LOCUS       NM_001135002             470 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus colipase-like 2 (Clpsl2), mRNA.
ACCESSION   NM_001135002 XM_001070754 XM_001078433
VERSION     NM_001135002.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On or before Sep 17, 2008 this sequence version replaced
            XM_001070754.1, XM_001078433.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN16676784,
                              SAMN16676788 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-125               JAXUCZ010000020.1  6609832-6609956
            126-248             JAXUCZ010000020.1  6610691-6610813
            249-470             JAXUCZ010000020.1  6612434-6612655
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..470
                     /gene="Clpsl2"
                     /note="colipase-like 2"
                     /db_xref="GeneID:689425"
                     /db_xref="RGD:1592336"
     exon            1..125
                     /gene="Clpsl2"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..344
                     /gene="Clpsl2"
                     /note="colipase-like protein 2"
                     /codon_start=1
                     /product="colipase-like protein 2 precursor"
                     /protein_id="NP_001128474.1"
                     /db_xref="GeneID:689425"
                     /db_xref="RGD:1592336"
                     /translation="MAFTQALVTVLAFLVGTLPHKFDFSENSDLKKANGDKCVHHSQC
                     FSDCCLIDLERSGAFCTSKSHVGMACLPQTKRSLNILCPCRIGLSCHSKDPMCPRRCQ
                     MI"
     exon            126..248
                     /gene="Clpsl2"
                     /inference="alignment:Splign:2.1.0"
     exon            249..470
                     /gene="Clpsl2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcagggagtt tgccaccacc caggccgtca tggccttcac ccaggccttg gtcaccgtgc
       61 tggcttttct tgttgggacc ctgccacaca aattcgactt cagtgaaaac tcagacctta
      121 aaaaggccaa cggagacaag tgtgtccacc acagccagtg ctttagtgac tgttgcctca
      181 tagacctgga aagaagcggg gccttctgca cctctaagtc ccatgtaggc atggcgtgct
      241 tgccgcagac caagcggagc ctgaacatcc tgtgtccctg tcgaattggc ttgagctgtc
      301 attctaagga ccccatgtgt ccccgccggt gtcagatgat atagaggatg aagcaggctg
      361 ctggtggcca cagctgctgc accctccctt tccgggtgtc tcccccatcc ccaggtgcca
      421 cgcccatccc cacccccacc tcgactcctg aggattaaag tcacttcctg
//
