LOCUS       XM_039089736            6006 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CAP-GLY domain containing linker
            protein 1 (Clip1), transcript variant X12, mRNA.
ACCESSION   XM_039089736
VERSION     XM_039089736.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6006
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6006
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 49 ESTs, 1 long SRA read, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 17 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
     CDS             242..4582
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X10"
                     /protein_id="XP_038945664.1"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPLEKTVPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQTAHARAASPLSTAAATMVSSSP
                     ATPSNIPQKPSQPVAKETSATPQISNLTKTASESISNLSEAGSVKKGERELKIGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMATTPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEQKSQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEK
                     SRIMELEKDLALRVQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEVTHTDHQ
                     NEVTSLKDHFGTREEMFQKEIKALHAATEKLSKENESLRSKLDHANKENSDVIALWKS
                     KLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDS
                     ERSAHAKEMESMKAKLMKIIKEKEDSLEAVKARLDTAEDQHLVEMEEMLSKLQEAEIK
                     VKELEVLQAKYSEQTQVVGHLTSQLSVVEEQLLDLDALRKANSEGKLEIETLRQQLEG
                     AEKQIKNLEMERNAESSKANSITKDLQGKELMLTSLQSNLNEVNQVKETLEKELQTLK
                     EKFASASEEAVSTQTSMQDTVNKLHQKEEQFNMLSSELEKLRENLTDMEAKFKEKDER
                     EDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENAS
                     LLQKSIGEVTLKAEQSQQEAAKKHEEEKKELENKLLELEKKMETSHYQCQDLKAKYEK
                     ASSETKIKHEEILQNFQKMLVDTEDKLKAAQEANRDLMQDMEELKSQADKAKAAQTAE
                     DAMQIMEQMTKEKTETLASLEDTKQTNAKLQSELDTLKENNLKTVEELNKSKELLNEE
                     NQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSV
                     LNNQLLEMKKSLPSNTLRESEYRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEV
                     TVLRGENASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDVQTEE
                     DERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDPNSYDSDDQEKQ
                     SKKKPRLFCDICDCFDLHDTEDCPTQAQMSEDPPHSTHHGSRSEERPYCEICEMFGHW
                     ATNCNDDETF"
ORIGIN      
        1 cggcggcgcg tcacgttctc ttccccgccc cgagccgaag agccggggag gcgggaggcg
       61 gcggccgcgg cggctgctgc tgctgctgct gctactggga ggcaggtgac ggcgaccgac
      121 ggcgtctcag gcgacttaac caagagacta agttctctat agaaacaccc acatttgtat
      181 ggatgattgg ggaaagatag tggcagcaga caagggaaaa gcatcctgac cttccgagaa
      241 aatgagtatg ctgaaaccca gcgggctgaa ggccccgacc aagatcctaa agcctgggag
      301 cacagccttg aagacccctg ctgctgctgc agctccattg gagaagacag tacccagtga
      361 aaaagcctca ggccctccat cctctgagac ccaagaggag tttgtggacg acttccgagt
      421 tggagaacgt gtttgggtga acgggaataa acctggattt atccagtttc ttggggaaac
      481 tcagtttgca ccaggccagt gggctggtat tgttttggat gaacccatag gaaagaacga
      541 cggctcagtg gcaggagtgc ggtatttcca gtgtgagcct ttaaagggca tcttcacccg
      601 accgtcaaag ctaacgagga aggtacaagc agaggatgaa gccaacggcc tgcagacagc
      661 tcacgcgaga gctgcttcac ctctgtccac tgctgcagcc accatggtgt cctcttctcc
      721 agccactccc tcaaatattc cccagaaacc gtcccagcca gtggcaaaag aaacttcagc
      781 gacacctcaa attagcaacc ttacgaaaac cgccagcgag tcaatctcca acctttcaga
      841 ggctggctct gtcaagaagg gagagcgaga gctcaagatc ggagacaggg tgctggtcgg
      901 tggcacgaag gctggcgtgg tccggtttct tggagagact gacttcgcca agggggagtg
      961 gtgtggtgtg gaattggacg aacctttggg gaagaacgac ggtgctgttg ctggaacaag
     1021 gtattttcaa tgtcaaccca agtacggatt gttcgctccc gtccacaaag tgacaaagat
     1081 tggcttccct tctaccaccc cagccaaagc caaagccgct gctgtgaggc gagtgatggc
     1141 caccacgccc gccagcctga agcgaagccc ttctgcctcc tccctcagct ccatgagctc
     1201 tgtggcctcc tctgtgagca gcaagcccag ccggacagga ctattgactg aaacctcttc
     1261 ccgctacgcc cgcaagatct cgggcaccac tgccctccag gaggcgctga aggagaagca
     1321 gcagcacatt gagcagctgc tggctgagcg ggacctggag cgggccgagg tggccaaggc
     1381 taccagccac gtgggggaaa tagagcagga gctagccctg gcccgagatg ggcatgacca
     1441 gcatgtcctg gaactggagg ccaagatgga ccagctgcgt accatggtag aagctgctga
     1501 cagggagaaa gtggagctcc tcaaccagct ggaagaggag aaaaggaagg ttgaggacct
     1561 tcagttccga gttgaagaag aatcaattac caaaggtgat cttgagcaaa agagccagat
     1621 ctctgaagac cccgagaata cgcagaccaa actggagcat gcccgcatta aggagcttga
     1681 acagagcctg ctctttgaaa agaccaaagc tgacaaactc cagagggagt tagaagacac
     1741 tagggtggct acagtatcag aaaagtcccg aataatggaa ctagaaaagg acctagcgtt
     1801 gagagtacag gaagtagctg agctccgaag aaggctagag tccagtaaac ctcccggaga
     1861 tgtggatatg tctctttctc ttttgcaaga aatcagtgct ttgcaagaaa agctagaagt
     1921 cacacatact gaccaccaga acgaggtgac gtctctgaag gaccactttg gaactcggga
     1981 agagatgttt cagaaggaga tcaaggctct gcacgctgcc actgaaaagc tctccaaaga
     2041 gaacgagtcc ttgaggagca agcttgacca tgccaacaag gagaactcag acgtcatcgc
     2101 tctgtggaag tccaaactgg agaccgccat cgcgtcccac cagcaggcaa tggaggagct
     2161 gaaggtgtcc tttagcaaag ggattggaac tgactcggct gagtttgctg agttaaagac
     2221 acagatagag agactcagac tagattacca gcacgaaata gaaagtttac agagtaagca
     2281 ggactccgaa cggtctgccc atgctaaaga gatggagtcc atgaaggcca agctgatgaa
     2341 gatcatcaaa gagaaggagg acagcctgga ggccgtcaaa gcacggctgg acacggcgga
     2401 agaccagcac ctggtggaga tggaggagat gctcagcaag ctgcaggagg cagagattaa
     2461 ggtaaaggaa ctagaggttc tgcaggccaa gtacagtgaa caaacccagg tcgttggtca
     2521 tctcacatca caactcagtg ttgtcgaaga acagctcttg gatctggatg cccttcggaa
     2581 ggccaactcc gaaggtaaac tggagatcga gacacttagg cagcagcttg agggagccga
     2641 aaagcagatt aaaaacttag agatggagag gaacgctgaa agtagcaagg ctaatagcat
     2701 taccaaagac ctccagggaa aagaactaat gctcactagt ctgcagagca atttgaatga
     2761 agtcaatcaa gtgaaggaga ctttggaaaa agaacttcag actttgaaag aaaagtttgc
     2821 cagcgcttca gaggaggccg tctctactca gacaagtatg caagatactg ttaataaact
     2881 gcaccaaaag gaggaacagt ttaatatgtt gtcttctgaa ctggagaagc tgagagaaaa
     2941 tttaacagac atggaggcaa aatttaaaga gaaggatgaa cgggaagatc agctggtaaa
     3001 ggcaaaggaa aagttagaaa atgacattgc agaaataatg aagatgtcag gggacaactc
     3061 ttctcagctg acaaagatga atgacgaatt acgtctgaag gaaaggtctg tggaagaact
     3121 acaactcaaa cttacaaagg ctaatgaaaa tgcaagtctt ctgcagaaaa gtatcgggga
     3181 agtaactctt aaagctgaac agagtcaaca ggaagcagcc aaaaaacatg aagaggaaaa
     3241 gaaagaactg gagaacaaat tgttggaact ggaaaagaag atggaaacta gccactacca
     3301 gtgtcaggac ctgaaagcca agtatgaaaa agccagttct gagactaaaa taaagcacga
     3361 agaaatcctg caaaacttcc agaagatgct ggtggacacg gaggataaac tgaaggctgc
     3421 ccaggaggcc aacagagacc tgatgcagga catggaggag ctgaaatccc aggccgacaa
     3481 agccaaagct gctcagactg cagaagacgc catgcagatc atggaacaga tgaccaaaga
     3541 gaaaacagaa acactggcct ccttggagga caccaagcaa acgaatgcaa aactacagag
     3601 cgaattggac acacttaagg aaaacaactt gaaaactgtg gaagagctga acaagtcaaa
     3661 agaacttctg aacgaagaga accaaaaaat ggaagaattc aagaaggaaa tagaaaccct
     3721 aaagcaggca gcagctcaga agtcccagca gctttcagca ctgcaggaag agaacgtcaa
     3781 acttgccgag gagctgggga ggacgcggga cgaagtcaca agtcatcaaa agctggaaga
     3841 agaacgatct gtactcaata atcagttgtt agaaatgaaa aagagcttac ccagtaacac
     3901 cttaagagaa tccgagtaca gaaaagacgc cgatgaagag aaagcctcct tgcagaaatc
     3961 catcagcctc accagtgcct tactcacgga gaaggacgca gagctggaga agctgaggaa
     4021 tgaggtcaca gtgctcaggg gggaaaacgc ctctgccaag tccctgcact cagtcgtgca
     4081 gaccctggag tcggataagg tgaagcttga gctcaaggtc aaaaacctgg aacttcaact
     4141 caaggaaaac aagaggcagc tcagcagctc ctcaggtaac actgatgttc agacagaaga
     4201 ggatgagaga gcccaggaga gtcagcaaat gattgatttc ctcaactcgg taatagtgga
     4261 ccttcaaaga aagaaccaag acctcaagat gaaggtggag atgatgtctg aagctgcgct
     4321 gaacggcaac ggggaggatc cgaacagtta cgacagtgat gaccaggaga agcagtccaa
     4381 gaagaaaccc cgcctcttct gtgacatttg tgactgcttt gatctccacg acacagagga
     4441 ctgccccacc caggcgcaga tgtcagaaga ccctccgcac tccactcacc acggcagccg
     4501 gagcgaggag cggccatact gtgagatctg tgagatgttt ggccactggg ccaccaactg
     4561 caacgacgat gagaccttct gaggaggccg ggcacacagg actgggcttc ccggacgccg
     4621 gcccctcagc agctttccac cagcgctgcc cacgtgactt cggaagaact ccttattttt
     4681 tgacccccct gtcaacaaat ctgagaaagt attttgatct tcaacagatt tccctttctt
     4741 ttcctctcgt aagttaaaat aataaacatt tggtaggtgg gcttgcactt ccgtccttgt
     4801 tttctggatt tttaaagttt aagacattgt acgaggtgct acagtaactt tttgttcccg
     4861 gagaaacacc ctgggacaag ctggaccctg gcagtgtctt atttaagaaa ctttaaatta
     4921 tgacgttaag cctcatattt gcactaaaat gtttcctggc ttcatctgta tatttcggtg
     4981 gttgtttttg ttacgctttg acactggaat gagttgcaaa aagaaaaaaa agcgccactt
     5041 tgtgaattcg tgccctcctt taaatacttt ttttcctaag tgtccaagct gtcggcacta
     5101 cccactgtca gtagtgccct tttccaggct tgacaagact tgggcgagat tataaatcat
     5161 gaaacaggta aaagggaggg gaaagcccca aactgctgtg gggacatttt ctaatctata
     5221 tgctacaccc ctggtggtgt tttctttatt ggttttacat aatttcaacc tctatatatt
     5281 atatgtatat atatttttta aaaaacaaaa tctatatttt gggaaaaaaa agtctataca
     5341 gtgtgtcttc ttttcagatt tttttacctt tacaaaaaag aaaacaccta aaggctcacc
     5401 aggatgtgac cggctgggcc agagacaggc tctgcggtgt cacggccatc gtctttgttt
     5461 ccgtgttgtt tcttagccag ctcgtcggtt gttccccttc tttagcagat aaccccagca
     5521 gcaaaccaag ccgctcttac ggccgccaaa ctaaccggtc cacagccctc ccttatgcat
     5581 ctgtgcggtt cgtttgttgt ttgttgtttg ttttttcttt tactgtattt ttaatgaatg
     5641 tatgatgaga aattcaacat ggataatttt gaattttctt atcacaaaaa gataaaacaa
     5701 aggacctcaa tcaactgaag agtttatcag ccagtctgag tctgtctgtc ttcacttgaa
     5761 tgtctttgaa aatatgtaag aaggagtcag acgcgtgtcc atgccacgtg caggataaga
     5821 gcttccacct ttgtatataa ataagccttc gccatgtccc ccgtaagatt atccactgtg
     5881 cttgacgagt gaacattcaa caaacctgtt accagttggc attttgggtt aataaaacta
     5941 taggaattat ttcacaaacg aaatatgtaa agcagtatta aaatctgagt tctgtaccta
     6001 cttcaa
//
