LOCUS       XM_039089737            5889 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CAP-GLY domain containing linker
            protein 1 (Clip1), transcript variant X16, mRNA.
ACCESSION   XM_039089737
VERSION     XM_039089737.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5889
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5889
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 44 ESTs, 1 long SRA read, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
     CDS             242..4465
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X14"
                     /protein_id="XP_038945665.1"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPLEKTVPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQTAHARAASPLSTAAATMVSSSP
                     ATPSNIPQKPSQPVAKETSATPQISNLTKTASESISNLSEAGSVKKGERELKIGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMATTPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEQKSQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEK
                     SRIMELEKDLALRVQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEVTHTDHQ
                     NEVTSLKDHFGTREEMFQKEIKALHAATEKLSKENESLRSKLDHANKENSDVIALWKS
                     KLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDS
                     ERSAHAKEMESMKAKLMKIIKEKEDSLEAVKARLDTAEDQHLVEMEEMLSKLQEAEIK
                     VKELEVLQAKYSEQTQVVGHLTSQLSVVEEQLLDLDALRKANSEGKLEIETLRQQLEG
                     AEKQIKNLEMERNAESSKANSITKDLQGKELMLTSLQSNLNEVNQVKETLEKELQTLK
                     EKFASASEEAVSTQTSMQDTVNKLHQKEEQFNMLSSELEKLRENLTDMEAKFKEKDER
                     EDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENAS
                     LLQKSIGEVTLKAEQSQQEAAKKHEEEKKELENKLLELEKKMETSHYQCQDLKAKYEK
                     ASSETKIKHEEILQNFQKMLVDTEDKLKAAQEANRDLMQDMEELKSQADKAKLDTLKE
                     NNLKTVEELNKSKELLNEENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEEL
                     GRTRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEYRKDADEEKASLQKSISL
                     TSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKLELKVKNLELQLK
                     ENKRQLSSSSGNTDVQTEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAA
                     LNGNGEDPNSYDSDDQEKQSKKKPRLFCDICDCFDLHDTEDCPTQAQMSEDPPHSTHH
                     GSRSEERPYCEICEMFGHWATNCNDDETF"
ORIGIN      
        1 cggcggcgcg tcacgttctc ttccccgccc cgagccgaag agccggggag gcgggaggcg
       61 gcggccgcgg cggctgctgc tgctgctgct gctactggga ggcaggtgac ggcgaccgac
      121 ggcgtctcag gcgacttaac caagagacta agttctctat agaaacaccc acatttgtat
      181 ggatgattgg ggaaagatag tggcagcaga caagggaaaa gcatcctgac cttccgagaa
      241 aatgagtatg ctgaaaccca gcgggctgaa ggccccgacc aagatcctaa agcctgggag
      301 cacagccttg aagacccctg ctgctgctgc agctccattg gagaagacag tacccagtga
      361 aaaagcctca ggccctccat cctctgagac ccaagaggag tttgtggacg acttccgagt
      421 tggagaacgt gtttgggtga acgggaataa acctggattt atccagtttc ttggggaaac
      481 tcagtttgca ccaggccagt gggctggtat tgttttggat gaacccatag gaaagaacga
      541 cggctcagtg gcaggagtgc ggtatttcca gtgtgagcct ttaaagggca tcttcacccg
      601 accgtcaaag ctaacgagga aggtacaagc agaggatgaa gccaacggcc tgcagacagc
      661 tcacgcgaga gctgcttcac ctctgtccac tgctgcagcc accatggtgt cctcttctcc
      721 agccactccc tcaaatattc cccagaaacc gtcccagcca gtggcaaaag aaacttcagc
      781 gacacctcaa attagcaacc ttacgaaaac cgccagcgag tcaatctcca acctttcaga
      841 ggctggctct gtcaagaagg gagagcgaga gctcaagatc ggagacaggg tgctggtcgg
      901 tggcacgaag gctggcgtgg tccggtttct tggagagact gacttcgcca agggggagtg
      961 gtgtggtgtg gaattggacg aacctttggg gaagaacgac ggtgctgttg ctggaacaag
     1021 gtattttcaa tgtcaaccca agtacggatt gttcgctccc gtccacaaag tgacaaagat
     1081 tggcttccct tctaccaccc cagccaaagc caaagccgct gctgtgaggc gagtgatggc
     1141 caccacgccc gccagcctga agcgaagccc ttctgcctcc tccctcagct ccatgagctc
     1201 tgtggcctcc tctgtgagca gcaagcccag ccggacagga ctattgactg aaacctcttc
     1261 ccgctacgcc cgcaagatct cgggcaccac tgccctccag gaggcgctga aggagaagca
     1321 gcagcacatt gagcagctgc tggctgagcg ggacctggag cgggccgagg tggccaaggc
     1381 taccagccac gtgggggaaa tagagcagga gctagccctg gcccgagatg ggcatgacca
     1441 gcatgtcctg gaactggagg ccaagatgga ccagctgcgt accatggtag aagctgctga
     1501 cagggagaaa gtggagctcc tcaaccagct ggaagaggag aaaaggaagg ttgaggacct
     1561 tcagttccga gttgaagaag aatcaattac caaaggtgat cttgagcaaa agagccagat
     1621 ctctgaagac cccgagaata cgcagaccaa actggagcat gcccgcatta aggagcttga
     1681 acagagcctg ctctttgaaa agaccaaagc tgacaaactc cagagggagt tagaagacac
     1741 tagggtggct acagtatcag aaaagtcccg aataatggaa ctagaaaagg acctagcgtt
     1801 gagagtacag gaagtagctg agctccgaag aaggctagag tccagtaaac ctcccggaga
     1861 tgtggatatg tctctttctc ttttgcaaga aatcagtgct ttgcaagaaa agctagaagt
     1921 cacacatact gaccaccaga acgaggtgac gtctctgaag gaccactttg gaactcggga
     1981 agagatgttt cagaaggaga tcaaggctct gcacgctgcc actgaaaagc tctccaaaga
     2041 gaacgagtcc ttgaggagca agcttgacca tgccaacaag gagaactcag acgtcatcgc
     2101 tctgtggaag tccaaactgg agaccgccat cgcgtcccac cagcaggcaa tggaggagct
     2161 gaaggtgtcc tttagcaaag ggattggaac tgactcggct gagtttgctg agttaaagac
     2221 acagatagag agactcagac tagattacca gcacgaaata gaaagtttac agagtaagca
     2281 ggactccgaa cggtctgccc atgctaaaga gatggagtcc atgaaggcca agctgatgaa
     2341 gatcatcaaa gagaaggagg acagcctgga ggccgtcaaa gcacggctgg acacggcgga
     2401 agaccagcac ctggtggaga tggaggagat gctcagcaag ctgcaggagg cagagattaa
     2461 ggtaaaggaa ctagaggttc tgcaggccaa gtacagtgaa caaacccagg tcgttggtca
     2521 tctcacatca caactcagtg ttgtcgaaga acagctcttg gatctggatg cccttcggaa
     2581 ggccaactcc gaaggtaaac tggagatcga gacacttagg cagcagcttg agggagccga
     2641 aaagcagatt aaaaacttag agatggagag gaacgctgaa agtagcaagg ctaatagcat
     2701 taccaaagac ctccagggaa aagaactaat gctcactagt ctgcagagca atttgaatga
     2761 agtcaatcaa gtgaaggaga ctttggaaaa agaacttcag actttgaaag aaaagtttgc
     2821 cagcgcttca gaggaggccg tctctactca gacaagtatg caagatactg ttaataaact
     2881 gcaccaaaag gaggaacagt ttaatatgtt gtcttctgaa ctggagaagc tgagagaaaa
     2941 tttaacagac atggaggcaa aatttaaaga gaaggatgaa cgggaagatc agctggtaaa
     3001 ggcaaaggaa aagttagaaa atgacattgc agaaataatg aagatgtcag gggacaactc
     3061 ttctcagctg acaaagatga atgacgaatt acgtctgaag gaaaggtctg tggaagaact
     3121 acaactcaaa cttacaaagg ctaatgaaaa tgcaagtctt ctgcagaaaa gtatcgggga
     3181 agtaactctt aaagctgaac agagtcaaca ggaagcagcc aaaaaacatg aagaggaaaa
     3241 gaaagaactg gagaacaaat tgttggaact ggaaaagaag atggaaacta gccactacca
     3301 gtgtcaggac ctgaaagcca agtatgaaaa agccagttct gagactaaaa taaagcacga
     3361 agaaatcctg caaaacttcc agaagatgct ggtggacacg gaggataaac tgaaggctgc
     3421 ccaggaggcc aacagagacc tgatgcagga catggaggag ctgaaatccc aggccgacaa
     3481 agccaaattg gacacactta aggaaaacaa cttgaaaact gtggaagagc tgaacaagtc
     3541 aaaagaactt ctgaacgaag agaaccaaaa aatggaagaa ttcaagaagg aaatagaaac
     3601 cctaaagcag gcagcagctc agaagtccca gcagctttca gcactgcagg aagagaacgt
     3661 caaacttgcc gaggagctgg ggaggacgcg ggacgaagtc acaagtcatc aaaagctgga
     3721 agaagaacga tctgtactca ataatcagtt gttagaaatg aaaaagagct tacccagtaa
     3781 caccttaaga gaatccgagt acagaaaaga cgccgatgaa gagaaagcct ccttgcagaa
     3841 atccatcagc ctcaccagtg ccttactcac ggagaaggac gcagagctgg agaagctgag
     3901 gaatgaggtc acagtgctca ggggggaaaa cgcctctgcc aagtccctgc actcagtcgt
     3961 gcagaccctg gagtcggata aggtgaagct tgagctcaag gtcaaaaacc tggaacttca
     4021 actcaaggaa aacaagaggc agctcagcag ctcctcaggt aacactgatg ttcagacaga
     4081 agaggatgag agagcccagg agagtcagca aatgattgat ttcctcaact cggtaatagt
     4141 ggaccttcaa agaaagaacc aagacctcaa gatgaaggtg gagatgatgt ctgaagctgc
     4201 gctgaacggc aacggggagg atccgaacag ttacgacagt gatgaccagg agaagcagtc
     4261 caagaagaaa ccccgcctct tctgtgacat ttgtgactgc tttgatctcc acgacacaga
     4321 ggactgcccc acccaggcgc agatgtcaga agaccctccg cactccactc accacggcag
     4381 ccggagcgag gagcggccat actgtgagat ctgtgagatg tttggccact gggccaccaa
     4441 ctgcaacgac gatgagacct tctgaggagg ccgggcacac aggactgggc ttcccggacg
     4501 ccggcccctc agcagctttc caccagcgct gcccacgtga cttcggaaga actccttatt
     4561 ttttgacccc cctgtcaaca aatctgagaa agtattttga tcttcaacag atttcccttt
     4621 cttttcctct cgtaagttaa aataataaac atttggtagg tgggcttgca cttccgtcct
     4681 tgttttctgg atttttaaag tttaagacat tgtacgaggt gctacagtaa ctttttgttc
     4741 ccggagaaac accctgggac aagctggacc ctggcagtgt cttatttaag aaactttaaa
     4801 ttatgacgtt aagcctcata tttgcactaa aatgtttcct ggcttcatct gtatatttcg
     4861 gtggttgttt ttgttacgct ttgacactgg aatgagttgc aaaaagaaaa aaaagcgcca
     4921 ctttgtgaat tcgtgccctc ctttaaatac tttttttcct aagtgtccaa gctgtcggca
     4981 ctacccactg tcagtagtgc ccttttccag gcttgacaag acttgggcga gattataaat
     5041 catgaaacag gtaaaaggga ggggaaagcc ccaaactgct gtggggacat tttctaatct
     5101 atatgctaca cccctggtgg tgttttcttt attggtttta cataatttca acctctatat
     5161 attatatgta tatatatttt ttaaaaaaca aaatctatat tttgggaaaa aaaagtctat
     5221 acagtgtgtc ttcttttcag atttttttac ctttacaaaa aagaaaacac ctaaaggctc
     5281 accaggatgt gaccggctgg gccagagaca ggctctgcgg tgtcacggcc atcgtctttg
     5341 tttccgtgtt gtttcttagc cagctcgtcg gttgttcccc ttctttagca gataacccca
     5401 gcagcaaacc aagccgctct tacggccgcc aaactaaccg gtccacagcc ctcccttatg
     5461 catctgtgcg gttcgtttgt tgtttgttgt ttgttttttc ttttactgta tttttaatga
     5521 atgtatgatg agaaattcaa catggataat tttgaatttt cttatcacaa aaagataaaa
     5581 caaaggacct caatcaactg aagagtttat cagccagtct gagtctgtct gtcttcactt
     5641 gaatgtcttt gaaaatatgt aagaaggagt cagacgcgtg tccatgccac gtgcaggata
     5701 agagcttcca cctttgtata taaataagcc ttcgccatgt cccccgtaag attatccact
     5761 gtgcttgacg agtgaacatt caacaaacct gttaccagtt ggcattttgg gttaataaaa
     5821 ctataggaat tatttcacaa acgaaatatg taaagcagta ttaaaatctg agttctgtac
     5881 ctacttcaa
//
