LOCUS       NM_001013942            2266 bp    mRNA    linear   ROD 08-MAR-2024
DEFINITION  Rattus norvegicus CAP-GLY domain containing linker protein family,
            member 4 (Clip4), mRNA.
ACCESSION   NM_001013942 XM_216642
VERSION     NM_001013942.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2266)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2266)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 2266)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC081910.1.
            
            [WARNING] On Apr 15, 2024 this sequence was replaced by
            NM_001013942.2.
            
            On Apr 20, 2005 this sequence version replaced XM_216642.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC081910.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q14"
     gene            1..2266
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /note="CAP-GLY domain containing linker protein family,
                     member 4"
                     /db_xref="GeneID:298801"
                     /db_xref="RGD:1311049"
     exon            1..167
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            168..231
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            232..379
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     CDS             247..2046
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /note="restin-like protein 2; restin-like 2"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 4"
                     /protein_id="NP_001013964.1"
                     /db_xref="GeneID:298801"
                     /db_xref="RGD:1311049"
                     /translation="MTIEDLPDIPLEGSSLIGRYPFLFTGSDTSVIFSISAAPMPSDC
                     EFSFFDPNDASCQEILFDPKTSVSELFAILRQWVPQVQQNIDIIGNEILKRGCNVNDR
                     DGLTDMTLLHYTCKSGAHGIGDVETAVKFAAQLIDLGADASLRSRWTNMNALHYASYF
                     DVPELIRVLLKTSKPKDVDATCSDFNFGTALHIAAHNLCAGAVKTLLELGANPAFRND
                     KGQIPADVVPDPVDMPLEMADAAAIAKEIKQMLLDSMPLPCTITKATLPNCDITTSKA
                     MLTTLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYF
                     KCAPKYGIFAPLSKITKVKDGRKNITHTPSTKATLHARSQKVDVAHVTSKVNSGLMTS
                     KKENASESTLSLPRSEELKTVAKNDATQPGCISSSSSTSSLDHKQSHPKKLSTSSSSG
                     KKTLSKSPSLPSRASAGLKSSTTSAANNTHREGALRLGERVLVVGQRVGTIKFFGTTN
                     FAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRLSDSLDTLSEISS
                     NKQNHSYPGFRRSFSTTSASSQKEINRRNAFAK"
     exon            380..519
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            520..613
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            614..775
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            776..894
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            895..1131
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1132..1267
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1268..1408
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1409..1498
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1499..1645
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1646..1780
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1781..1904
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1905..1969
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1970..2239
                     /gene="Clip4"
                     /gene_synonym="RGD1311049; Rsnl2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgtggctttc tggaaccgga atctccctag ggcctgaggg agcccattat gaaaacaccc
       61 gtttccacac aaccccagct aacacgctag gcaattcgta ctctgctgag gaaggctgat
      121 gaggaactga acatttttga cattgagaag acagtcacat gatttgggca gagagtcaca
      181 tcgccagtga atacaggaga gaagaagact ttgcgagttc ggctaagcac tgtggccttc
      241 tagaagatga ccatagagga cctcccggat atccccctgg aaggaagctc tttgatcgga
      301 agatacccat tcttattcac aggctccgac acttccgtta tcttttccat ttctgcagca
      361 ccgatgcctt cggattgtga gttttctttt tttgatccga atgatgcatc atgccaggaa
      421 attctcttcg atcccaaaac ttcagtctca gaattatttg ctattttaag acagtgggtt
      481 cctcaggtcc agcagaacat agacattatt ggaaatgaga ttcttaagag aggctgcaac
      541 gtgaatgata gagatggact gacggatatg actctgttac attacacttg caagtctggg
      601 gctcatggca ttggtgacgt tgagacagct gtaaaatttg cagctcaact tattgacctg
      661 ggagcagacg ctagtttgcg gagtcgctgg acaaacatga atgccttgca ttatgcttca
      721 tactttgatg ttccagagct tatcagagtg cttttgaaga catctaaacc aaaagatgtg
      781 gacgccactt gcagtgactt taattttggg acagccctgc atatcgcagc acataacttg
      841 tgtgcaggag ccgtgaaaac cttgctggag ctgggagcaa accctgcatt taggaatgac
      901 aaaggacaga tccctgcaga tgttgttcca gacccagtgg acatgcctct ggagatggcc
      961 gatgccgcag caatcgcgaa ggaaatcaag cagatgctct tggattcaat gcctctgccc
     1021 tgtaccatca ctaaggccac gcttccaaac tgtgacatca ccactagcaa ggccatgctg
     1081 acaactcttg gcctgaagtt gggagaccgt gtcgtcatcg caggacagaa ggttggaaca
     1141 ttaagatttt gtggaacaac ggagtttgca agtgggcagt gggctggcat tgaactggat
     1201 gagccagagg ggaaaaacaa cggcagtgtt gggagagtcc agtatttcaa gtgtgcccca
     1261 aaatatggta tttttgcgcc actttcaaag ataactaaag taaaagatgg gagaaaaaac
     1321 atcacacata ctccttccac aaaagccacc ctccatgccc ggtcccagaa ggtcgatgta
     1381 gcccacgtca catccaaagt aaattccgga ttgatgacat ccaaaaaaga gaatgcttct
     1441 gagtccacac tgtcactgcc taggagtgaa gaactgaaga ctgtagccaa aaacgatgct
     1501 acccaacctg ggtgcatcag cagctcctcc tccacgtcct ccctggacca caagcagagc
     1561 cacccaaaga agctgagcac aagcagcagc agtggcaaga agaccttgag caaaagcccc
     1621 tctctcccgt ccagagccag tgctggtttg aaatcttcaa caacatctgc agcaaataac
     1681 actcaccgtg aaggagcact ccgccttgga gaaagggtgc tggtggtagg ccagagagtg
     1741 gggaccatta agttctttgg gacaacaaac tttgctccag ggtattggta cggcatagag
     1801 ctggagaagc cccatgggaa gaatgacggt tcggttggag gtgtgcagta ttttagttgc
     1861 tctccgagat atggaatatt tgcgccccca tccagggtac agaggctgtc agattccctg
     1921 gatacgcttt cagaaatatc ttcaaataaa cagaatcatt cttatcctgg ttttaggaga
     1981 agtttcagca caacctctgc ttcttctcaa aaagagatta acaggagaaa tgcttttgcc
     2041 aagtgagtat taagaagcct tagaaaactg cctttcaaga tgagcatgcc aggattcggt
     2101 gaaggaagaa aaatggaatt ttgtttcgta cgccctgctc ggtagaatgt tagcacgtaa
     2161 gagagaaggt gtgaccggtg tgttgagttc ttcccttctt taaaagctca attaaacatg
     2221 tcacaagtgg ctaaaagcaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//
