LOCUS       XM_039089732            8136 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CAP-GLY domain containing linker
            protein 1 (Clip1), transcript variant X8, mRNA.
ACCESSION   XM_039089732
VERSION     XM_039089732.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8136
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8136
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 45 ESTs, 1 long SRA read, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
     CDS             242..6712
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X6"
                     /protein_id="XP_038945660.1"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPLEKTVPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQTAHARAASPLSTAAATMVSSSP
                     ATPSNIPQKPSQPVAKETSATPQISNLTKTASESISNLSEAGSVKKGERELKIGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMATTPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLESSKPPGDVDMSLSLLQEISAL
                     QEKLEVTHTDHQNEVTSLKDHFGTREEMFQKEIKALHAATEKLSKENESLRSKLDHAN
                     KENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQ
                     HEIESLQSKQDSERSAHAKEMESMKAKLMKIIKEKEDSLEAVKARLDTAEDQHLVEME
                     EMLSKLQEAEIKVKELEVLQAKYSEQTQVVGHLTSQLSVVEEQLLDLDALRKANSEGK
                     LEIETLRQQLEGAEKQIKNLEMERNAESSKANSITKDLQGKELMLTSLQSNLNEVNQV
                     KETLEKELQTLKEKFASASEEAVSTQTSMQDTVNKLHQKEEQFNMLSSELEKLRENLT
                     DMEAKFKEKDEREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEEL
                     QLKLTKANENASLLQKSIGEVTLKAEQSQQEAAKKHEEEKKELENKLLELEKKMETSH
                     YQCQDLKAKYEKASSETKIKHEEILQNFQKMLVDTEDKLKAAQEANRDLMQDMEELKS
                     QADKAKSLTYLLTSAKKEIEVMSEELRGLKSEKQLFAQEASALKLEKGSLLSKLIEVE
                     TKITLLQEDQQKLWSVNENLHLEKERISEEKQVAEKRYQQEHRDKESLVVEREKLLKE
                     INVTQEELLKMHMEKDSLEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEQLEGQVK
                     KLTAENMVLVKDKDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMNLDNT
                     CLTLKAERENLLQSNRDLQFEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLD
                     CATKALRKAELDMRQLQTSNTSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERAL
                     LAEKEELLNENRVITEKLNKHSEEVTRLEVSLNEKITYLTSEKEMACQKVARLKKQQD
                     SLLKEKSALEVQNGDLLADRESSIKAIGDLKRKYEQEATNRRLAVQEKVKLLGNIDAL
                     KKELQQRKKENQELASSKCDLSLMLKEAQTAKKNLEKEHTSMMQAKEDLNAELKTCCC
                     EKNILLRDGLNLQEECQKLNEEIREIQQTLMLEKEARAKESESSLYESNKLHGRIVLL
                     EEEIQGLRTCSEQLQTENFTLTQEKTNSEQKVVEIIKEKELLSAETAQLAANIETLKS
                     DFAALSKSKLELQELHSCLTKILDDLRLNHEVAVTERAEVLQDNKNLLAEKREMMLRN
                     EEVLKEKEKLEESYFVLQKEISQLAQTNSHISADLLEAQSENRTLRKDKSKLTLKIRE
                     LETLHSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQSELDTLKENNLKT
                     VEELNKSKELLNEENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD
                     EVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEYRKDADEEKASLQKSISLTSALL
                     TEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQ
                     LSSSSGNTDVQTEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNG
                     EDPNSYDSDDQEKQSKKKPRLFCDICDCFDLHDTEDCPTQAQMSEDPPHSTHHGSRSE
                     ERPYCEICEMFGHWATNCNDDETF"
ORIGIN      
        1 cggcggcgcg tcacgttctc ttccccgccc cgagccgaag agccggggag gcgggaggcg
       61 gcggccgcgg cggctgctgc tgctgctgct gctactggga ggcaggtgac ggcgaccgac
      121 ggcgtctcag gcgacttaac caagagacta agttctctat agaaacaccc acatttgtat
      181 ggatgattgg ggaaagatag tggcagcaga caagggaaaa gcatcctgac cttccgagaa
      241 aatgagtatg ctgaaaccca gcgggctgaa ggccccgacc aagatcctaa agcctgggag
      301 cacagccttg aagacccctg ctgctgctgc agctccattg gagaagacag tacccagtga
      361 aaaagcctca ggccctccat cctctgagac ccaagaggag tttgtggacg acttccgagt
      421 tggagaacgt gtttgggtga acgggaataa acctggattt atccagtttc ttggggaaac
      481 tcagtttgca ccaggccagt gggctggtat tgttttggat gaacccatag gaaagaacga
      541 cggctcagtg gcaggagtgc ggtatttcca gtgtgagcct ttaaagggca tcttcacccg
      601 accgtcaaag ctaacgagga aggtacaagc agaggatgaa gccaacggcc tgcagacagc
      661 tcacgcgaga gctgcttcac ctctgtccac tgctgcagcc accatggtgt cctcttctcc
      721 agccactccc tcaaatattc cccagaaacc gtcccagcca gtggcaaaag aaacttcagc
      781 gacacctcaa attagcaacc ttacgaaaac cgccagcgag tcaatctcca acctttcaga
      841 ggctggctct gtcaagaagg gagagcgaga gctcaagatc ggagacaggg tgctggtcgg
      901 tggcacgaag gctggcgtgg tccggtttct tggagagact gacttcgcca agggggagtg
      961 gtgtggtgtg gaattggacg aacctttggg gaagaacgac ggtgctgttg ctggaacaag
     1021 gtattttcaa tgtcaaccca agtacggatt gttcgctccc gtccacaaag tgacaaagat
     1081 tggcttccct tctaccaccc cagccaaagc caaagccgct gctgtgaggc gagtgatggc
     1141 caccacgccc gccagcctga agcgaagccc ttctgcctcc tccctcagct ccatgagctc
     1201 tgtggcctcc tctgtgagca gcaagcccag ccggacagga ctattgactg aaacctcttc
     1261 ccgctacgcc cgcaagatct cgggcaccac tgccctccag gaggcgctga aggagaagca
     1321 gcagcacatt gagcagctgc tggctgagcg ggacctggag cgggccgagg tggccaaggc
     1381 taccagccac gtgggggaaa tagagcagga gctagccctg gcccgagatg ggcatgacca
     1441 gcatgtcctg gaactggagg ccaagatgga ccagctgcgt accatggtag aagctgctga
     1501 cagggagaaa gtggagctcc tcaaccagct ggaagaggag aaaaggaagg ttgaggacct
     1561 tcagttccga gttgaagaag aatcaattac caaaggtgat cttgaggtgg ctacagtatc
     1621 agaaaagtcc cgaataatgg aactagaaaa ggacctagcg ttgagagtac aggaagtagc
     1681 tgagctccga agaaggctag agtccagtaa acctcccgga gatgtggata tgtctctttc
     1741 tcttttgcaa gaaatcagtg ctttgcaaga aaagctagaa gtcacacata ctgaccacca
     1801 gaacgaggtg acgtctctga aggaccactt tggaactcgg gaagagatgt ttcagaagga
     1861 gatcaaggct ctgcacgctg ccactgaaaa gctctccaaa gagaacgagt ccttgaggag
     1921 caagcttgac catgccaaca aggagaactc agacgtcatc gctctgtgga agtccaaact
     1981 ggagaccgcc atcgcgtccc accagcaggc aatggaggag ctgaaggtgt cctttagcaa
     2041 agggattgga actgactcgg ctgagtttgc tgagttaaag acacagatag agagactcag
     2101 actagattac cagcacgaaa tagaaagttt acagagtaag caggactccg aacggtctgc
     2161 ccatgctaaa gagatggagt ccatgaaggc caagctgatg aagatcatca aagagaagga
     2221 ggacagcctg gaggccgtca aagcacggct ggacacggcg gaagaccagc acctggtgga
     2281 gatggaggag atgctcagca agctgcagga ggcagagatt aaggtaaagg aactagaggt
     2341 tctgcaggcc aagtacagtg aacaaaccca ggtcgttggt catctcacat cacaactcag
     2401 tgttgtcgaa gaacagctct tggatctgga tgcccttcgg aaggccaact ccgaaggtaa
     2461 actggagatc gagacactta ggcagcagct tgagggagcc gaaaagcaga ttaaaaactt
     2521 agagatggag aggaacgctg aaagtagcaa ggctaatagc attaccaaag acctccaggg
     2581 aaaagaacta atgctcacta gtctgcagag caatttgaat gaagtcaatc aagtgaagga
     2641 gactttggaa aaagaacttc agactttgaa agaaaagttt gccagcgctt cagaggaggc
     2701 cgtctctact cagacaagta tgcaagatac tgttaataaa ctgcaccaaa aggaggaaca
     2761 gtttaatatg ttgtcttctg aactggagaa gctgagagaa aatttaacag acatggaggc
     2821 aaaatttaaa gagaaggatg aacgggaaga tcagctggta aaggcaaagg aaaagttaga
     2881 aaatgacatt gcagaaataa tgaagatgtc aggggacaac tcttctcagc tgacaaagat
     2941 gaatgacgaa ttacgtctga aggaaaggtc tgtggaagaa ctacaactca aacttacaaa
     3001 ggctaatgaa aatgcaagtc ttctgcagaa aagtatcggg gaagtaactc ttaaagctga
     3061 acagagtcaa caggaagcag ccaaaaaaca tgaagaggaa aagaaagaac tggagaacaa
     3121 attgttggaa ctggaaaaga agatggaaac tagccactac cagtgtcagg acctgaaagc
     3181 caagtatgaa aaagccagtt ctgagactaa aataaagcac gaagaaatcc tgcaaaactt
     3241 ccagaagatg ctggtggaca cggaggataa actgaaggct gcccaggagg ccaacagaga
     3301 cctgatgcag gacatggagg agctgaaatc ccaggccgac aaagccaaat cgctaactta
     3361 tttgttaacg tcagccaaaa aagagattga agtaatgtca gaagagctga ggggtctgaa
     3421 gtcagagaag cagctctttg cccaggaggc aagcgcttta aagttagaga aaggttctct
     3481 tttatcaaag cttatagaag tggagaccaa gataaccttg cttcaggaag accaacagaa
     3541 gctatggtca gtaaacgaaa acctccattt agaaaaggag aggatctccg aggaaaagca
     3601 ggttgccgag aagcgttatc agcaggagca tcgggataag gagtctctgg tggttgagag
     3661 agagaagctg ctgaaggaga tcaatgtgac ccaggaagag ctcctgaaga tgcacatgga
     3721 gaaagactcc ctggaggcct ccaaggtgag catgcaggtg ctgatcgagg agctgcgctt
     3781 ctgcaaggac aaactgatgg ccatgtcgga gaaggcccgg gcagagaagg agcagctgga
     3841 ggggcaggtc aagaagctca ctgcggagaa catggtcttg gtcaaagaca aggatgacgt
     3901 cattcagaaa cttcagagcg cttacgagga gctcgtcaag gaccagaagg ccttggtcca
     3961 agagatcgag gacctcacga ccgagaagaa gtcagccgcc gagaagcaga tgaacctcga
     4021 taacacctgc ctcaccctaa aggcagagcg ggagaacctt ctccagagta accgagacct
     4081 gcagtttgag aaggacacac tgcgccaggg ccaggagaag ctgagcgcca gcctggaggc
     4141 caccctgcag gtcaagcagc tgctcagcac ggaggcagag acgctgcgca cgcagctgga
     4201 ctgcgccacc aaggcgctga ggaaggcgga gctggacatg agacagctgc agacctccaa
     4261 caccagtctc acgaagctcc tggaagagat taagacctgc cgggccatca cggactcgga
     4321 gtgtatccag cttctccatg agaaggagag cttggcggcc tccgagagag cgctcctggc
     4381 ggagaaagag gaactgctaa atgaaaatag ggtcatcact gagaaactca acaaacactc
     4441 ggaagaggta acccgtctcg aggtgagcct gaacgagaag atcacgtacc tgacttctga
     4501 gaaggagatg gcttgtcaga aagtcgctag gctcaaaaag cagcaggaca gcctcttgaa
     4561 agaaaaatca gccctggagg tgcaaaatgg agatctgctt gctgacaggg agagttccat
     4621 caaggccata ggggacctga agaggaaata tgagcaggag gccacaaaca ggcggctcgc
     4681 ggtgcaggag aaggtgaagc tgctgggcaa catcgacgcg ctgaagaaag agcttcagca
     4741 gagaaagaag gagaaccagg agctggcgag cagcaagtgc gacctctcct tgatgctcaa
     4801 agaggctcag acggccaaga agaaccttga aaaagagcac acgagcatga tgcaggccaa
     4861 ggaggacctg aacgccgagc tgaagacgtg ctgctgcgag aagaacatcc tgctgaggga
     4921 tggcttgaac ctgcaggagg agtgtcagaa actaaatgag gagattcggg aaatccaaca
     4981 gacgttaatg ctggagaagg aggccagggc caaggagagc gagagctctt tgtatgaaag
     5041 caacaagctc cacgggagaa tagtgctctt agaggaagag atacaggggc tgaggacatg
     5101 tagtgagcag ctccagactg agaattttac ccttacccaa gagaagacca actcagagca
     5161 aaaagtggtg gagatcatta aggaaaagga acttctgagc gcagagacgg ctcagctcgc
     5221 ggccaacatc gagaccctca aaagtgactt cgctgccctt tccaagtcca agttggaatt
     5281 gcaagaacta cacagctgcc tcaccaagat cctggatgac ctccggctga accatgaggt
     5341 ggccgtgacc gagagggccg aggtgcttca ggacaacaag aacctcctgg ctgagaaacg
     5401 agagatgatg ctgagaaatg aggaggtgct gaaggagaag gagaagctgg aagaaagcta
     5461 cttcgtcctc cagaaggaga ttagccagct ggcccaaacc aacagccaca tttcagccga
     5521 cctcctagaa gcccaaagcg aaaaccggac tttgaggaaa gacaagagca agctaaccct
     5581 taaaattaga gagcttgaga ccctccattc gttcacggct gctcagactg cagaagacgc
     5641 catgcagatc atggaacaga tgaccaaaga gaaaacagaa acactggcct ccttggagga
     5701 caccaagcaa acgaatgcaa aactacagag cgaattggac acacttaagg aaaacaactt
     5761 gaaaactgtg gaagagctga acaagtcaaa agaacttctg aacgaagaga accaaaaaat
     5821 ggaagaattc aagaaggaaa tagaaaccct aaagcaggca gcagctcaga agtcccagca
     5881 gctttcagca ctgcaggaag agaacgtcaa acttgccgag gagctgggga ggacgcggga
     5941 cgaagtcaca agtcatcaaa agctggaaga agaacgatct gtactcaata atcagttgtt
     6001 agaaatgaaa aagagcttac ccagtaacac cttaagagaa tccgagtaca gaaaagacgc
     6061 cgatgaagag aaagcctcct tgcagaaatc catcagcctc accagtgcct tactcacgga
     6121 gaaggacgca gagctggaga agctgaggaa tgaggtcaca gtgctcaggg gggaaaacgc
     6181 ctctgccaag tccctgcact cagtcgtgca gaccctggag tcggataagg tgaagcttga
     6241 gctcaaggtc aaaaacctgg aacttcaact caaggaaaac aagaggcagc tcagcagctc
     6301 ctcaggtaac actgatgttc agacagaaga ggatgagaga gcccaggaga gtcagcaaat
     6361 gattgatttc ctcaactcgg taatagtgga ccttcaaaga aagaaccaag acctcaagat
     6421 gaaggtggag atgatgtctg aagctgcgct gaacggcaac ggggaggatc cgaacagtta
     6481 cgacagtgat gaccaggaga agcagtccaa gaagaaaccc cgcctcttct gtgacatttg
     6541 tgactgcttt gatctccacg acacagagga ctgccccacc caggcgcaga tgtcagaaga
     6601 ccctccgcac tccactcacc acggcagccg gagcgaggag cggccatact gtgagatctg
     6661 tgagatgttt ggccactggg ccaccaactg caacgacgat gagaccttct gaggaggccg
     6721 ggcacacagg actgggcttc ccggacgccg gcccctcagc agctttccac cagcgctgcc
     6781 cacgtgactt cggaagaact ccttattttt tgacccccct gtcaacaaat ctgagaaagt
     6841 attttgatct tcaacagatt tccctttctt ttcctctcgt aagttaaaat aataaacatt
     6901 tggtaggtgg gcttgcactt ccgtccttgt tttctggatt tttaaagttt aagacattgt
     6961 acgaggtgct acagtaactt tttgttcccg gagaaacacc ctgggacaag ctggaccctg
     7021 gcagtgtctt atttaagaaa ctttaaatta tgacgttaag cctcatattt gcactaaaat
     7081 gtttcctggc ttcatctgta tatttcggtg gttgtttttg ttacgctttg acactggaat
     7141 gagttgcaaa aagaaaaaaa agcgccactt tgtgaattcg tgccctcctt taaatacttt
     7201 ttttcctaag tgtccaagct gtcggcacta cccactgtca gtagtgccct tttccaggct
     7261 tgacaagact tgggcgagat tataaatcat gaaacaggta aaagggaggg gaaagcccca
     7321 aactgctgtg gggacatttt ctaatctata tgctacaccc ctggtggtgt tttctttatt
     7381 ggttttacat aatttcaacc tctatatatt atatgtatat atatttttta aaaaacaaaa
     7441 tctatatttt gggaaaaaaa agtctataca gtgtgtcttc ttttcagatt tttttacctt
     7501 tacaaaaaag aaaacaccta aaggctcacc aggatgtgac cggctgggcc agagacaggc
     7561 tctgcggtgt cacggccatc gtctttgttt ccgtgttgtt tcttagccag ctcgtcggtt
     7621 gttccccttc tttagcagat aaccccagca gcaaaccaag ccgctcttac ggccgccaaa
     7681 ctaaccggtc cacagccctc ccttatgcat ctgtgcggtt cgtttgttgt ttgttgtttg
     7741 ttttttcttt tactgtattt ttaatgaatg tatgatgaga aattcaacat ggataatttt
     7801 gaattttctt atcacaaaaa gataaaacaa aggacctcaa tcaactgaag agtttatcag
     7861 ccagtctgag tctgtctgtc ttcacttgaa tgtctttgaa aatatgtaag aaggagtcag
     7921 acgcgtgtcc atgccacgtg caggataaga gcttccacct ttgtatataa ataagccttc
     7981 gccatgtccc ccgtaagatt atccactgtg cttgacgagt gaacattcaa caaacctgtt
     8041 accagttggc attttgggtt aataaaacta taggaattat ttcacaaacg aaatatgtaa
     8101 agcagtatta aaatctgagt tctgtaccta cttcaa
//
