LOCUS       XM_039089734            8076 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CAP-GLY domain containing linker
            protein 1 (Clip1), transcript variant X10, mRNA.
ACCESSION   XM_039089734
VERSION     XM_039089734.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8076
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8076
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 44 ESTs, 1 long SRA read, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
     CDS             242..6652
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X8"
                     /protein_id="XP_038945662.1"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPLEKTVPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQTAHARAASPLSTAAATMVSSSP
                     ATPSNIPQKPSQPVAKETSATPQISNLTKTASESISNLSEAGSVKKGERELKIGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMATTPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     HVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKS
                     QISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEK
                     DLALRVQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEVTHTDHQNEVTSLKD
                     HFGTREEMFQKEIKALHAATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIAS
                     HQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKE
                     MESMKAKLMKIIKEKEDSLEAVKARLDTAEDQHLVEMEEMLSKLQEAEIKVKELEVLQ
                     AKYSEQTQVVGHLTSQLSVVEEQLLDLDALRKANSEGKLEIETLRQQLEGAEKQIKNL
                     EMERNAESSKANSITKDLQGKELMLTSLQSNLNEVNQVKETLEKELQTLKEKFASASE
                     EAVSTQTSMQDTVNKLHQKEEQFNMLSSELEKLRENLTDMEAKFKEKDEREDQLVKAK
                     EKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASLLQKSIGE
                     VTLKAEQSQQEAAKKHEEEKKELENKLLELEKKMETSHYQCQDLKAKYEKASSETKIK
                     HEEILQNFQKMLVDTEDKLKAAQEANRDLMQDMEELKSQADKAKSLTYLLTSAKKEIE
                     VMSEELRGLKSEKQLFAQEASALKLEKGSLLSKLIEVETKITLLQEDQQKLWSVNENL
                     HLEKERISEEKQVAEKRYQQEHRDKESLVVEREKLLKEINVTQEELLKMHMEKDSLEA
                     SKVSMQVLIEELRFCKDKLMAMSEKARAEKEQLEGQVKKLTAENMVLVKDKDDVIQKL
                     QSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMNLDNTCLTLKAERENLLQSNRDLQF
                     EKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCATKALRKAELDMRQLQTSN
                     TSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERALLAEKEELLNENRVITEKLNK
                     HSEEVTRLEVSLNEKITYLTSEKEMACQKVARLKKQQDSLLKEKSALEVQNGDLLADR
                     ESSIKAIGDLKRKYEQEATNRRLAVQEKVKLLGNIDALKKELQQRKKENQELASSKCD
                     LSLMLKEAQTAKKNLEKEHTSMMQAKEDLNAELKTCCCEKNILLRDGLNLQEECQKLN
                     EEIREIQQTLMLEKEARAKESESSLYESNKLHGRIVLLEEEIQGLRTCSEQLQTENFT
                     LTQEKTNSEQKVVEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLELQELHSCLT
                     KILDDLRLNHEVAVTERAEVLQDNKNLLAEKREMMLRNEEVLKEKEKLEESYFVLQKE
                     ISQLAQTNSHISADLLEAQSENRTLRKDKSKLTLKIRELETLHSFTAAQTAEDAMQIM
                     EQMTKEKTETLASLEDTKQTNAKLQSELDTLKENNLKTVEELNKSKELLNEENQKMEE
                     FKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLL
                     EMKKSLPSNTLRESEYRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE
                     NASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDVQTEEDERAQE
                     SQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDPNSYDSDDQEKQSKKKPR
                     LFCDICDCFDLHDTEDCPTQAQMSEDPPHSTHHGSRSEERPYCEICEMFGHWATNCND
                     DETF"
ORIGIN      
        1 cggcggcgcg tcacgttctc ttccccgccc cgagccgaag agccggggag gcgggaggcg
       61 gcggccgcgg cggctgctgc tgctgctgct gctactggga ggcaggtgac ggcgaccgac
      121 ggcgtctcag gcgacttaac caagagacta agttctctat agaaacaccc acatttgtat
      181 ggatgattgg ggaaagatag tggcagcaga caagggaaaa gcatcctgac cttccgagaa
      241 aatgagtatg ctgaaaccca gcgggctgaa ggccccgacc aagatcctaa agcctgggag
      301 cacagccttg aagacccctg ctgctgctgc agctccattg gagaagacag tacccagtga
      361 aaaagcctca ggccctccat cctctgagac ccaagaggag tttgtggacg acttccgagt
      421 tggagaacgt gtttgggtga acgggaataa acctggattt atccagtttc ttggggaaac
      481 tcagtttgca ccaggccagt gggctggtat tgttttggat gaacccatag gaaagaacga
      541 cggctcagtg gcaggagtgc ggtatttcca gtgtgagcct ttaaagggca tcttcacccg
      601 accgtcaaag ctaacgagga aggtacaagc agaggatgaa gccaacggcc tgcagacagc
      661 tcacgcgaga gctgcttcac ctctgtccac tgctgcagcc accatggtgt cctcttctcc
      721 agccactccc tcaaatattc cccagaaacc gtcccagcca gtggcaaaag aaacttcagc
      781 gacacctcaa attagcaacc ttacgaaaac cgccagcgag tcaatctcca acctttcaga
      841 ggctggctct gtcaagaagg gagagcgaga gctcaagatc ggagacaggg tgctggtcgg
      901 tggcacgaag gctggcgtgg tccggtttct tggagagact gacttcgcca agggggagtg
      961 gtgtggtgtg gaattggacg aacctttggg gaagaacgac ggtgctgttg ctggaacaag
     1021 gtattttcaa tgtcaaccca agtacggatt gttcgctccc gtccacaaag tgacaaagat
     1081 tggcttccct tctaccaccc cagccaaagc caaagccgct gctgtgaggc gagtgatggc
     1141 caccacgccc gccagcctga agcgaagccc ttctgcctcc tccctcagct ccatgagctc
     1201 tgtggcctcc tctgtgagca gcaagcccag ccggacagga ctacatgtcc tggaactgga
     1261 ggccaagatg gaccagctgc gtaccatggt agaagctgct gacagggaga aagtggagct
     1321 cctcaaccag ctggaagagg agaaaaggaa ggttgaggac cttcagttcc gagttgaaga
     1381 agaatcaatt accaaaggtg atcttgagca aaagagccag atctctgaag accccgagaa
     1441 tacgcagacc aaactggagc atgcccgcat taaggagctt gaacagagcc tgctctttga
     1501 aaagaccaaa gctgacaaac tccagaggga gttagaagac actagggtgg ctacagtatc
     1561 agaaaagtcc cgaataatgg aactagaaaa ggacctagcg ttgagagtac aggaagtagc
     1621 tgagctccga agaaggctag agtccagtaa acctcccgga gatgtggata tgtctctttc
     1681 tcttttgcaa gaaatcagtg ctttgcaaga aaagctagaa gtcacacata ctgaccacca
     1741 gaacgaggtg acgtctctga aggaccactt tggaactcgg gaagagatgt ttcagaagga
     1801 gatcaaggct ctgcacgctg ccactgaaaa gctctccaaa gagaacgagt ccttgaggag
     1861 caagcttgac catgccaaca aggagaactc agacgtcatc gctctgtgga agtccaaact
     1921 ggagaccgcc atcgcgtccc accagcaggc aatggaggag ctgaaggtgt cctttagcaa
     1981 agggattgga actgactcgg ctgagtttgc tgagttaaag acacagatag agagactcag
     2041 actagattac cagcacgaaa tagaaagttt acagagtaag caggactccg aacggtctgc
     2101 ccatgctaaa gagatggagt ccatgaaggc caagctgatg aagatcatca aagagaagga
     2161 ggacagcctg gaggccgtca aagcacggct ggacacggcg gaagaccagc acctggtgga
     2221 gatggaggag atgctcagca agctgcagga ggcagagatt aaggtaaagg aactagaggt
     2281 tctgcaggcc aagtacagtg aacaaaccca ggtcgttggt catctcacat cacaactcag
     2341 tgttgtcgaa gaacagctct tggatctgga tgcccttcgg aaggccaact ccgaaggtaa
     2401 actggagatc gagacactta ggcagcagct tgagggagcc gaaaagcaga ttaaaaactt
     2461 agagatggag aggaacgctg aaagtagcaa ggctaatagc attaccaaag acctccaggg
     2521 aaaagaacta atgctcacta gtctgcagag caatttgaat gaagtcaatc aagtgaagga
     2581 gactttggaa aaagaacttc agactttgaa agaaaagttt gccagcgctt cagaggaggc
     2641 cgtctctact cagacaagta tgcaagatac tgttaataaa ctgcaccaaa aggaggaaca
     2701 gtttaatatg ttgtcttctg aactggagaa gctgagagaa aatttaacag acatggaggc
     2761 aaaatttaaa gagaaggatg aacgggaaga tcagctggta aaggcaaagg aaaagttaga
     2821 aaatgacatt gcagaaataa tgaagatgtc aggggacaac tcttctcagc tgacaaagat
     2881 gaatgacgaa ttacgtctga aggaaaggtc tgtggaagaa ctacaactca aacttacaaa
     2941 ggctaatgaa aatgcaagtc ttctgcagaa aagtatcggg gaagtaactc ttaaagctga
     3001 acagagtcaa caggaagcag ccaaaaaaca tgaagaggaa aagaaagaac tggagaacaa
     3061 attgttggaa ctggaaaaga agatggaaac tagccactac cagtgtcagg acctgaaagc
     3121 caagtatgaa aaagccagtt ctgagactaa aataaagcac gaagaaatcc tgcaaaactt
     3181 ccagaagatg ctggtggaca cggaggataa actgaaggct gcccaggagg ccaacagaga
     3241 cctgatgcag gacatggagg agctgaaatc ccaggccgac aaagccaaat cgctaactta
     3301 tttgttaacg tcagccaaaa aagagattga agtaatgtca gaagagctga ggggtctgaa
     3361 gtcagagaag cagctctttg cccaggaggc aagcgcttta aagttagaga aaggttctct
     3421 tttatcaaag cttatagaag tggagaccaa gataaccttg cttcaggaag accaacagaa
     3481 gctatggtca gtaaacgaaa acctccattt agaaaaggag aggatctccg aggaaaagca
     3541 ggttgccgag aagcgttatc agcaggagca tcgggataag gagtctctgg tggttgagag
     3601 agagaagctg ctgaaggaga tcaatgtgac ccaggaagag ctcctgaaga tgcacatgga
     3661 gaaagactcc ctggaggcct ccaaggtgag catgcaggtg ctgatcgagg agctgcgctt
     3721 ctgcaaggac aaactgatgg ccatgtcgga gaaggcccgg gcagagaagg agcagctgga
     3781 ggggcaggtc aagaagctca ctgcggagaa catggtcttg gtcaaagaca aggatgacgt
     3841 cattcagaaa cttcagagcg cttacgagga gctcgtcaag gaccagaagg ccttggtcca
     3901 agagatcgag gacctcacga ccgagaagaa gtcagccgcc gagaagcaga tgaacctcga
     3961 taacacctgc ctcaccctaa aggcagagcg ggagaacctt ctccagagta accgagacct
     4021 gcagtttgag aaggacacac tgcgccaggg ccaggagaag ctgagcgcca gcctggaggc
     4081 caccctgcag gtcaagcagc tgctcagcac ggaggcagag acgctgcgca cgcagctgga
     4141 ctgcgccacc aaggcgctga ggaaggcgga gctggacatg agacagctgc agacctccaa
     4201 caccagtctc acgaagctcc tggaagagat taagacctgc cgggccatca cggactcgga
     4261 gtgtatccag cttctccatg agaaggagag cttggcggcc tccgagagag cgctcctggc
     4321 ggagaaagag gaactgctaa atgaaaatag ggtcatcact gagaaactca acaaacactc
     4381 ggaagaggta acccgtctcg aggtgagcct gaacgagaag atcacgtacc tgacttctga
     4441 gaaggagatg gcttgtcaga aagtcgctag gctcaaaaag cagcaggaca gcctcttgaa
     4501 agaaaaatca gccctggagg tgcaaaatgg agatctgctt gctgacaggg agagttccat
     4561 caaggccata ggggacctga agaggaaata tgagcaggag gccacaaaca ggcggctcgc
     4621 ggtgcaggag aaggtgaagc tgctgggcaa catcgacgcg ctgaagaaag agcttcagca
     4681 gagaaagaag gagaaccagg agctggcgag cagcaagtgc gacctctcct tgatgctcaa
     4741 agaggctcag acggccaaga agaaccttga aaaagagcac acgagcatga tgcaggccaa
     4801 ggaggacctg aacgccgagc tgaagacgtg ctgctgcgag aagaacatcc tgctgaggga
     4861 tggcttgaac ctgcaggagg agtgtcagaa actaaatgag gagattcggg aaatccaaca
     4921 gacgttaatg ctggagaagg aggccagggc caaggagagc gagagctctt tgtatgaaag
     4981 caacaagctc cacgggagaa tagtgctctt agaggaagag atacaggggc tgaggacatg
     5041 tagtgagcag ctccagactg agaattttac ccttacccaa gagaagacca actcagagca
     5101 aaaagtggtg gagatcatta aggaaaagga acttctgagc gcagagacgg ctcagctcgc
     5161 ggccaacatc gagaccctca aaagtgactt cgctgccctt tccaagtcca agttggaatt
     5221 gcaagaacta cacagctgcc tcaccaagat cctggatgac ctccggctga accatgaggt
     5281 ggccgtgacc gagagggccg aggtgcttca ggacaacaag aacctcctgg ctgagaaacg
     5341 agagatgatg ctgagaaatg aggaggtgct gaaggagaag gagaagctgg aagaaagcta
     5401 cttcgtcctc cagaaggaga ttagccagct ggcccaaacc aacagccaca tttcagccga
     5461 cctcctagaa gcccaaagcg aaaaccggac tttgaggaaa gacaagagca agctaaccct
     5521 taaaattaga gagcttgaga ccctccattc gttcacggct gctcagactg cagaagacgc
     5581 catgcagatc atggaacaga tgaccaaaga gaaaacagaa acactggcct ccttggagga
     5641 caccaagcaa acgaatgcaa aactacagag cgaattggac acacttaagg aaaacaactt
     5701 gaaaactgtg gaagagctga acaagtcaaa agaacttctg aacgaagaga accaaaaaat
     5761 ggaagaattc aagaaggaaa tagaaaccct aaagcaggca gcagctcaga agtcccagca
     5821 gctttcagca ctgcaggaag agaacgtcaa acttgccgag gagctgggga ggacgcggga
     5881 cgaagtcaca agtcatcaaa agctggaaga agaacgatct gtactcaata atcagttgtt
     5941 agaaatgaaa aagagcttac ccagtaacac cttaagagaa tccgagtaca gaaaagacgc
     6001 cgatgaagag aaagcctcct tgcagaaatc catcagcctc accagtgcct tactcacgga
     6061 gaaggacgca gagctggaga agctgaggaa tgaggtcaca gtgctcaggg gggaaaacgc
     6121 ctctgccaag tccctgcact cagtcgtgca gaccctggag tcggataagg tgaagcttga
     6181 gctcaaggtc aaaaacctgg aacttcaact caaggaaaac aagaggcagc tcagcagctc
     6241 ctcaggtaac actgatgttc agacagaaga ggatgagaga gcccaggaga gtcagcaaat
     6301 gattgatttc ctcaactcgg taatagtgga ccttcaaaga aagaaccaag acctcaagat
     6361 gaaggtggag atgatgtctg aagctgcgct gaacggcaac ggggaggatc cgaacagtta
     6421 cgacagtgat gaccaggaga agcagtccaa gaagaaaccc cgcctcttct gtgacatttg
     6481 tgactgcttt gatctccacg acacagagga ctgccccacc caggcgcaga tgtcagaaga
     6541 ccctccgcac tccactcacc acggcagccg gagcgaggag cggccatact gtgagatctg
     6601 tgagatgttt ggccactggg ccaccaactg caacgacgat gagaccttct gaggaggccg
     6661 ggcacacagg actgggcttc ccggacgccg gcccctcagc agctttccac cagcgctgcc
     6721 cacgtgactt cggaagaact ccttattttt tgacccccct gtcaacaaat ctgagaaagt
     6781 attttgatct tcaacagatt tccctttctt ttcctctcgt aagttaaaat aataaacatt
     6841 tggtaggtgg gcttgcactt ccgtccttgt tttctggatt tttaaagttt aagacattgt
     6901 acgaggtgct acagtaactt tttgttcccg gagaaacacc ctgggacaag ctggaccctg
     6961 gcagtgtctt atttaagaaa ctttaaatta tgacgttaag cctcatattt gcactaaaat
     7021 gtttcctggc ttcatctgta tatttcggtg gttgtttttg ttacgctttg acactggaat
     7081 gagttgcaaa aagaaaaaaa agcgccactt tgtgaattcg tgccctcctt taaatacttt
     7141 ttttcctaag tgtccaagct gtcggcacta cccactgtca gtagtgccct tttccaggct
     7201 tgacaagact tgggcgagat tataaatcat gaaacaggta aaagggaggg gaaagcccca
     7261 aactgctgtg gggacatttt ctaatctata tgctacaccc ctggtggtgt tttctttatt
     7321 ggttttacat aatttcaacc tctatatatt atatgtatat atatttttta aaaaacaaaa
     7381 tctatatttt gggaaaaaaa agtctataca gtgtgtcttc ttttcagatt tttttacctt
     7441 tacaaaaaag aaaacaccta aaggctcacc aggatgtgac cggctgggcc agagacaggc
     7501 tctgcggtgt cacggccatc gtctttgttt ccgtgttgtt tcttagccag ctcgtcggtt
     7561 gttccccttc tttagcagat aaccccagca gcaaaccaag ccgctcttac ggccgccaaa
     7621 ctaaccggtc cacagccctc ccttatgcat ctgtgcggtt cgtttgttgt ttgttgtttg
     7681 ttttttcttt tactgtattt ttaatgaatg tatgatgaga aattcaacat ggataatttt
     7741 gaattttctt atcacaaaaa gataaaacaa aggacctcaa tcaactgaag agtttatcag
     7801 ccagtctgag tctgtctgtc ttcacttgaa tgtctttgaa aatatgtaag aaggagtcag
     7861 acgcgtgtcc atgccacgtg caggataaga gcttccacct ttgtatataa ataagccttc
     7921 gccatgtccc ccgtaagatt atccactgtg cttgacgagt gaacattcaa caaacctgtt
     7981 accagttggc attttgggtt aataaaacta taggaattat ttcacaaacg aaatatgtaa
     8041 agcagtatta aaatctgagt tctgtaccta cttcaa
//
