LOCUS       XM_039089739            5502 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CAP-GLY domain containing linker
            protein 1 (Clip1), transcript variant X20, mRNA.
ACCESSION   XM_039089739
VERSION     XM_039089739.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5502
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5502
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 49 ESTs, 1 long SRA read, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 38 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
     CDS             242..4078
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X18"
                     /protein_id="XP_038945667.1"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPLEKTVPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQTAHARAASPLSTAAATMVSSSP
                     ATPSNIPQKPSQPVAKETSATPQISNLTKTASESISNLSEAGSVKKGERELKIGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMATTPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLESSKPPGDVDMSLSLLQEISAL
                     QEKLEVTHTDHQNEVTSLKDHFGTREEMFQKEIKALHAATEKLSKENESLRSKLDHAN
                     KENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQ
                     HEIESLQSKQDSERSAHAKEMESMKAKLMKIIKEKEDSLEAVKARLDTAEDQHLVEME
                     EMLSKLQEAEIKKEKFASASEEAVSTQTSMQDTVNKLHQKEEQFNMLSSELEKLRENL
                     TDMEAKFKEKDEREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEE
                     LQLKLTKANENASLLQKSIGEVTLKAEQSQQEAAKKHEEEKKELENKLLELEKKMETS
                     HYQCQDLKAKYEKASSETKIKHEEILQNFQKMLVDTEDKLKAAQEANRDLMQDMEELK
                     SQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQSELDTLKENNLKTV
                     EELNKSKELLNEENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDE
                     VTSHQKLEEERSVLNNQLLEMKKRESEYRKDADEEKASLQKSISLTSALLTEKDAELE
                     KLRNEVTVLRGENASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNT
                     DVQTEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDPNSYDS
                     DDQEKQSKKKPRLFCDICDCFDLHDTEDCPTQAQMSEDPPHSTHHGSRSEERPYCEIC
                     EMFGHWATNCNDDETF"
ORIGIN      
        1 cggcggcgcg tcacgttctc ttccccgccc cgagccgaag agccggggag gcgggaggcg
       61 gcggccgcgg cggctgctgc tgctgctgct gctactggga ggcaggtgac ggcgaccgac
      121 ggcgtctcag gcgacttaac caagagacta agttctctat agaaacaccc acatttgtat
      181 ggatgattgg ggaaagatag tggcagcaga caagggaaaa gcatcctgac cttccgagaa
      241 aatgagtatg ctgaaaccca gcgggctgaa ggccccgacc aagatcctaa agcctgggag
      301 cacagccttg aagacccctg ctgctgctgc agctccattg gagaagacag tacccagtga
      361 aaaagcctca ggccctccat cctctgagac ccaagaggag tttgtggacg acttccgagt
      421 tggagaacgt gtttgggtga acgggaataa acctggattt atccagtttc ttggggaaac
      481 tcagtttgca ccaggccagt gggctggtat tgttttggat gaacccatag gaaagaacga
      541 cggctcagtg gcaggagtgc ggtatttcca gtgtgagcct ttaaagggca tcttcacccg
      601 accgtcaaag ctaacgagga aggtacaagc agaggatgaa gccaacggcc tgcagacagc
      661 tcacgcgaga gctgcttcac ctctgtccac tgctgcagcc accatggtgt cctcttctcc
      721 agccactccc tcaaatattc cccagaaacc gtcccagcca gtggcaaaag aaacttcagc
      781 gacacctcaa attagcaacc ttacgaaaac cgccagcgag tcaatctcca acctttcaga
      841 ggctggctct gtcaagaagg gagagcgaga gctcaagatc ggagacaggg tgctggtcgg
      901 tggcacgaag gctggcgtgg tccggtttct tggagagact gacttcgcca agggggagtg
      961 gtgtggtgtg gaattggacg aacctttggg gaagaacgac ggtgctgttg ctggaacaag
     1021 gtattttcaa tgtcaaccca agtacggatt gttcgctccc gtccacaaag tgacaaagat
     1081 tggcttccct tctaccaccc cagccaaagc caaagccgct gctgtgaggc gagtgatggc
     1141 caccacgccc gccagcctga agcgaagccc ttctgcctcc tccctcagct ccatgagctc
     1201 tgtggcctcc tctgtgagca gcaagcccag ccggacagga ctattgactg aaacctcttc
     1261 ccgctacgcc cgcaagatct cgggcaccac tgccctccag gaggcgctga aggagaagca
     1321 gcagcacatt gagcagctgc tggctgagcg ggacctggag cgggccgagg tggccaaggc
     1381 taccagccac gtgggggaaa tagagcagga gctagccctg gcccgagatg ggcatgacca
     1441 gcatgtcctg gaactggagg ccaagatgga ccagctgcgt accatggtag aagctgctga
     1501 cagggagaaa gtggagctcc tcaaccagct ggaagaggag aaaaggaagg ttgaggacct
     1561 tcagttccga gttgaagaag aatcaattac caaaggtgat cttgaggtgg ctacagtatc
     1621 agaaaagtcc cgaataatgg aactagaaaa ggacctagcg ttgagagtac aggaagtagc
     1681 tgagctccga agaaggctag agtccagtaa acctcccgga gatgtggata tgtctctttc
     1741 tcttttgcaa gaaatcagtg ctttgcaaga aaagctagaa gtcacacata ctgaccacca
     1801 gaacgaggtg acgtctctga aggaccactt tggaactcgg gaagagatgt ttcagaagga
     1861 gatcaaggct ctgcacgctg ccactgaaaa gctctccaaa gagaacgagt ccttgaggag
     1921 caagcttgac catgccaaca aggagaactc agacgtcatc gctctgtgga agtccaaact
     1981 ggagaccgcc atcgcgtccc accagcaggc aatggaggag ctgaaggtgt cctttagcaa
     2041 agggattgga actgactcgg ctgagtttgc tgagttaaag acacagatag agagactcag
     2101 actagattac cagcacgaaa tagaaagttt acagagtaag caggactccg aacggtctgc
     2161 ccatgctaaa gagatggagt ccatgaaggc caagctgatg aagatcatca aagagaagga
     2221 ggacagcctg gaggccgtca aagcacggct ggacacggcg gaagaccagc acctggtgga
     2281 gatggaggag atgctcagca agctgcagga ggcagagatt aagaaagaaa agtttgccag
     2341 cgcttcagag gaggccgtct ctactcagac aagtatgcaa gatactgtta ataaactgca
     2401 ccaaaaggag gaacagttta atatgttgtc ttctgaactg gagaagctga gagaaaattt
     2461 aacagacatg gaggcaaaat ttaaagagaa ggatgaacgg gaagatcagc tggtaaaggc
     2521 aaaggaaaag ttagaaaatg acattgcaga aataatgaag atgtcagggg acaactcttc
     2581 tcagctgaca aagatgaatg acgaattacg tctgaaggaa aggtctgtgg aagaactaca
     2641 actcaaactt acaaaggcta atgaaaatgc aagtcttctg cagaaaagta tcggggaagt
     2701 aactcttaaa gctgaacaga gtcaacagga agcagccaaa aaacatgaag aggaaaagaa
     2761 agaactggag aacaaattgt tggaactgga aaagaagatg gaaactagcc actaccagtg
     2821 tcaggacctg aaagccaagt atgaaaaagc cagttctgag actaaaataa agcacgaaga
     2881 aatcctgcaa aacttccaga agatgctggt ggacacggag gataaactga aggctgccca
     2941 ggaggccaac agagacctga tgcaggacat ggaggagctg aaatcccagg ccgacaaagc
     3001 caaagctgct cagactgcag aagacgccat gcagatcatg gaacagatga ccaaagagaa
     3061 aacagaaaca ctggcctcct tggaggacac caagcaaacg aatgcaaaac tacagagcga
     3121 attggacaca cttaaggaaa acaacttgaa aactgtggaa gagctgaaca agtcaaaaga
     3181 acttctgaac gaagagaacc aaaaaatgga agaattcaag aaggaaatag aaaccctaaa
     3241 gcaggcagca gctcagaagt cccagcagct ttcagcactg caggaagaga acgtcaaact
     3301 tgccgaggag ctggggagga cgcgggacga agtcacaagt catcaaaagc tggaagaaga
     3361 acgatctgta ctcaataatc agttgttaga aatgaaaaag agagaatccg agtacagaaa
     3421 agacgccgat gaagagaaag cctccttgca gaaatccatc agcctcacca gtgccttact
     3481 cacggagaag gacgcagagc tggagaagct gaggaatgag gtcacagtgc tcagggggga
     3541 aaacgcctct gccaagtccc tgcactcagt cgtgcagacc ctggagtcgg ataaggtgaa
     3601 gcttgagctc aaggtcaaaa acctggaact tcaactcaag gaaaacaaga ggcagctcag
     3661 cagctcctca ggtaacactg atgttcagac agaagaggat gagagagccc aggagagtca
     3721 gcaaatgatt gatttcctca actcggtaat agtggacctt caaagaaaga accaagacct
     3781 caagatgaag gtggagatga tgtctgaagc tgcgctgaac ggcaacgggg aggatccgaa
     3841 cagttacgac agtgatgacc aggagaagca gtccaagaag aaaccccgcc tcttctgtga
     3901 catttgtgac tgctttgatc tccacgacac agaggactgc cccacccagg cgcagatgtc
     3961 agaagaccct ccgcactcca ctcaccacgg cagccggagc gaggagcggc catactgtga
     4021 gatctgtgag atgtttggcc actgggccac caactgcaac gacgatgaga ccttctgagg
     4081 aggccgggca cacaggactg ggcttcccgg acgccggccc ctcagcagct ttccaccagc
     4141 gctgcccacg tgacttcgga agaactcctt attttttgac ccccctgtca acaaatctga
     4201 gaaagtattt tgatcttcaa cagatttccc tttcttttcc tctcgtaagt taaaataata
     4261 aacatttggt aggtgggctt gcacttccgt ccttgttttc tggattttta aagtttaaga
     4321 cattgtacga ggtgctacag taactttttg ttcccggaga aacaccctgg gacaagctgg
     4381 accctggcag tgtcttattt aagaaacttt aaattatgac gttaagcctc atatttgcac
     4441 taaaatgttt cctggcttca tctgtatatt tcggtggttg tttttgttac gctttgacac
     4501 tggaatgagt tgcaaaaaga aaaaaaagcg ccactttgtg aattcgtgcc ctcctttaaa
     4561 tacttttttt cctaagtgtc caagctgtcg gcactaccca ctgtcagtag tgcccttttc
     4621 caggcttgac aagacttggg cgagattata aatcatgaaa caggtaaaag ggaggggaaa
     4681 gccccaaact gctgtgggga cattttctaa tctatatgct acacccctgg tggtgttttc
     4741 tttattggtt ttacataatt tcaacctcta tatattatat gtatatatat tttttaaaaa
     4801 acaaaatcta tattttggga aaaaaaagtc tatacagtgt gtcttctttt cagatttttt
     4861 tacctttaca aaaaagaaaa cacctaaagg ctcaccagga tgtgaccggc tgggccagag
     4921 acaggctctg cggtgtcacg gccatcgtct ttgtttccgt gttgtttctt agccagctcg
     4981 tcggttgttc cccttcttta gcagataacc ccagcagcaa accaagccgc tcttacggcc
     5041 gccaaactaa ccggtccaca gccctccctt atgcatctgt gcggttcgtt tgttgtttgt
     5101 tgtttgtttt ttcttttact gtatttttaa tgaatgtatg atgagaaatt caacatggat
     5161 aattttgaat tttcttatca caaaaagata aaacaaagga cctcaatcaa ctgaagagtt
     5221 tatcagccag tctgagtctg tctgtcttca cttgaatgtc tttgaaaata tgtaagaagg
     5281 agtcagacgc gtgtccatgc cacgtgcagg ataagagctt ccacctttgt atataaataa
     5341 gccttcgcca tgtcccccgt aagattatcc actgtgcttg acgagtgaac attcaacaaa
     5401 cctgttacca gttggcattt tgggttaata aaactatagg aattatttca caaacgaaat
     5461 atgtaaagca gtattaaaat ctgagttctg tacctacttc aa
//
