LOCUS       XM_017599489            2817 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cytokine-dependent hematopoietic cell
            linker (Clnk), transcript variant X1, mRNA.
ACCESSION   XM_017599489
VERSION     XM_017599489.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017599489.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017599489.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2817
                     /gene="Clnk"
                     /note="cytokine-dependent hematopoietic cell linker;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     7 samples with support for all annotated introns"
                     /db_xref="GeneID:295518"
                     /db_xref="RGD:1562417"
     CDS             985..2328
                     /gene="Clnk"
                     /codon_start=1
                     /product="cytokine-dependent hematopoietic cell linker
                     isoform X1"
                     /protein_id="XP_017454978.1"
                     /db_xref="GeneID:295518"
                     /db_xref="RGD:1562417"
                     /translation="MTSQGNKRTTKEGFSDLRFQNVSLLKNRSWPRLSSAKGPCRAVL
                     EPLPDHRRNLAVIPDGEKCSSNNDYEDPELQLLRAWPSMKILPARPIQESEYADTRYF
                     KDAMEAPLLLPPKPSVSTERQIRDVGMNPQKEDVDKPTSKNVRSQHFKGFKYTKVNKT
                     PLPPPRPAMTLPKKYQPLPPAPPEESSEHSPPKHTFPEAQRGPRQRSSKDFSKVLEAE
                     EESHHQTKPESPCPSPSLNTQKSPPAIASSSYMPGKHNKQARDHTGIMQHCPPQRCQA
                     AASHSPPVLSYENTNSEKPVPTKFDEKDAQQNEWYIGDYSRQAVEEVLMRESKDGTFL
                     VRDCSTKSKAEPYVLVVFYGNKVYNVKIRFLESNQQFALGTGLRGNEMFDSVEDIIEH
                     HMYFPIVLIDGKDKAAHREQCYLTQPLPLARHLLTQYSNQTLHEEEDQWEEQEPL"
ORIGIN      
        1 taaagagaat gaattgtgtc tatctctcta ggcatcagtt ttcacaatta caaaatgaaa
       61 taaagaatat tctcatcaca ttattggcaa attaaatagg ttggcaccta aatccgctta
      121 gtgcaatgtt tggctcataa ttaacaccct ataagagctt attttagtgt ttccctcatt
      181 aagtcaaaac cagagctatc cccacccaaa agaaataaac tttgaattta ttctaaatag
      241 agtaggaatc tgttataaaa ttcaacatca atgaaatcca tttaaataac attaaatcat
      301 ctaggaccac tataatgggt actccagagg acagcttaaa tagattgagg ttaaggaaga
      361 aacagattga catatgttga gtctataatg ttatatgact ttgctcatga atatgagaat
      421 tacctatgat tacatcatca ataacacagc aagaatagga gccaaccact tctcttctgt
      481 gtctgctgaa taatccctga gaaatgcgtg tgtcttagga gtttagggag gcaatgtaat
      541 tacaagacag tccatatgtc caagaggcaa agctcacttt gagtcactcg gtagtctgct
      601 gtcacatgtt ctgattcttg tgaagggctg cacacgaatc tgtatggcgt gaggtcagct
      661 tcgacagctt ccacaccttc aaagctagta ccacaactca caaagaggaa gtctggcctg
      721 ctacgtggcc aaactgccca ggtctgtggc tgcctttctc agaaaaccaa aactaacagg
      781 tacatacaag gcggtctctg ctaaaggact ctgctgaggg aggagaacat gtcaatcctg
      841 acttacatat taccctgagc tctccaggat gcaaccatgg actccctttc caggatctag
      901 ctgtctcaac gctgagccct tgactgaacg aaggctggcc aggctgaact gaagatccct
      961 ctcatttgcc agggaccaag gacaatgacc agccagggca ataaaaggac aacgaaagaa
     1021 ggattcagtg atctgagatt ccagaacgtc tctctgctga aaaataggtc atggccccgc
     1081 ctcagcagtg ccaaagggcc gtgccgggca gttctggaac cacttccgga tcatagaagg
     1141 aacttggctg tgatcccaga tggagaaaaa tgcagcagta acaacgacta tgaagaccct
     1201 gagctccagc tgctgagggc gtggccgtcg atgaaaattt taccagccag acctatccag
     1261 gaatcagaat atgcagatac acgctatttc aaggatgcaa tggaggctcc ccttctgtta
     1321 cctcccaagc cttctgtctc cactgagagg caaatcaggg atgtagggat gaatccgcag
     1381 aaagaagatg tggacaagcc tacctccaag aatgtcagaa gtcaacactt taaaggattc
     1441 aaatacacaa aggtgaacaa gactcctttg ccgcctcctc ggcctgctat gactctcccc
     1501 aaaaagtacc aacccttacc cccagcacca ccagaggaaa gcagtgaaca ctcccctcca
     1561 aaacatacct ttccagaagc ccagaggggg cccaggcaga ggagctcaaa agacttcagt
     1621 aaggtccttg aagcagaaga agaatctcat caccagacaa agccagaatc tccttgccca
     1681 tcaccaagcc taaacactca gaagagtcca cctgccattg ccagctcttc ctacatgcca
     1741 ggaaagcaca ataaacaagc cagagaccat acaggtatca tgcaacactg tcctcctcag
     1801 agatgccaag ctgcagccag ccacagccct cctgtgctgt cctatgaaaa cacaaactca
     1861 gagaaacctg tccccacaaa gtttgatgaa aaggatgccc agcagaatga atggtacatt
     1921 ggagattaca gtcgccaggc ggtggaagag gtgttaatga gagagagcaa ggatggtact
     1981 tttttggtcc gagattgttc cacaaaatcc aaggcagagc cctatgtttt ggtggtgttt
     2041 tatgggaaca aggtctacaa tgtgaaaatc cgcttcctcg agagcaatca gcagtttgcc
     2101 ctgggcacag gactcagagg aaatgagatg tttgattctg tggaagacat cattgaacac
     2161 cacatgtatt ttccaattgt gctaatagat gggaaagaca aggctgcaca cagggaacag
     2221 tgctacctca cccagccact gcctcttgcc aggcaccttc tgactcagta ctccaaccag
     2281 acacttcatg aggaagaaga ccagtgggag gaacaagagc ccttatgaat accagcttga
     2341 aggcagacag cagaaatatg tggactatga tgtgaagtgg ccacaggtcc ggactttggc
     2401 ctgttctgtg aaccgtgacg tcaatggaac tagcagatcc atagcgagga cctcagagga
     2461 ccccggctcc tcccaagcat aaagcaaaca ttcattcgag taacagtgaa gacatgtcta
     2521 atagtttaat gatacatttc cattcaaagg aagagaagag ctgtcctcaa aggagcactg
     2581 atgcttacaa cagcacagca catggtgatg ctgtttcttc tcgggcaaag aggatgtgca
     2641 tgtattccta cttcctaaca cagatgaggc agtggaacct caaagaagct actgatgtat
     2701 tttagtaaaa gacacaagtc cagctcgcaa cccattttgc ctgttccgtg tcactgcatc
     2761 atcccagtta taccatctac actgggatgt ttaaattgag ctagagcagg gagggaa
//
