pasek,R.C., Berbari,N.F., Lewis,W.R., Kesterson,R.A. and Yoder,B.K.
  TITLE     Mammalian Clusterin associated protein 1 is an evolutionarily
            conserved protein required for ciliogenesis
  JOURNAL   Cilia 1 (1), 20 (2012)
   PUBMED   23351563
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1666)
  AUTHORS   Follit,J.A., Xu,F., Keady,B.T. and Pazour,G.J.
  TITLE     Characterization of mouse IFT complex B
  JOURNAL   Cell Motil Cytoskeleton 66 (8), 457-468 (2009)
   PUBMED   19253336
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jan 10, 2022 this sequence version replaced XM_006245832.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.27029.1,
                                           SRR26643292.39302.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-167               JAXUCZ010000010.1  12124709-12124875   c
            168-279             JAXUCZ010000010.1  12121787-12121898   c
            280-364             JAXUCZ010000010.1  12119974-12120058   c
            365-544             JAXUCZ010000010.1  12118800-12118979   c
            545-640             JAXUCZ010000010.1  12116603-12116698   c
            641-724             JAXUCZ010000010.1  12114825-12114908   c
            725-858             JAXUCZ010000010.1  12110819-12110952   c
            859-1000            JAXUCZ010000010.1  12109127-12109268   c
            1001-1073           JAXUCZ010000010.1  12104212-12104284   c
            1074-1181           JAXUCZ010000010.1  12100989-12101096   c
            1182-1237           JAXUCZ010000010.1  12097821-12097876   c
            1238-1666           JAXUCZ010000010.1  12094346-12094774   c
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1666
                     /gene="Cluap1"
                     /note="clusterin associated protein 1"
                     /db_xref="GeneID:363544"
                     /db_xref="RGD:1359189"
     exon            1..167
                     /gene="Cluap1"
                     /inference="alignment:Splign:2.1.0"
     CDS             146..1387
                     /gene="Cluap1"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="clusterin-associated protein 1 isoform 1"
                     /protein_id="NP_001386402.1"
                     /db_xref="GeneID:363544"
                     /db_xref="RGD:1359189"
                     /translation="MSFRDLRNFTEMMRALGYPRHISMENFRTPNFGLVSEVLLWLVK
                     RYEPQTDIPSDTETEQDRVFFIKAIAQFMATKAHIKLNTKKLYQADGYAVKELLKITS
                     VLYNAMKTKGMEGSNVGEEDISKFKFDLGSKIADLKAARQLASEITAKGASLYDLLGK
                     EVELRELRTEAIARPLEINETEKVMRIAIKDILAQVQKTKDLLNNVASDEANLEAKIE
                     KRKLELERNRKRLQTLQSVRPAFMDEYEKVEEELQKQYDVYLEKFRNLAYLEQQLEDH
                     HRMEQERFEEAENTLRLMQNKLKEEEKRLLKSGSNDDSDIDIQEDDESDSELEDRRLS
                     KPRTAMEVLMQGRPSKRIVGTMQGGDSDEDEDSEDSEMNMEDDEEDDDDLEDESIALS
                     PAKPSRRVRKPEPLDESDNDF"
     exon            168..279
                     /gene="Cluap1"
                     /inference="alignment:Splign:2.1.0"
     exon            280..364
                     /gene="Cluap1"
                     /inference="alignment:Splign:2.1.0"
     exon            365..544
                     /gene="Cluap1"
                     /inference="alignment:Splign:2.1.0"
     exon            545..640
                     /gene="Cluap1"
                     /inference="alignment:Splign:2.1.0"
     exon            641..724
                     /gene="Cluap1"
                     /inference="alignment:Splign:2.1.0"
     exon            725..858
                     /gene="Cluap1"
                     /inference="alignment:Splign:2.1.0"
     exon            859..1000
                     /gene="Cluap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1001..1073
                     /gene="Cluap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..1181
                     /gene="Cluap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1182..1237
                     /gene="Cluap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1238..1666
                     /gene="Cluap1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcttcgctt cctgtcttgt ttggcctgga ccgcacgctg tccagggcct ctgagtgttg
       61 ctatagagac cggcgagagc taggcctgag aactctaaag agacgagcag cgacgcctca
      121 gtggactctt ggggaccaca gcgccatgtc tttccgcgac ctccgcaatt tcacagagat
      181 gatgagagcc ttggggtacc cacgccacat ttctatggag aatttccgca cacccaactt
      241 tgggcttgtc tctgaagtgc ttctgtggct tgtgaaaaga tatgagccgc agactgacat
      301 cccttctgac actgagactg aacaagaccg agttttcttc attaaggcaa ttgcccagtt
      361 catggccaca aaggcacata taaaactcaa caccaagaaa ctctatcaag cagacgggta
      421 tgcagtgaag gagctgctga agatcacatc cgttctttat aacgccatga agaccaaagg
      481 catggagggc tccaacgtcg gagaggaaga catcagcaaa ttcaagtttg atctgggctc
      541 caagattgca gatttgaaag cagccagaca acttgcttct gaaatcactg ctaaaggagc
      601 ttctctgtat gacttgctgg gcaaagaggt tgagctgagg gaactgagaa cggaagccat
      661 tgctcgacct ctagaaataa acgagactga aaaggtgatg agaattgcaa tcaaagatat
      721 tttggcacag gttcagaaga ctaaagacct gctcaacaat gtggcgtctg acgaagccaa
      781 tttagaagcc aaaattgaaa agagaaaatt ggagctggaa agaaatcgga agcgattgca
      841 gaccctgcag agtgtcaggc cagcctttat ggatgagtat gagaaggttg aggaagagct
      901 gcaaaagcag tatgacgtct acctggagaa gttccggaac ctggcttacc tggagcagca
      961 gcttgaggac catcacagga tggagcagga acggtttgaa gaagctgaga atactctgcg
     1021 tctgatgcag aataagctga aggaagagga gaagagactg ctcaagagtg gaagcaatga
     1081 cgactcggac atagacatcc aagaggacga tgaatcggac agcgagctgg aggacagacg
     1141 gctgtctaag cctcggacag ccatggaggt gctcatgcaa ggaaggccca gcaaacgcat
     1201 cgtgggcaca atgcaaggcg gagactccga tgaagatgaa gactcggagg acagcgaaat
     1261 gaacatggaa gatgatgaag aagatgacga tgatttggaa gatgagagca ttgcgctctc
     1321 accagctaaa cccagtcgga gggtccggaa acccgagccc ttggacgaga gtgacaatga
     1381 cttctgacct tcttgccaag agacccagac agcttaagag cgtcagatgt ataggtaaac
     1441 agggactcag caggctggaa aggtaacgtg ttttgttcac taccccatct gagcttatcc
     1501 atactgaaac tccaacagag attttctttg tctgtctcct aacgcttggg atccccatac
     1561 ccgtgttcca agtgattcaa tctgtaagaa aagcccctga ggagaaatac agacttgaca
     1621 ccatgtaagt cttggctgct gttattatta aattagtttt ccttga
//
