LOCUS       XM_006249136            4898 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CAP-GLY domain containing linker
            protein 2 (Clip2), transcript variant X2, mRNA.
ACCESSION   XM_006249136
VERSION     XM_006249136.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006249136.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4898
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4898
                     /gene="Clip2"
                     /gene_synonym="CLIP-115; Cyln2"
                     /note="CAP-GLY domain containing linker protein 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 29 ESTs, 3 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 235 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:29264"
                     /db_xref="RGD:62019"
     CDS             460..3498
                     /gene="Clip2"
                     /gene_synonym="CLIP-115; Cyln2"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 2
                     isoform X2"
                     /protein_id="XP_006249198.1"
                     /db_xref="GeneID:29264"
                     /db_xref="RGD:62019"
                     /translation="MQKPSGLKPPGRGGKHSSPVGRPSIGSASSSVVASASGSKEGSP
                     LHKQASGPSSAGATTTVSEKPGPKAAEVGDDFLGDFVVGERVWVNGVKPGVVQYLGET
                     QFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQPAAEGSGSDAH
                     SVESLTAQNLSLHSGTATPPLTGRVIPLRESVLNSSVKTGNESGSNLSDSGSVKRGDK
                     DLHLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPK
                     FGLFAPIHKVIRIGFPSTSPAKAKKTKRMAMGVSALTHSPSSSSISSVSSVASSVGGR
                     PSRSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICE
                     VEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRV
                     EEESITKGDLELTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAET
                     LRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQ
                     QATTENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKM
                     EHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEAQEELAGLQQHWRAQLEEQASQHRL
                     ELQEAQDQCRDAQLRVQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEA
                     QSRQEAERLREKLLVAENRLQAVESLCSAQHSHVIESNDLSEEKIRMKETVEGLQDKL
                     NKRDKEVAALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHD
                     ASGQLVHISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKEQKLKD
                     DIRGLREKLTGLDKEKSLSEQKRYSLIDPASAPELLRLQHQLVSTEDALRDALDQAQQ
                     VERLVEALRGCSDRTQTISNSGSANGIHQPDKAHKQEDKH"
ORIGIN      
        1 ccggcccctt ttgttcgctc tctggccgct gagctctcct ggcgctcggc atctctcggc
       61 tgggctcggc tcaccttggc agggctccac ggggctccgc tctgctcggc ttctctcgcc
      121 tccgccccgt tgggctcgga tcttcccgac tcagccccgc tcggctcggc tccgcctcgg
      181 ggcgcgcaag cagcggccga gcttacagaa tcggcccctc cctctatccc ttctggccgt
      241 agagcctgtc cgaggcccgg actcagaacg cggagaacgg gttagggtag cggccgggcg
      301 tgaggggacc ggcacagcat ccttgttccc aggacgcgcg gaccaagagg aagcgagggg
      361 tgtcgggtcc tgttcgctgc tggagctcca aggtgaccaa ggatggcaga gaggatatga
      421 ccggcggctg ccgtcgtctg ccctcctagt ggcatcacca tgcagaagcc cagtggcctg
      481 aagccccctg gccgaggggg gaagcactcc agtcccgtgg gtaggccctc catcgggtct
      541 gcctcatctt ctgtggtggc atcggcgagc ggctccaaag aagggtctcc cctgcacaag
      601 caggcgtcgg gcccctcctc ggctggagcc accactactg tctccgagaa gccaggtcca
      661 aaggcagccg aagtgggtga tgacttcttg ggagacttcg tggtgggcga gagggtgtgg
      721 gtgaatggcg tgaagcccgg cgtggtgcag tacctgggtg agacacagtt tgcgccaggc
      781 cagtgggccg gcgtggtctt ggatgatcct gtgggcaaga acgatggagc tgtgggtggc
      841 gtgcgctact tcgagtgccc agctctacag ggcatcttca cacggccctc caagctgacc
      901 cgccagcccg cagctgaggg ctccggcagt gacgcccact cagtggaatc cctcaccgcc
      961 cagaacctgt ccctgcattc tggcacggcc acgcccccac tcaccggccg agtcatcccc
     1021 ctgcgggaga gtgttctcaa cagctccgtg aagacgggca atgagtctgg ctccaacctc
     1081 tcggacagtg gttctgtgaa gcgtggtgac aaggacctcc acctgggaga ccgtgtgctg
     1141 gttggtggga cgaagaccgg tgtggtacga tatgttgggg agacggactt tgccaaaggc
     1201 gagtggtgtg gtgtggagct ggacgagccc cttgggaaga acgatggggc agtggcaggc
     1261 accaggtact tccagtgccc acccaagttc ggtctctttg caccaatcca caaggtcatc
     1321 cgaattggct tcccatctac cagtccagcc aaggccaaga agaccaagcg catggctatg
     1381 ggtgtctcag ccttgaccca cagccccagc agttcttcca tcagctctgt cagctctgtg
     1441 gcctcctctg ttggtggccg gccgagccgt agtggcctgc tcacagagac ctcttcacgc
     1501 tatgcccgga agatctcagg caccacagcc ctgcaggagg cactgaagga gaaacagcag
     1561 cacatcgaac agctgctggc tgagcgtgac ttggagaggg cagaagtagc caaggctacc
     1621 agtcatatct gtgaggtgga gaaggaaatt gccctgctga aggcacagca tgagcagtat
     1681 gttgcagaag ctgaggagaa gctgcagcgg gcacggttgc tggtggaaaa cgtgaggaag
     1741 gagaaggtgg atctgtccaa tcagctggag gaggagagga ggaaggtgga ggacctgcag
     1801 ttccgggtgg aagaagagtc catcaccaaa ggagacttgg agctgaccac agtggctgag
     1861 aagtctcggg tgctgcagtt agaagaagag ctgagcctgc ggcgtggtga gatcgaagag
     1921 ctacaacact gcctcctcca gtcaggtcca ccacctgcgg accacccaga ggccgctgag
     1981 accctgcggc tgcgagagcg gctgctgtcg gctagcaagg agcaccagcg ggacagcacc
     2041 ctgctccagg acaagtatga gcacatgcta aagacgtacc agacagaagt ggacaagctt
     2101 cgggcagcca acgagaagta cgctcaggaa gtggcagacc tcaaggccaa ggtccagcag
     2161 gccaccaccg agaacatggg gctcatggac aactggaaat ccaagctgga ctctctggcc
     2221 tccgatcacc agaaatcttt agaagacctg aaggccacgc tgaactctgg cccaggcgcc
     2281 cagcagaagg agattggcga gctgaaggcc ctggtggagg gcatcaaaat ggagcaccaa
     2341 ctggagttag ggaacctgca ggccaagcat gacttagaga cggccatgca tgggaaggag
     2401 aaagagggcc tgcggcagaa gctgcaagag gcccaggagg agctggccgg gctgcagcag
     2461 cactggaggg cacagctgga ggagcaggcc agccagcacc ggctggagct acaagaagcc
     2521 caggaccaat gtcgtgacgc ccagctacgt gtgcaggagc tggagggact ggatgtggaa
     2581 taccgcggcc aggctcaggc catcgagttc ctcaaagaac agatctcgct ggctgaaaag
     2641 aagatgctgg attacgagat gttgcagagg gcggaagccc agagcaggca ggaggccgag
     2701 cggctgcggg aaaagcttct ggtggctgag aatagactgc aggctgtcga gtccctgtgc
     2761 tcagcccagc acagccatgt gatcgagtcc aatgaccttt ctgaggagaa gattcggatg
     2821 aaggagactg tggagggcct gcaggacaag ctgaacaaga gggacaaaga ggtggcagcc
     2881 ttgacatccc agatggacat gctcagggcc caagtaagtg ctctcgagaa caagtgcaaa
     2941 tcaggagaga agaagataga ctctctcctg aaggagaaga ggcggctgga ggcagagctg
     3001 gaggccgtgt ctcggaagac ccatgatgcc tctggccagc tggtccacat cagccaagag
     3061 ttgctacgga aggagaggag tctgaatgag ctgagggtgt tgctgttaga agccaatcgg
     3121 cactccccag ggcccgagag agacctgagc cgtgaggtac acaaagctga atggcgaata
     3181 aaggaacaaa aactgaaaga tgacatccgg ggcctgcgtg aaaagctgac cgggctggac
     3241 aaggagaagt ccctgtcgga gcagaaacgc tactccctca ttgacccagc ttcagcgccc
     3301 gagttgctga gactgcaaca tcagttagtg agcacggagg atgccctgcg ggacgcactg
     3361 gaccaggccc agcaggtgga gaggctggtg gaggccctga ggggctgctc agataggact
     3421 cagaccatca gcaattccgg ttctgccaat ggtatccacc agccagacaa ggcccacaaa
     3481 caggaggaca aacactgacc cccaagggac accatggacc ggccctactc acaccagaag
     3541 ccctgccagg cttcccagca gcgccacctt caggcaggag ccagaacttt ccctttggag
     3601 atgagactgt gtttgtaacg ataattgtcc tcactgccgt ggacacatcc cacctgaacc
     3661 ccctgccgga ccaggaggct cccacagaca cggccttcca cagagcgcgg tacagctggg
     3721 cccagccctg gaggacctct cttgtcccaa ggagcttctt gaatttgcgg aggctgaagc
     3781 gatccagttg ggcctctctt ggctatagca ggctgccccg aggcttgtct gggcacccgg
     3841 gtacttcccc atctcccttt ccttctggtg tcccccaggt cccctgcagg cccctgagag
     3901 gtggagcagg gctcctgctt ggacgcgtaa cacaccaaga agggcttcag tcttcagaaa
     3961 ctagggaggg gatgcttgac ttcatatgct gatcctctaa cacaatggta caaggtcgct
     4021 tgggcctcta gccagggaag atttgggggt gacaggttcc ttattcctcg acaccacgct
     4081 agtatgcgtt acccacttcc cctctgctgc ccagaaagca ttgagcagac agcttcagta
     4141 ttaggtgagc tcgcaaaccc actcttctta ccttgacctt gagctgggac tggctcaggg
     4201 gcttacagcc aagagcggga agaaaactct ttaaacaaag cattcacgcg gtgttttgct
     4261 gggtgagagg aatcacgctg gttcccttta tttccgggaa cccctgccat gttactccaa
     4321 agaccccagc aacccacaga gggtcctgct tctatcttcc cagggcggga accacagtgg
     4381 gtgacaggta tggtaagtcc ttaggattgg cccaggtggc ctctgtgagc accattagac
     4441 accagcaggt ggcgctcacg ctcttgtcct tagggagaag ctgaattagc agccccacag
     4501 cccaaccccc tgcttcctgt tggcttttgg gtagcacttg ccgttaacaa cagcagccta
     4561 gagcctagaa ttgacgcttt agtggcccaa ctgcagagcc agtatatcgc tctttccagc
     4621 acaatcgggc agctcacaga ttaggaatta acagccaaag gctcccacag tagggaccag
     4681 acggggctga gccccaccct ggagtgggct tgcacctggt aggtgtgcaa gaagccattt
     4741 ccccataagc actggccttt gacggccccc tcagcctacc cggtgtggcc acccagtggt
     4801 ggctcagcca ttccctcccc tccccctccc ctcagtggaa ttgtggaagt gtggcaagtc
     4861 catgttcgga caataaagct tgtgattaag gtacagga
//
