LOCUS       NM_001106755            4069 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus calmin (Clmn), mRNA.
ACCESSION   NM_001106755 XM_001068038 XM_234500
VERSION     NM_001106755.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4069)
  AUTHORS   Marzinke,M.A. and Clagett-Dame,M.
  TITLE     The all-trans retinoic acid (atRA)-regulated gene Calmin (Clmn)
            regulates cell cycle exit and neurite outgrowth in murine
            neuroblastoma (Neuro2a) cells
  JOURNAL   Exp Cell Res 318 (1), 85-93 (2012)
   PUBMED   22001116
REFERENCE   2  (bases 1 to 4069)
  AUTHORS   Marzinke,M.A., Henderson,E.M., Yang,K.S., See,A.W., Knutson,D.C.
            and Clagett-Dame,M.
  TITLE     Calmin expression in embryos and the adult brain, and its
            regulation by all-trans retinoic acid
  JOURNAL   Dev Dyn 239 (2), 610-619 (2010)
   PUBMED   20014094
  REMARK    GeneRIF: sensitive to retinoid status during early gestational
            stages; expression relegated to postmitotic neuronal cells in adult
            brain
REFERENCE   3  (bases 1 to 4069)
  AUTHORS   Ishisaki,Z., Takaishi,M., Furuta,I. and Huh,N.
  TITLE     Calmin, a protein with calponin homology and transmembrane domains
            expressed in maturing spermatogenic cells
  JOURNAL   Genomics 74 (2), 172-179 (2001)
   PUBMED   11386753
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Jan 26, 2008 this sequence version replaced NM_001106755.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.23961.1,
                                           SRR26643293.37082.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-187               JAXUCZ010000006.1  129571841-129572027 c
            188-249             JAXUCZ010000006.1  129513395-129513456 c
            250-345             JAXUCZ010000006.1  129509413-129509508 c
            346-429             JAXUCZ010000006.1  129506107-129506190 c
            430-522             JAXUCZ010000006.1  129500328-129500420 c
            523-713             JAXUCZ010000006.1  129498426-129498616 c
            714-907             JAXUCZ010000006.1  129492933-129493126 c
            908-990             JAXUCZ010000006.1  129491159-129491241 c
            991-2670            JAXUCZ010000006.1  129488224-129489903 c
            2671-2867           JAXUCZ010000006.1  129484250-129484446 c
            2868-2928           JAXUCZ010000006.1  129481882-129481942 c
            2929-2999           JAXUCZ010000006.1  129481222-129481292 c
            3000-4069           JAXUCZ010000006.1  129478272-129479341 c
FEATURES             Location/Qualifiers
     source          1..4069
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q32"
     gene            1..4069
                     /gene="Clmn"
                     /note="calmin"
                     /db_xref="GeneID:299285"
                     /db_xref="RGD:1306741"
     exon            1..187
                     /gene="Clmn"
                     /inference="alignment:Splign:2.1.0"
     CDS             106..3171
                     /gene="Clmn"
                     /codon_start=1
                     /product="calmin"
                     /protein_id="NP_001100225.2"
                     /db_xref="GeneID:299285"
                     /db_xref="RGD:1306741"
                     /translation="MAAQEWDWFQREELIGQISDIRVQNLQVERENVQKRTFTRWINL
                     HLEKCDPPLEVTDLFVDIQDGKILMALLEVLSGRNLLHEYKSSSHRIFRLNNIAKALK
                     FLEDSNVKLVSIDAAEIADGNPSLVLGLIWNIILFFQIKELTGNLSRSSPSSSLSPGS
                     GGTDSDSSYPPTPTTERSVAVAVKDQRKAIKTLLSWVQRKTRKYGVAVQDFAGSWRSG
                     LAFLAVIKAIDPSLVDMKQALEDSTRENLEKAFRIAHDSLHIPRLLEPEDIMVDMPDE
                     QSIVTYVAQFLERFPELDPEDFVNPDKEAPIESTFVRIKESPSEQESRVLLLSQNGEQ
                     PYTVSHETSHPPPDKVFVCDQLESPTGFSLGSAPSHKLPDSPTDFMHQIIDQVFQASM
                     GNTESTTEPTPESSILSTRKDGRRSNSLPVKKSVHFETDLHKDASCSKDPFYSSEFRF
                     EGSPKATKELSKQDGHASLAEVSKEKKPEQEARLVLEAASDKAPEDTIVDTDAMSQDA
                     QLPQDSSFCNGNVENPASLGEKGPSPPSPRDNTILANSVELKVPLLTVEPMDKDDYFE
                     CIPLKASKFNRDLVDFASTSQAFVEDPSSHKKTPGEEEGSENYTEKPGKRKSKSPHAE
                     TESTESRLEPIKLETPPKDPEQEDQGHTLPPETAADKKPEVYEKAKRKSTRHHSEEEG
                     EAEGGLSAVGGEMPSNPPSTSVSLETLRSHSEEGLDFKPSPPLSKISVIPHDLFYYPH
                     YEVPLAAVLEAYAEGGEDLKSEDADLEHPDGSYLQDSREEEEEEDEEEEEAHSSHSSC
                     NFSLPVDNSYPRVNDHVSHVDGSSEGPTSASEPGSPPSHEDHQPMETKENGPVESQQS
                     QEPPTPELSTKPLEEKLTEVPTSSKKKEKRKHMDHVESSLFIAPGTVRSSDDLEENPC
                     EHKVPSRNSHSDSSIYIRRHTNRSLELDHFSYVQLRNAADVDDRRNRLLNRTGTNSSG
                     EAVPLGSQSPPNDSLTQFVQQPDVIYFILFLWLLVYCLLLFPQLDVSRL"
     exon            188..249
                     /gene="Clmn"
                     /inference="alignment:Splign:2.1.0"
     exon            250..345
                     /gene="Clmn"
                     /inference="alignment:Splign:2.1.0"
     exon            346..429
                     /gene="Clmn"
                     /inference="alignment:Splign:2.1.0"
     exon            430..522
                     /gene="Clmn"
                     /inference="alignment:Splign:2.1.0"
     exon            523..713
                     /gene="Clmn"
                     /inference="alignment:Splign:2.1.0"
     exon            714..907
                     /gene="Clmn"
                     /inference="alignment:Splign:2.1.0"
     exon            908..990
                     /gene="Clmn"
                     /inference="alignment:Splign:2.1.0"
     exon            991..2670
                     /gene="Clmn"
                     /inference="alignment:Splign:2.1.0"
     exon            2671..2867
                     /gene="Clmn"
                     /inference="alignment:Splign:2.1.0"
     exon            2868..2928
                     /gene="Clmn"
                     /inference="alignment:Splign:2.1.0"
     exon            2929..2999
                     /gene="Clmn"
                     /inference="alignment:Splign:2.1.0"
     exon            3000..4069
                     /gene="Clmn"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtccgcccgc ggcggggccg gcccttctcc ctcccaccag ccccgcgctc gccgcccacc
       61 gctcgtcgcc cgctgcccgc cgccccggcc cgccgcgcgc gctccatggc tgctcaggag
      121 tgggactggt tccagcgcga ggagctcatc gggcagatca gcgacatccg tgtgcagaac
      181 ctgcaagtgg agagggaaaa cgtgcagaag aggactttca cacgatggat aaacctacac
      241 ctcgaaaagt gcgacccacc tctagaagtt acggacctgt ttgttgatat ccaagatggc
      301 aaaatcctaa tggctttgtt agaagttctc tctgggcgaa atctgctaca tgaatacaaa
      361 tcctcatcac atcgtatttt tcggttgaac aacatagcga aagcactcaa gtttctggaa
      421 gatagcaatg tcaagctggt tagcatcgac gcggcagaga tagctgacgg caacccctcg
      481 ctggttctcg ggctgatatg gaatatcatc ctcttcttcc agataaagga gctcacaggc
      541 aacctcagca ggagttctcc atcttccagc ttgtcacctg gctccggggg caccgactca
      601 gattcttcct acccaccaac ccccaccaca gagaggagtg tggcagtggc agtgaaagac
      661 cagaggaagg ccatcaagac cctgctgtca tgggtgcaga ggaaaaccag gaagtatggt
      721 gtggcggtcc aagacttcgc tggcagttgg aggagtgggc tagctttcct ggctgtcatc
      781 aaagctattg accccagcct cgtagacatg aagcaggctc tggaagattc tacccgggaa
      841 aatctagaga aggcattccg cattgcacat gattccctgc atatccccag gctcctcgag
      901 ccggaagaca tcatggttga catgccggat gagcagtcca ttgtgactta tgtggcccag
      961 tttctagagc gctttccgga gttggatccc gaggattttg tgaatccaga caaagaagcc
     1021 cctatcgagt ccacctttgt ccgaatcaaa gaaagcccct ctgagcaaga gagccgagtc
     1081 ctcctcctta gccagaatgg agagcagccc tacactgtca gccatgagac cagccaccca
     1141 ccgcctgaca aggtcttcgt ctgtgaccag cttgagagcc ccacgggctt tagtctgggt
     1201 agtgctccca gccacaaact gccagacagc cccacagact ttatgcacca gattattgac
     1261 caagtcttcc aggcgagcat ggggaacact gaatccacca cagagccaac tccagagtca
     1321 tccatcttgt caaccagaaa ggatgggagg aggtccaact ctttgcctgt caagaaaagc
     1381 gtccacttcg agactgactt gcacaaggat gcctcgtgca gcaaggaccc tttctacagc
     1441 tccgagttcc gctttgaggg gagccccaag gcaaccaagg agctgtcaaa gcaggatggc
     1501 catgcctcat tggctgaggt ttccaaggaa aagaaaccag aacaggaagc caggctagtg
     1561 ctggaagctg cctcagacaa ggcccctgaa gatactattg ttgacacaga tgctatgtcc
     1621 caagatgctc agcttcccca ggactcctca ttctgtaatg gcaatgtaga gaatccagcc
     1681 agtctaggtg agaaaggccc ttcgccacca tcccctagag ataatactat cctggccaac
     1741 tccgtggagc tcaaggttcc gctgctgacc gttgagccta tggacaaaga cgactacttt
     1801 gaatgtatcc cgctaaaagc ttccaagttt aacagggacc tagtagattt cgcctccacc
     1861 agccaggctt ttgttgagga tccttcgtcc cacaagaaga cacctgggga ggaagagggt
     1921 tctgaaaatt acaccgagaa accaggaaaa aggaaatcaa agtctcccca tgcagaaaca
     1981 gagtccaccg agtccagatt ggagcccatc aagctcgaga ctcctcctaa ggatcctgag
     2041 caagaagacc aaggccacac tttgccccca gaaacagccg cagacaaaaa gcccgaagtg
     2101 tatgaaaagg ccaagaggaa atccactcgt catcacagcg aggaagaagg agaagcagaa
     2161 ggcgggctct ctgcagtcgg cggagaaatg ccatccaatc ctccaagtac cagcgtcagc
     2221 ctggaaaccc tcagaagcca cagcgaagaa ggtttggatt tcaaaccttc gccacccctc
     2281 tcaaagatct ccgtcatccc ccatgacctg ttctactacc cacattacga ggtgcccctg
     2341 gccgcagtgc tagaggccta tgcggaaggg ggcgaggatt tgaaaagtga agatgcagac
     2401 ctagaacatc cagatgggag ctatctgcag gactccaggg aggaggagga ggaggaggac
     2461 gaggaggagg aggaggccca cagctcccac agcagctgca atttctcctt gcctgttgac
     2521 aacagctacc ccagggtcaa tgaccatgtg tcccatgttg acgggagttc tgagggaccc
     2581 acatcagcct cggaacctgg ttctccgccc tcccatgagg accaccagcc aatggaaacc
     2641 aaagagaatg gccctgtgga aagccagcag tcccaagaac ccccaacccc agaactgtcc
     2701 acaaagccat tagaagaaaa gttaacggaa gtcccaacta gcagtaaaaa gaaggaaaaa
     2761 aggaaacaca tggaccacgt agaaagttca ttatttatag ctcctgggac ggtccgctcc
     2821 tcagatgacc ttgaagaaaa cccctgcgaa cacaaggtcc cttccaggaa tagtcacagt
     2881 gactccagca tttacattcg gcgacacact aataggtctt tggaattgga ccattttagc
     2941 tatgttcaat tgaggaacgc agccgatgtg gatgacagga gaaacagact gttaaacagg
     3001 actggcacca actcctctgg agaagccgtg cccctgggga gccagagccc gcccaacgac
     3061 tctctgacgc agtttgtaca gcagcccgac gtgatatatt tcattctctt cctctggctc
     3121 ctggtttact gcttactact cttcccccag ctcgatgtca gccggctctg aaacactcgt
     3181 ctggagaata aaaagacagg accctggcca gggcggagtc tttctaccgc atcttactgt
     3241 ctgttcaggg ttgagcctcc tgtgcagaga cgggagccct cagaaggagc gcaggcccca
     3301 ccccctgttg ctgtctggtt cagtctttgc tcacatttcc tctgattctc tcagacccga
     3361 gagtgtgctt tcttcccaga ctgtgtgctc ccagctcagg tttgaggctg gatctgtgga
     3421 cgggattcct ccttatgtgc cttgtttggt cagatgcgag tccttattaa tgtgcaccct
     3481 gaagctgggt cttagcatgt ccacatgcaa gttcctaagg tcctggagga gcttgagtta
     3541 tttactttta tctcagggga gggtctgcct gactccgaga aaggacggag tccacggtag
     3601 gaagaaaggt agcctgtttg cctccaagtg tgagtgttcg agtgaagaac ctactcccca
     3661 tatctgcccg ggcctgatca tctgtcgctg gggtagttaa acagcacatt ctgcctgttc
     3721 accagaaagg acacctgggc attggcagac tccgaagagg gtgctctgcc aggttccttg
     3781 tgagctacag cccgttatgt ctttcacctt ggtgttcttg gagggttggg tttttaattc
     3841 acttttttat tgattgaatt gaaatacagc tgtagtttca acccttccca tcagtagggt
     3901 cttctatcag atgaaagcca gaggggggcc agtctagatt tgcatgaaaa actaggccct
     3961 ggctgactgg cctagcccgg gctctccctt cctctgctga gttttctgta gggaacctga
     4021 actccctaca gggccgcatg gggtaaccca ggggcctgga agtggccag
//
