LOCUS       NM_173154               3904 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus CXADR-like membrane protein (Clmp), mRNA.
ACCESSION   NM_173154
VERSION     NM_173154.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3904)
  AUTHORS   Lin,C.H., Chang,Y.C., Chang,T.K., Huang,C.H., Lu,Y.C., Huang,C.H.
            and Chen,M.J.
  TITLE     Enhanced expression of coxsackievirus and adenovirus receptor in
            lipopolysaccharide-induced inflammatory macrophages is through
            TRIF-dependent innate immunity pathway
  JOURNAL   Life Sci 265, 118832 (2021)
   PUBMED   33259866
  REMARK    GeneRIF: Enhanced expression of coxsackievirus and adenovirus
            receptor in lipopolysaccharide-induced inflammatory macrophages is
            through TRIF-dependent innate immunity pathway.
REFERENCE   2  (bases 1 to 3904)
  AUTHORS   Li,F., Miao,X., Chen,Y. and Curry,T.E.
  TITLE     CXADR-like membrane protein (CLMP) in the rat ovary: stimulation by
            human chorionic gonadotrophin during the periovulatory period
  JOURNAL   Reprod Fertil Dev 28 (6), 742-749 (2016)
   PUBMED   25400132
  REMARK    GeneRIF: Data suggest that expression of Clmp in ovary during
            ovulation can be up-regulated by chorionic gonadotrophin; human
            chorionic gonadotrophin, a fertility agent, was used in these
            studies. Up-regulation of Clmp in ovary may be important in cell
            adhesion events during ovulation and luteal formation such as
            maintaining the structure and communication of ovarian follicular
            and luteal cells.
REFERENCE   3  (bases 1 to 3904)
  AUTHORS   Fong,K.W., Leung,J.W., Li,Y., Wang,W., Feng,L., Ma,W., Liu,D.,
            Songyang,Z. and Chen,J.
  TITLE     MTR120/KIAA1383, a novel microtubule-associated protein, promotes
            microtubule stability and ensures cytokinesis
  JOURNAL   J Cell Sci 126 (Pt 3), 825-837 (2013)
   PUBMED   23264731
REFERENCE   4  (bases 1 to 3904)
  AUTHORS   Van Der Werf,C.S., Wabbersen,T.D., Hsiao,N.H., Paredes,J.,
            Etchevers,H.C., Kroisel,P.M., Tibboel,D., Babarit,C.,
            Schreiber,R.A., Hoffenberg,E.J., Vekemans,M., Zeder,S.L.,
            Ceccherini,I., Lyonnet,S., Ribeiro,A.S., Seruca,R., Te
            Meerman,G.J., van Ijzendoorn,S.C., Shepherd,I.T., Verheij,J.B. and
            Hofstra,R.M.
  TITLE     CLMP is required for intestinal development, and loss-of-function
            mutations cause congenital short-bowel syndrome
  JOURNAL   Gastroenterology 142 (3), 453-462 (2012)
   PUBMED   22155368
REFERENCE   5  (bases 1 to 3904)
  AUTHORS   Teckchandani,A., Toida,N., Goodchild,J., Henderson,C., Watts,J.,
            Wollscheid,B. and Cooper,J.A.
  TITLE     Quantitative proteomics identifies a Dab2/integrin module
            regulating cell migration
  JOURNAL   J Cell Biol 186 (1), 99-111 (2009)
   PUBMED   19581412
REFERENCE   6  (bases 1 to 3904)
  AUTHORS   Kawabata,K., Tashiro,K., Sakurai,F., Osada,N., Kusuda,J.,
            Hayakawa,T., Yamanishi,K. and Mizuguchi,H.
  TITLE     Positive and negative regulation of adenovirus infection by
            CAR-like soluble protein, CLSP
  JOURNAL   Gene Ther 14 (16), 1199-1207 (2007)
   PUBMED   17538635
REFERENCE   7  (bases 1 to 3904)
  AUTHORS   Eguchi,J., Wada,J., Hida,K., Zhang,H., Matsuoka,T., Baba,M.,
            Hashimoto,I., Shikata,K., Ogawa,N. and Makino,H.
  TITLE     Identification of adipocyte adhesion molecule (ACAM), a novel CTX
            gene family, implicated in adipocyte maturation and development of
            obesity
  JOURNAL   Biochem J 387 (Pt 2), 343-353 (2005)
   PUBMED   15563274
  REMARK    GeneRIF: We identified ACAM (adipocyte adhesion molecule), a novel
            homologue of the CTX (cortical thymocyte marker in Xenopus) gene
            family, which may be the critical adhesion molecule in adipocyte
            differentiation and development of obesity.
REFERENCE   8  (bases 1 to 3904)
  AUTHORS   Raschperger,E., Engstrom,U., Pettersson,R.F. and Fuxe,J.
  TITLE     CLMP, a novel member of the CTX family and a new component of
            epithelial tight junctions
  JOURNAL   J Biol Chem 279 (1), 796-804 (2004)
   PUBMED   14573622
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Nov 27, 2020 this sequence version replaced NM_173154.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF302047.1, SRR26360176.1966643.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-120               JAXUCZ010000008.1  49957925-49958044
            121-278             JAXUCZ010000008.1  50041665-50041822
            279-480             JAXUCZ010000008.1  50053157-50053358
            481-648             JAXUCZ010000008.1  50054277-50054444
            649-771             JAXUCZ010000008.1  50056064-50056186
            772-913             JAXUCZ010000008.1  50061897-50062038
            914-3904            JAXUCZ010000008.1  50062969-50065959
FEATURES             Location/Qualifiers
     source          1..3904
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q22"
     gene            1..3904
                     /gene="Clmp"
                     /gene_synonym="ACAM; Asam; Ol16"
                     /note="CXADR-like membrane protein"
                     /db_xref="GeneID:286939"
                     /db_xref="RGD:708569"
     exon            1..120
                     /gene="Clmp"
                     /gene_synonym="ACAM; Asam; Ol16"
                     /inference="alignment:Splign:2.1.0"
     CDS             96..1214
                     /gene="Clmp"
                     /gene_synonym="ACAM; Asam; Ol16"
                     /note="adipocyte adhesion molecule; adipocyte-specific
                     adhesion molecule; CAR-like membrane protein; coxsackie-
                     and adenovirus receptor-like membrane protein; visceral
                     adipose tissue-specific transmembrane protein OL-16"
                     /codon_start=1
                     /product="CXADR-like membrane protein precursor"
                     /protein_id="NP_775177.1"
                     /db_xref="GeneID:286939"
                     /db_xref="RGD:708569"
                     /translation="MSLFFLWLVTYYVGTLGTHTEIKRVAEEKVTLPCHHQLGLPEKD
                     TLDIEWLLTDNEGNQKVVITYSSRHVYNNLTEEQKGRVAFASNFLAGDASLQIEPLKP
                     SDEGRYTCKVKNSGRYVWSHVILKVLVRPSKPKCELEGEPTEGSDLTLQCESASGTKP
                     IVYYWQRIREKEGEDEHLPPKSRIDYNNPGRVLLQNLTMASSGLYQCTAGNEAGKESC
                     VVRVTVQYVQSIGMVAGAVTGIVAGALLIFLLIWLLIRRKSKERYEEEDRPNEIREDA
                     EAPRARLVKPSSSSSGSRSSRSGSSSTRSTGNSASRSQRTLSSEAAPQPGLATQAYSL
                     IGPEVRGSEPKKAHHTTLTKAETTLSTMPSQSRAFQTV"
     exon            121..278
                     /gene="Clmp"
                     /gene_synonym="ACAM; Asam; Ol16"
                     /inference="alignment:Splign:2.1.0"
     exon            279..480
                     /gene="Clmp"
                     /gene_synonym="ACAM; Asam; Ol16"
                     /inference="alignment:Splign:2.1.0"
     exon            481..648
                     /gene="Clmp"
                     /gene_synonym="ACAM; Asam; Ol16"
                     /inference="alignment:Splign:2.1.0"
     exon            649..771
                     /gene="Clmp"
                     /gene_synonym="ACAM; Asam; Ol16"
                     /inference="alignment:Splign:2.1.0"
     exon            772..913
                     /gene="Clmp"
                     /gene_synonym="ACAM; Asam; Ol16"
                     /inference="alignment:Splign:2.1.0"
     exon            914..3904
                     /gene="Clmp"
                     /gene_synonym="ACAM; Asam; Ol16"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccgcgccct gctcacagaa ggtccgtcgg ctgggctcgg tcgccctgca gccaggctgc
       61 gctgagccgg gaagtgcccg tgtccgggga tcgggatgtc cctcttcttc ctctggctag
      121 taacctatta tgttggaacg ctgggaactc acactgagat caagagagtg gcagaggaaa
      181 aggttacctt gccctgtcac catcaattgg gacttcctga gaaagacacc ctggacattg
      241 aatggctgct cacggataat gaagggaacc aaaaagtggt tattacgtat tccagtcgtc
      301 atgtctacaa taacttgact gaggagcaga agggccgagt ggcctttgcc tccaacttcc
      361 tggcgggaga cgcctccctg cagatcgagc ctctgaaacc cagtgatgaa ggcagataca
      421 cctgcaaggt gaagaattca ggacgctatg tctggagcca cgtgatctta aaagtgctag
      481 tgagaccatc caagcccaag tgtgagttgg aaggagagcc gacggaagga agtgacctga
      541 cgctacaatg tgagtctgcc tctggaacca agcccattgt gtattattgg cagcggattc
      601 gggagaagga gggagaggat gaacacctgc cacccaaatc tagaatcgat tacaacaacc
      661 ctggccgagt gctgctgcag aacctcacca tggcctcctc tgggctctac cagtgcacag
      721 caggcaacga ggctggaaag gagagctgcg tggtacgagt gactgtacag tatgtgcaga
      781 gcattggcat ggttgcagga gcagtgacag gcatagtggc gggagctctg ctcattttcc
      841 tcttgatatg gctcctaata cgaaggaaaa gcaaagagag atatgaggaa gaagacagac
      901 ctaatgaaat ccgagaagac gctgaagcgc cccgcgcccg ccttgtgaaa cccagctcct
      961 cttcctcagg ctcccggagc tctcgctctg gctcctcctc cacccgctcc accgggaaca
     1021 gtgcctccag aagccagcgg acgctgtcga gtgaagcagc accacagccc gggctagcca
     1081 cccaggcata cagcctaata ggaccggaag tgagaggttc tgaaccaaag aaagcccacc
     1141 atacgaccct gaccaaagca gaaaccacac tcagcacaat gcccagccag agcagagcct
     1201 tccaaactgt ctgacttaga gcggtcttgg cttgcacttt cccaaaagtc aggatcttag
     1261 cctagtcact ggagctcgcc caccagccac gcaagcccct cagccagatt cgatctcact
     1321 taagtagccg cagaaatggc acggaccagt tctgaccagc accctcctta tgtaggatac
     1381 caaacagaca gaaggacgaa ggtggacctc taaaggcacc tcactgtgcc ttcagacaga
     1441 gtggaggagg ggaggggccc aagcttattt ggtgaaaata ggggaaaggt gaggctgcac
     1501 acacctgaaa catcttacct aggaagttgc aagtcaccac agtcaagaag aagcgggaat
     1561 ctcatagatc aattttctat tcatttctgc aaatttattg gattagtgtg attattcaga
     1621 tagtcaaaac agaagcccac gccttataat atacctatct gcaacatgta ccaggagaac
     1681 tgcgtttaag aaattcacat taaaaaaaaa aaaaaaaaaa ggaggaggaa acacattttt
     1741 tttctacttt gacttgactt cttgtgtcgt gaggtctgaa cgttaattgg ggaggatttg
     1801 aaatggtggg agacagagaa aaaaagggat ttttctctta ccccaccagc agtcaatctt
     1861 cctatttcca tggaacccta aaataacaaa taaggaggga gtccaaccaa gatgggacac
     1921 ggttctctga agagctttcc gttttgttat tcagaggatc gtcaacagat atcaaaacta
     1981 ttatcccggg gcagttgcgg ctcattactc cgattgaccg actcccctaa agacttctct
     2041 gctggatgtt tctagaagaa acagatgctc actacatgtc acttaatgaa tgtccttagg
     2101 gacagtcctc tagagaaagt ctctcaggga tgttgaaaga tccccttgca taccgcgtcc
     2161 tactcctctt tctgtgaaca tgtgaaacca gaatttcaag actggttgga atgagaggga
     2221 gagtagacct ttctctcagt aggtcaaagg acatttgaca ctggcccgaa acttggcgat
     2281 tctcccattt ctttcatttt agaaggatgc gaatgtggga cttttgatga ttctaggcct
     2341 taaatttcca gcggtcattt cctaaaggca ctgagaaccc catacccctt ctcactcccc
     2401 gccgaggggc tgaactgtat cctcaaggtc ttccttctca gcggtagacg cggacaacag
     2461 cgttgctgtg ggctgtaagg aatgaactac cattagggag ccggtggtga gcgaaacaag
     2521 tgggtggtgg gagcgggttc agctaatgtc tgttaacatg tttgctgttg gcatctggga
     2581 aagaattagc agaaaggatt tactaccagc aaaagtatcg gtacactcac acatggagaa
     2641 gaaaggtgtc tgagaaatgt aaaagagggg gaaaaagcag cctctccagg ataagtaact
     2701 tgccttttag atggtttcga tgatcagggc actttaaggc acagctgcta agcctgaatg
     2761 agcccttcaa ggcaaagtca ctggtcacgc gggtggagca gagcgtttcc ttgtgttgac
     2821 cagggcaaag gctagggcaa agaggaagga agccactgtg gctgttgcaa tgaagtagac
     2881 tctgaaaaag gactcagatg ctgacaggga aaaggttgat actcactacc gccccgtgtc
     2941 tctggcttcc gactcctacg tttaattgat ataagcgcat cctcacagga tgtacacaca
     3001 tttccttcta aagtgcctag gaaatgatgc ttgcgttaag ttgtctgggt tcctttgggt
     3061 gggctttgtg catgctaaag tgactgtcct cacctaagtt ctgtcttcct tttaaagagg
     3121 tagaaataag agacactgag ggaacaacac aggtgcctgt ccatttgaga gaaccggcat
     3181 atttgaatgc ttcttatact aactcttatc tcattgtaag aatttttttt ttaagcccct
     3241 tcctctgact acatgtttat tcttcttggt ggatggtatc caagcaaatg tctcttctgc
     3301 tatgtaattc tgagcattct cattcctgga gtccctgagc caagcaagct tacgatgaag
     3361 gctgcagctg tgctgtcatg agcgaacgat tttctcaccg ctccctgcct tggagtgtcc
     3421 ggtttcctgt ctgtgctttg caagcaggga tcagtccccg tggtccgaaa aggaaattcc
     3481 agttctttaa atttgttatt agaaactaag accattgaat acccgaatta ctttggaaat
     3541 tcttctcaat ggaaaactac aataaaatgc accaaacaga ttacactagg agctgagaaa
     3601 ttctgagaga taagggcctg aagtcttagt aatgacagag cctcagaatc agccattcat
     3661 gtttaaatat gagcccgaag acagagtgag agccatgacg ggctccaaac cttactccat
     3721 tgactttgcc aaccaagcca gctgagtctt taatgtgaaa cagatagaaa agggaaaaaa
     3781 ataactgatg ggtaaaagca aaaaaaaaat taataataat aaatgtttgt aagaaaatgc
     3841 agatggggga atgtgtatgt ttaaagaata accgtttcaa taaaatgtat aagccaaact
     3901 taaa
//
