LOCUS       XM_039107256            2269 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CLN3 lysosomal/endosomal transmembrane
            protein, battenin (Cln3), transcript variant X5, mRNA.
ACCESSION   XM_039107256
VERSION     XM_039107256.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2269
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2269
                     /gene="Cln3"
                     /note="CLN3 lysosomal/endosomal transmembrane protein,
                     battenin; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 ESTs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     77 samples with support for all annotated introns"
                     /db_xref="GeneID:293485"
                     /db_xref="RGD:1359537"
     CDS             892..2067
                     /gene="Cln3"
                     /codon_start=1
                     /product="battenin isoform X2"
                     /protein_id="XP_038963184.1"
                     /db_xref="GeneID:293485"
                     /db_xref="RGD:1359537"
                     /translation="MGSSESSWRRLEDSEREETDSEPQTPPLDNLSVLWKNAVGFWIL
                     GLCNNFSYVVMLSAAHDILKQEQASGNQSHVEPGPTPMPHNSSSRFDCNSISTAAVLL
                     ADILPTLVIKLLAPLGLHLLPYSPRVLVSGVCSAGSFVLVAFSQSVGLSLCGVVLASI
                     SSGLGEVTFLSLTAFYPSAVISWWSSGTGGAGLLGSLSYLGLTQAGLSPQHTLLSMLG
                     IPVLMLASYFLLLTSPEPLDPGGQDEAETAARQPLIGTETPESRPGTSWDLSLQERWT
                     VFKGLLRYIIPLVLVYFAEYFINQGLFELLFFRNTSLSHAQQYRWYQMLYQAGVFASR
                     SSLQCCRIRFTWILALLQTSDKHREFAMEAACISDTLGISLSGVLALPLHDFLCHLP"
ORIGIN      
        1 cagtgagagg aagctagggt ttgtggttcc tgatttatct agggagaagc agtgaagtga
       61 ggataagacc agtggaagtt ctgccttcgc atttcaatgc tgttaagatt tttctgggga
      121 taaaaggtct gaattggtgc tccaatgccc atatcctcac ccacggtcat tcttgtactg
      181 tggcctgtca ctcacagctt actgtgagtt ccttaagcac agaggctgca gattttggat
      241 agcccagaag gcgtggtagg gtcctttttc tcactggttg aatgatctag gaagagcacc
      301 acaggagggc atatttcaag cagcaatctt aatgacaggt ggttgaaaag acctggtaga
      361 agtgggcaga ggctgctgga agccacagca gaggaatagg cttgatgaag aacggtcaag
      421 atgctaccct accatggagc agaaggcaag tcagagcagc aggaaagaag ctgaagcctc
      481 ccgcgccatg actagtactg gcagatttgg agtgccactt ttcatggctc tacttgtggc
      541 tcccttcggt tccagttcaa attcagtgct tccagggttc tcccgaattc tcctttcaat
      601 cccggaagtt tgagaagccc aaaggcgaaa aggtggaaaa aggacccgga agtaggagca
      661 acctccaagc acgtgatgga agacccacgg gtactgtcac gtgatcccca acctgctagt
      721 ctaccttgcg aagagctctg ctgctcttaa agtagtgtac agcagaccgc ggaacctgtg
      781 actgaccacg gggcgttgat cccacctgtc ccagactttc atctgttttc ttgacgctaa
      841 ctcctaacac acgctgactt taggtccttt gggggacccg aactcaatgt catgggaagc
      901 tctgagagct cgtggaggcg ccttgaggat tctgagaggg aggagaccga ctcagagccc
      961 caaacccctc cgttggataa tctaagtgtc ctttggaaga atgcggtggg cttctggatc
     1021 ttggggcttt gcaacaactt ctcatatgtg gtgatgctga gcgctgccca tgacatcctt
     1081 aagcaggagc aggcatctgg aaaccagagc catgtggaac caggcccaac acccatgccc
     1141 cataacagct catctcgatt tgattgcaat tcaatctcca cagctgcggt gctcctagca
     1201 gacatccttc ccacccttgt catcaaactc ctggctcctc ttggccttca tttgctgcct
     1261 tacagccccc gggtgcttgt cagtggagtc tgttctgctg gaagctttgt tctggttgcc
     1321 ttttctcaat cagtggggtt aagcctgtgt ggagtggttt tggccagcat ctcatcaggt
     1381 ctaggggagg tcaccttcct ttcactgact gccttctacc ccagtgctgt gatctcatgg
     1441 tggtcttcag gaactggggg tgcagggctt cttggatcgc tgtcatacct ggggctcacc
     1501 caggctggcc tctccccgca gcacacccta ctttctatgc tggggatccc tgttctgatg
     1561 ctagccagct atttcttgct gctcacatct cctgaacccc tggaccctgg agggcaagac
     1621 gaggcagaga ctgctgcccg gcagcctctc ataggcaccg agaccccaga gtctaggcca
     1681 ggtaccagct gggacctctc tctccaggaa aggtggacag tgttcaaggg cctcttgcga
     1741 tacatcatcc ctctggtgct ggtctacttt gcagaatact ttatcaacca ggggcttttt
     1801 gagctcctgt ttttccggaa cacatcctta agtcatgctc agcagtaccg atggtaccag
     1861 atgctatacc aggctggtgt gttcgcttcc cgctcttctc tccagtgttg ccgaatccgg
     1921 ttcacctgga tcctagccct gctccagacc agtgacaagc accgagagtt tgccatggaa
     1981 gctgcctgca tttctgacac cttgggaatc tccctgtcag gggtcctggc cttgcctctg
     2041 catgacttcc tctgccacct cccctgatat gagttgctca gcacacactg gcctaaaggc
     2101 acagtgagct ctgccacagg ccttccctga gactcaggag tgggaagatc tacagtcctg
     2161 ccctacctca gcagggagcc cccattgttt cccactcccg agctggcctc agagagtttt
     2221 ttttccccca ccccctgccc ttctaataaa tgcttatttt accagttta
//
