LOCUS       XM_039089735            8046 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CAP-GLY domain containing linker
            protein 1 (Clip1), transcript variant X11, mRNA.
ACCESSION   XM_039089735
VERSION     XM_039089735.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8046
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8046
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 40 ESTs, 1 long SRA read, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
     CDS             242..6622
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X9"
                     /protein_id="XP_038945663.1"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPLEKTVPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQTAHARAASPLSTAAATMVSSSP
                     ATPSNIPQKPSQPVAKETSATPQISNLTKTASESISNLSEAGSVKKGERELKIGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMATTPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEQKSQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEK
                     SRIMELEKDLALRVQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEVTHTDHQ
                     NEVTSLKDHFGTREEMFQKEIKALHAATEKLSKENESLRSKLDHANKENSDVIALWKS
                     KLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDS
                     ERSAHAKEMESMKAKLMKIIKEKEDSLEAVKARLDTAEDQHLVEMEEMLSKLQEAEIK
                     ANSITKDLQGKELMLTSLQSNLNEVNQVKETLEKELQTLKEKFASASEEAVSTQTSMQ
                     DTVNKLHQKEEQFNMLSSELEKLRENLTDMEAKFKEKDEREDQLVKAKEKLENDIAEI
                     MKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASLLQKSIGEVTLKAEQSQQ
                     EAAKKHEEEKKELENKLLELEKKMETSHYQCQDLKAKYEKASSETKIKHEEILQNFQK
                     MLVDTEDKLKAAQEANRDLMQDMEELKSQADKAKSLTYLLTSAKKEIEVMSEELRGLK
                     SEKQLFAQEASALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNENLHLEKERISEE
                     KQVAEKRYQQEHRDKESLVVEREKLLKEINVTQEELLKMHMEKDSLEASKVSMQVLIE
                     ELRFCKDKLMAMSEKARAEKEQLEGQVKKLTAENMVLVKDKDDVIQKLQSAYEELVKD
                     QKALVQEIEDLTTEKKSAAEKQMNLDNTCLTLKAERENLLQSNRDLQFEKDTLRQGQE
                     KLSASLEATLQVKQLLSTEAETLRTQLDCATKALRKAELDMRQLQTSNTSLTKLLEEI
                     KTCRAITDSECIQLLHEKESLAASERALLAEKEELLNENRVITEKLNKHSEEVTRLEV
                     SLNEKITYLTSEKEMACQKVARLKKQQDSLLKEKSALEVQNGDLLADRESSIKAIGDL
                     KRKYEQEATNRRLAVQEKVKLLGNIDALKKELQQRKKENQELASSKCDLSLMLKEAQT
                     AKKNLEKEHTSMMQAKEDLNAELKTCCCEKNILLRDGLNLQEECQKLNEEIREIQQTL
                     MLEKEARAKESESSLYESNKLHGRIVLLEEEIQGLRTCSEQLQTENFTLTQEKTNSEQ
                     KVVEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLTKILDDLRLNH
                     EVAVTERAEVLQDNKNLLAEKREMMLRNEEVLKEKEKLEESYFVLQKEISQLAQTNSH
                     ISADLLEAQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDAMQIMEQMTKEKTET
                     LASLEDTKQTNAKLQSELDTLKENNLKTVEELNKSKELLNEENQKMEEFKKEIETLKQ
                     AAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNT
                     LRESEYRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENASAKSLHSV
                     VQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDVQTEEDERAQESQQMIDFLNS
                     VIVDLQRKNQDLKMKVEMMSEAALNGNGEDPNSYDSDDQEKQSKKKPRLFCDICDCFD
                     LHDTEDCPTQAQMSEDPPHSTHHGSRSEERPYCEICEMFGHWATNCNDDETF"
ORIGIN      
        1 cggcggcgcg tcacgttctc ttccccgccc cgagccgaag agccggggag gcgggaggcg
       61 gcggccgcgg cggctgctgc tgctgctgct gctactggga ggcaggtgac ggcgaccgac
      121 ggcgtctcag gcgacttaac caagagacta agttctctat agaaacaccc acatttgtat
      181 ggatgattgg ggaaagatag tggcagcaga caagggaaaa gcatcctgac cttccgagaa
      241 aatgagtatg ctgaaaccca gcgggctgaa ggccccgacc aagatcctaa agcctgggag
      301 cacagccttg aagacccctg ctgctgctgc agctccattg gagaagacag tacccagtga
      361 aaaagcctca ggccctccat cctctgagac ccaagaggag tttgtggacg acttccgagt
      421 tggagaacgt gtttgggtga acgggaataa acctggattt atccagtttc ttggggaaac
      481 tcagtttgca ccaggccagt gggctggtat tgttttggat gaacccatag gaaagaacga
      541 cggctcagtg gcaggagtgc ggtatttcca gtgtgagcct ttaaagggca tcttcacccg
      601 accgtcaaag ctaacgagga aggtacaagc agaggatgaa gccaacggcc tgcagacagc
      661 tcacgcgaga gctgcttcac ctctgtccac tgctgcagcc accatggtgt cctcttctcc
      721 agccactccc tcaaatattc cccagaaacc gtcccagcca gtggcaaaag aaacttcagc
      781 gacacctcaa attagcaacc ttacgaaaac cgccagcgag tcaatctcca acctttcaga
      841 ggctggctct gtcaagaagg gagagcgaga gctcaagatc ggagacaggg tgctggtcgg
      901 tggcacgaag gctggcgtgg tccggtttct tggagagact gacttcgcca agggggagtg
      961 gtgtggtgtg gaattggacg aacctttggg gaagaacgac ggtgctgttg ctggaacaag
     1021 gtattttcaa tgtcaaccca agtacggatt gttcgctccc gtccacaaag tgacaaagat
     1081 tggcttccct tctaccaccc cagccaaagc caaagccgct gctgtgaggc gagtgatggc
     1141 caccacgccc gccagcctga agcgaagccc ttctgcctcc tccctcagct ccatgagctc
     1201 tgtggcctcc tctgtgagca gcaagcccag ccggacagga ctattgactg aaacctcttc
     1261 ccgctacgcc cgcaagatct cgggcaccac tgccctccag gaggcgctga aggagaagca
     1321 gcagcacatt gagcagctgc tggctgagcg ggacctggag cgggccgagg tggccaaggc
     1381 taccagccac gtgggggaaa tagagcagga gctagccctg gcccgagatg ggcatgacca
     1441 gcatgtcctg gaactggagg ccaagatgga ccagctgcgt accatggtag aagctgctga
     1501 cagggagaaa gtggagctcc tcaaccagct ggaagaggag aaaaggaagg ttgaggacct
     1561 tcagttccga gttgaagaag aatcaattac caaaggtgat cttgagcaaa agagccagat
     1621 ctctgaagac cccgagaata cgcagaccaa actggagcat gcccgcatta aggagcttga
     1681 acagagcctg ctctttgaaa agaccaaagc tgacaaactc cagagggagt tagaagacac
     1741 tagggtggct acagtatcag aaaagtcccg aataatggaa ctagaaaagg acctagcgtt
     1801 gagagtacag gaagtagctg agctccgaag aaggctagag tccagtaaac ctcccggaga
     1861 tgtggatatg tctctttctc ttttgcaaga aatcagtgct ttgcaagaaa agctagaagt
     1921 cacacatact gaccaccaga acgaggtgac gtctctgaag gaccactttg gaactcggga
     1981 agagatgttt cagaaggaga tcaaggctct gcacgctgcc actgaaaagc tctccaaaga
     2041 gaacgagtcc ttgaggagca agcttgacca tgccaacaag gagaactcag acgtcatcgc
     2101 tctgtggaag tccaaactgg agaccgccat cgcgtcccac cagcaggcaa tggaggagct
     2161 gaaggtgtcc tttagcaaag ggattggaac tgactcggct gagtttgctg agttaaagac
     2221 acagatagag agactcagac tagattacca gcacgaaata gaaagtttac agagtaagca
     2281 ggactccgaa cggtctgccc atgctaaaga gatggagtcc atgaaggcca agctgatgaa
     2341 gatcatcaaa gagaaggagg acagcctgga ggccgtcaaa gcacggctgg acacggcgga
     2401 agaccagcac ctggtggaga tggaggagat gctcagcaag ctgcaggagg cagagattaa
     2461 ggctaatagc attaccaaag acctccaggg aaaagaacta atgctcacta gtctgcagag
     2521 caatttgaat gaagtcaatc aagtgaagga gactttggaa aaagaacttc agactttgaa
     2581 agaaaagttt gccagcgctt cagaggaggc cgtctctact cagacaagta tgcaagatac
     2641 tgttaataaa ctgcaccaaa aggaggaaca gtttaatatg ttgtcttctg aactggagaa
     2701 gctgagagaa aatttaacag acatggaggc aaaatttaaa gagaaggatg aacgggaaga
     2761 tcagctggta aaggcaaagg aaaagttaga aaatgacatt gcagaaataa tgaagatgtc
     2821 aggggacaac tcttctcagc tgacaaagat gaatgacgaa ttacgtctga aggaaaggtc
     2881 tgtggaagaa ctacaactca aacttacaaa ggctaatgaa aatgcaagtc ttctgcagaa
     2941 aagtatcggg gaagtaactc ttaaagctga acagagtcaa caggaagcag ccaaaaaaca
     3001 tgaagaggaa aagaaagaac tggagaacaa attgttggaa ctggaaaaga agatggaaac
     3061 tagccactac cagtgtcagg acctgaaagc caagtatgaa aaagccagtt ctgagactaa
     3121 aataaagcac gaagaaatcc tgcaaaactt ccagaagatg ctggtggaca cggaggataa
     3181 actgaaggct gcccaggagg ccaacagaga cctgatgcag gacatggagg agctgaaatc
     3241 ccaggccgac aaagccaaat cgctaactta tttgttaacg tcagccaaaa aagagattga
     3301 agtaatgtca gaagagctga ggggtctgaa gtcagagaag cagctctttg cccaggaggc
     3361 aagcgcttta aagttagaga aaggttctct tttatcaaag cttatagaag tggagaccaa
     3421 gataaccttg cttcaggaag accaacagaa gctatggtca gtaaacgaaa acctccattt
     3481 agaaaaggag aggatctccg aggaaaagca ggttgccgag aagcgttatc agcaggagca
     3541 tcgggataag gagtctctgg tggttgagag agagaagctg ctgaaggaga tcaatgtgac
     3601 ccaggaagag ctcctgaaga tgcacatgga gaaagactcc ctggaggcct ccaaggtgag
     3661 catgcaggtg ctgatcgagg agctgcgctt ctgcaaggac aaactgatgg ccatgtcgga
     3721 gaaggcccgg gcagagaagg agcagctgga ggggcaggtc aagaagctca ctgcggagaa
     3781 catggtcttg gtcaaagaca aggatgacgt cattcagaaa cttcagagcg cttacgagga
     3841 gctcgtcaag gaccagaagg ccttggtcca agagatcgag gacctcacga ccgagaagaa
     3901 gtcagccgcc gagaagcaga tgaacctcga taacacctgc ctcaccctaa aggcagagcg
     3961 ggagaacctt ctccagagta accgagacct gcagtttgag aaggacacac tgcgccaggg
     4021 ccaggagaag ctgagcgcca gcctggaggc caccctgcag gtcaagcagc tgctcagcac
     4081 ggaggcagag acgctgcgca cgcagctgga ctgcgccacc aaggcgctga ggaaggcgga
     4141 gctggacatg agacagctgc agacctccaa caccagtctc acgaagctcc tggaagagat
     4201 taagacctgc cgggccatca cggactcgga gtgtatccag cttctccatg agaaggagag
     4261 cttggcggcc tccgagagag cgctcctggc ggagaaagag gaactgctaa atgaaaatag
     4321 ggtcatcact gagaaactca acaaacactc ggaagaggta acccgtctcg aggtgagcct
     4381 gaacgagaag atcacgtacc tgacttctga gaaggagatg gcttgtcaga aagtcgctag
     4441 gctcaaaaag cagcaggaca gcctcttgaa agaaaaatca gccctggagg tgcaaaatgg
     4501 agatctgctt gctgacaggg agagttccat caaggccata ggggacctga agaggaaata
     4561 tgagcaggag gccacaaaca ggcggctcgc ggtgcaggag aaggtgaagc tgctgggcaa
     4621 catcgacgcg ctgaagaaag agcttcagca gagaaagaag gagaaccagg agctggcgag
     4681 cagcaagtgc gacctctcct tgatgctcaa agaggctcag acggccaaga agaaccttga
     4741 aaaagagcac acgagcatga tgcaggccaa ggaggacctg aacgccgagc tgaagacgtg
     4801 ctgctgcgag aagaacatcc tgctgaggga tggcttgaac ctgcaggagg agtgtcagaa
     4861 actaaatgag gagattcggg aaatccaaca gacgttaatg ctggagaagg aggccagggc
     4921 caaggagagc gagagctctt tgtatgaaag caacaagctc cacgggagaa tagtgctctt
     4981 agaggaagag atacaggggc tgaggacatg tagtgagcag ctccagactg agaattttac
     5041 ccttacccaa gagaagacca actcagagca aaaagtggtg gagatcatta aggaaaagga
     5101 acttctgagc gcagagacgg ctcagctcgc ggccaacatc gagaccctca aaagtgactt
     5161 cgctgccctt tccaagtcca agttggaatt gcaagaacta cacagctgcc tcaccaagat
     5221 cctggatgac ctccggctga accatgaggt ggccgtgacc gagagggccg aggtgcttca
     5281 ggacaacaag aacctcctgg ctgagaaacg agagatgatg ctgagaaatg aggaggtgct
     5341 gaaggagaag gagaagctgg aagaaagcta cttcgtcctc cagaaggaga ttagccagct
     5401 ggcccaaacc aacagccaca tttcagccga cctcctagaa gcccaaagcg aaaaccggac
     5461 tttgaggaaa gacaagagca agctaaccct taaaattaga gagcttgaga ccctccattc
     5521 gttcacggct gctcagactg cagaagacgc catgcagatc atggaacaga tgaccaaaga
     5581 gaaaacagaa acactggcct ccttggagga caccaagcaa acgaatgcaa aactacagag
     5641 cgaattggac acacttaagg aaaacaactt gaaaactgtg gaagagctga acaagtcaaa
     5701 agaacttctg aacgaagaga accaaaaaat ggaagaattc aagaaggaaa tagaaaccct
     5761 aaagcaggca gcagctcaga agtcccagca gctttcagca ctgcaggaag agaacgtcaa
     5821 acttgccgag gagctgggga ggacgcggga cgaagtcaca agtcatcaaa agctggaaga
     5881 agaacgatct gtactcaata atcagttgtt agaaatgaaa aagagcttac ccagtaacac
     5941 cttaagagaa tccgagtaca gaaaagacgc cgatgaagag aaagcctcct tgcagaaatc
     6001 catcagcctc accagtgcct tactcacgga gaaggacgca gagctggaga agctgaggaa
     6061 tgaggtcaca gtgctcaggg gggaaaacgc ctctgccaag tccctgcact cagtcgtgca
     6121 gaccctggag tcggataagg tgaagcttga gctcaaggtc aaaaacctgg aacttcaact
     6181 caaggaaaac aagaggcagc tcagcagctc ctcaggtaac actgatgttc agacagaaga
     6241 ggatgagaga gcccaggaga gtcagcaaat gattgatttc ctcaactcgg taatagtgga
     6301 ccttcaaaga aagaaccaag acctcaagat gaaggtggag atgatgtctg aagctgcgct
     6361 gaacggcaac ggggaggatc cgaacagtta cgacagtgat gaccaggaga agcagtccaa
     6421 gaagaaaccc cgcctcttct gtgacatttg tgactgcttt gatctccacg acacagagga
     6481 ctgccccacc caggcgcaga tgtcagaaga ccctccgcac tccactcacc acggcagccg
     6541 gagcgaggag cggccatact gtgagatctg tgagatgttt ggccactggg ccaccaactg
     6601 caacgacgat gagaccttct gaggaggccg ggcacacagg actgggcttc ccggacgccg
     6661 gcccctcagc agctttccac cagcgctgcc cacgtgactt cggaagaact ccttattttt
     6721 tgacccccct gtcaacaaat ctgagaaagt attttgatct tcaacagatt tccctttctt
     6781 ttcctctcgt aagttaaaat aataaacatt tggtaggtgg gcttgcactt ccgtccttgt
     6841 tttctggatt tttaaagttt aagacattgt acgaggtgct acagtaactt tttgttcccg
     6901 gagaaacacc ctgggacaag ctggaccctg gcagtgtctt atttaagaaa ctttaaatta
     6961 tgacgttaag cctcatattt gcactaaaat gtttcctggc ttcatctgta tatttcggtg
     7021 gttgtttttg ttacgctttg acactggaat gagttgcaaa aagaaaaaaa agcgccactt
     7081 tgtgaattcg tgccctcctt taaatacttt ttttcctaag tgtccaagct gtcggcacta
     7141 cccactgtca gtagtgccct tttccaggct tgacaagact tgggcgagat tataaatcat
     7201 gaaacaggta aaagggaggg gaaagcccca aactgctgtg gggacatttt ctaatctata
     7261 tgctacaccc ctggtggtgt tttctttatt ggttttacat aatttcaacc tctatatatt
     7321 atatgtatat atatttttta aaaaacaaaa tctatatttt gggaaaaaaa agtctataca
     7381 gtgtgtcttc ttttcagatt tttttacctt tacaaaaaag aaaacaccta aaggctcacc
     7441 aggatgtgac cggctgggcc agagacaggc tctgcggtgt cacggccatc gtctttgttt
     7501 ccgtgttgtt tcttagccag ctcgtcggtt gttccccttc tttagcagat aaccccagca
     7561 gcaaaccaag ccgctcttac ggccgccaaa ctaaccggtc cacagccctc ccttatgcat
     7621 ctgtgcggtt cgtttgttgt ttgttgtttg ttttttcttt tactgtattt ttaatgaatg
     7681 tatgatgaga aattcaacat ggataatttt gaattttctt atcacaaaaa gataaaacaa
     7741 aggacctcaa tcaactgaag agtttatcag ccagtctgag tctgtctgtc ttcacttgaa
     7801 tgtctttgaa aatatgtaag aaggagtcag acgcgtgtcc atgccacgtg caggataaga
     7861 gcttccacct ttgtatataa ataagccttc gccatgtccc ccgtaagatt atccactgtg
     7921 cttgacgagt gaacattcaa caaacctgtt accagttggc attttgggtt aataaaacta
     7981 taggaattat ttcacaaacg aaatatgtaa agcagtatta aaatctgagt tctgtaccta
     8041 cttcaa
//
