LOCUS       XM_039089727            8274 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CAP-GLY domain containing linker
            protein 1 (Clip1), transcript variant X1, mRNA.
ACCESSION   XM_039089727
VERSION     XM_039089727.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8274
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8274
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 44 ESTs, 1 long SRA read, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
     CDS             242..6850
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X1"
                     /protein_id="XP_038945655.1"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPLEKTVPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQTAHARAASPLSTAAATMVSSSP
                     ATPSNIPQKPSQPVAKETSATPQISNLTKTASESISNLSEAGSVKKGERELKIGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMATTPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLEQKSQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEK
                     SRIMELEKDLALRVQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEVTHTDHQ
                     NEVTSLKDHFGTREEMFQKEIKALHAATEKLSKENESLRSKLDHANKENSDVIALWKS
                     KLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDS
                     ERSAHAKEMESMKAKLMKIIKEKEDSLEAVKARLDTAEDQHLVEMEEMLSKLQEAEIK
                     VKELEVLQAKYSEQTQVVGHLTSQLSVVEEQLLDLDALRKANSEGKLEIETLRQQLEG
                     AEKQIKNLEMERNAESSKANSITKDLQGKELMLTSLQSNLNEVNQVKETLEKELQTLK
                     EKFASASEEAVSTQTSMQDTVNKLHQKEEQFNMLSSELEKLRENLTDMEAKFKEKDER
                     EDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENAS
                     LLQKSIGEVTLKAEQSQQEAAKKHEEEKKELENKLLELEKKMETSHYQCQDLKAKYEK
                     ASSETKIKHEEILQNFQKMLVDTEDKLKAAQEANRDLMQDMEELKSQADKAKSLTYLL
                     TSAKKEIEVMSEELRGLKSEKQLFAQEASALKLEKGSLLSKLIEVETKITLLQEDQQK
                     LWSVNENLHLEKERISEEKQVAEKRYQQEHRDKESLVVEREKLLKEINVTQEELLKMH
                     MEKDSLEASKVSMQVLIEELRFCKDKLMAMSEKARAEKEQLEGQVKKLTAENMVLVKD
                     KDDVIQKLQSAYEELVKDQKALVQEIEDLTTEKKSAAEKQMNLDNTCLTLKAERENLL
                     QSNRDLQFEKDTLRQGQEKLSASLEATLQVKQLLSTEAETLRTQLDCATKALRKAELD
                     MRQLQTSNTSLTKLLEEIKTCRAITDSECIQLLHEKESLAASERALLAEKEELLNENR
                     VITEKLNKHSEEVTRLEVSLNEKITYLTSEKEMACQKVARLKKQQDSLLKEKSALEVQ
                     NGDLLADRESSIKAIGDLKRKYEQEATNRRLAVQEKVKLLGNIDALKKELQQRKKENQ
                     ELASSKCDLSLMLKEAQTAKKNLEKEHTSMMQAKEDLNAELKTCCCEKNILLRDGLNL
                     QEECQKLNEEIREIQQTLMLEKEARAKESESSLYESNKLHGRIVLLEEEIQGLRTCSE
                     QLQTENFTLTQEKTNSEQKVVEIIKEKELLSAETAQLAANIETLKSDFAALSKSKLEL
                     QELHSCLTKILDDLRLNHEVAVTERAEVLQDNKNLLAEKREMMLRNEEVLKEKEKLEE
                     SYFVLQKEISQLAQTNSHISADLLEAQSENRTLRKDKSKLTLKIRELETLHSFTAAQT
                     AEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQSELDTLKENNLKTVEELNKSKELLN
                     EENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEER
                     SVLNNQLLEMKKSLPSNTLRESEYRKDADEEKASLQKSISLTSALLTEKDAELEKLRN
                     EVTVLRGENASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDVQT
                     EEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDPNSYDSDDQE
                     KQSKKKPRLFCDICDCFDLHDTEDCPTQAQMSEDPPHSTHHGSRSEERPYCEICEMFG
                     HWATNCNDDETF"
ORIGIN      
        1 cggcggcgcg tcacgttctc ttccccgccc cgagccgaag agccggggag gcgggaggcg
       61 gcggccgcgg cggctgctgc tgctgctgct gctactggga ggcaggtgac ggcgaccgac
      121 ggcgtctcag gcgacttaac caagagacta agttctctat agaaacaccc acatttgtat
      181 ggatgattgg ggaaagatag tggcagcaga caagggaaaa gcatcctgac cttccgagaa
      241 aatgagtatg ctgaaaccca gcgggctgaa ggccccgacc aagatcctaa agcctgggag
      301 cacagccttg aagacccctg ctgctgctgc agctccattg gagaagacag tacccagtga
      361 aaaagcctca ggccctccat cctctgagac ccaagaggag tttgtggacg acttccgagt
      421 tggagaacgt gtttgggtga acgggaataa acctggattt atccagtttc ttggggaaac
      481 tcagtttgca ccaggccagt gggctggtat tgttttggat gaacccatag gaaagaacga
      541 cggctcagtg gcaggagtgc ggtatttcca gtgtgagcct ttaaagggca tcttcacccg
      601 accgtcaaag ctaacgagga aggtacaagc agaggatgaa gccaacggcc tgcagacagc
      661 tcacgcgaga gctgcttcac ctctgtccac tgctgcagcc accatggtgt cctcttctcc
      721 agccactccc tcaaatattc cccagaaacc gtcccagcca gtggcaaaag aaacttcagc
      781 gacacctcaa attagcaacc ttacgaaaac cgccagcgag tcaatctcca acctttcaga
      841 ggctggctct gtcaagaagg gagagcgaga gctcaagatc ggagacaggg tgctggtcgg
      901 tggcacgaag gctggcgtgg tccggtttct tggagagact gacttcgcca agggggagtg
      961 gtgtggtgtg gaattggacg aacctttggg gaagaacgac ggtgctgttg ctggaacaag
     1021 gtattttcaa tgtcaaccca agtacggatt gttcgctccc gtccacaaag tgacaaagat
     1081 tggcttccct tctaccaccc cagccaaagc caaagccgct gctgtgaggc gagtgatggc
     1141 caccacgccc gccagcctga agcgaagccc ttctgcctcc tccctcagct ccatgagctc
     1201 tgtggcctcc tctgtgagca gcaagcccag ccggacagga ctattgactg aaacctcttc
     1261 ccgctacgcc cgcaagatct cgggcaccac tgccctccag gaggcgctga aggagaagca
     1321 gcagcacatt gagcagctgc tggctgagcg ggacctggag cgggccgagg tggccaaggc
     1381 taccagccac gtgggggaaa tagagcagga gctagccctg gcccgagatg ggcatgacca
     1441 gcatgtcctg gaactggagg ccaagatgga ccagctgcgt accatggtag aagctgctga
     1501 cagggagaaa gtggagctcc tcaaccagct ggaagaggag aaaaggaagg ttgaggacct
     1561 tcagttccga gttgaagaag aatcaattac caaaggtgat cttgagcaaa agagccagat
     1621 ctctgaagac cccgagaata cgcagaccaa actggagcat gcccgcatta aggagcttga
     1681 acagagcctg ctctttgaaa agaccaaagc tgacaaactc cagagggagt tagaagacac
     1741 tagggtggct acagtatcag aaaagtcccg aataatggaa ctagaaaagg acctagcgtt
     1801 gagagtacag gaagtagctg agctccgaag aaggctagag tccagtaaac ctcccggaga
     1861 tgtggatatg tctctttctc ttttgcaaga aatcagtgct ttgcaagaaa agctagaagt
     1921 cacacatact gaccaccaga acgaggtgac gtctctgaag gaccactttg gaactcggga
     1981 agagatgttt cagaaggaga tcaaggctct gcacgctgcc actgaaaagc tctccaaaga
     2041 gaacgagtcc ttgaggagca agcttgacca tgccaacaag gagaactcag acgtcatcgc
     2101 tctgtggaag tccaaactgg agaccgccat cgcgtcccac cagcaggcaa tggaggagct
     2161 gaaggtgtcc tttagcaaag ggattggaac tgactcggct gagtttgctg agttaaagac
     2221 acagatagag agactcagac tagattacca gcacgaaata gaaagtttac agagtaagca
     2281 ggactccgaa cggtctgccc atgctaaaga gatggagtcc atgaaggcca agctgatgaa
     2341 gatcatcaaa gagaaggagg acagcctgga ggccgtcaaa gcacggctgg acacggcgga
     2401 agaccagcac ctggtggaga tggaggagat gctcagcaag ctgcaggagg cagagattaa
     2461 ggtaaaggaa ctagaggttc tgcaggccaa gtacagtgaa caaacccagg tcgttggtca
     2521 tctcacatca caactcagtg ttgtcgaaga acagctcttg gatctggatg cccttcggaa
     2581 ggccaactcc gaaggtaaac tggagatcga gacacttagg cagcagcttg agggagccga
     2641 aaagcagatt aaaaacttag agatggagag gaacgctgaa agtagcaagg ctaatagcat
     2701 taccaaagac ctccagggaa aagaactaat gctcactagt ctgcagagca atttgaatga
     2761 agtcaatcaa gtgaaggaga ctttggaaaa agaacttcag actttgaaag aaaagtttgc
     2821 cagcgcttca gaggaggccg tctctactca gacaagtatg caagatactg ttaataaact
     2881 gcaccaaaag gaggaacagt ttaatatgtt gtcttctgaa ctggagaagc tgagagaaaa
     2941 tttaacagac atggaggcaa aatttaaaga gaaggatgaa cgggaagatc agctggtaaa
     3001 ggcaaaggaa aagttagaaa atgacattgc agaaataatg aagatgtcag gggacaactc
     3061 ttctcagctg acaaagatga atgacgaatt acgtctgaag gaaaggtctg tggaagaact
     3121 acaactcaaa cttacaaagg ctaatgaaaa tgcaagtctt ctgcagaaaa gtatcgggga
     3181 agtaactctt aaagctgaac agagtcaaca ggaagcagcc aaaaaacatg aagaggaaaa
     3241 gaaagaactg gagaacaaat tgttggaact ggaaaagaag atggaaacta gccactacca
     3301 gtgtcaggac ctgaaagcca agtatgaaaa agccagttct gagactaaaa taaagcacga
     3361 agaaatcctg caaaacttcc agaagatgct ggtggacacg gaggataaac tgaaggctgc
     3421 ccaggaggcc aacagagacc tgatgcagga catggaggag ctgaaatccc aggccgacaa
     3481 agccaaatcg ctaacttatt tgttaacgtc agccaaaaaa gagattgaag taatgtcaga
     3541 agagctgagg ggtctgaagt cagagaagca gctctttgcc caggaggcaa gcgctttaaa
     3601 gttagagaaa ggttctcttt tatcaaagct tatagaagtg gagaccaaga taaccttgct
     3661 tcaggaagac caacagaagc tatggtcagt aaacgaaaac ctccatttag aaaaggagag
     3721 gatctccgag gaaaagcagg ttgccgagaa gcgttatcag caggagcatc gggataagga
     3781 gtctctggtg gttgagagag agaagctgct gaaggagatc aatgtgaccc aggaagagct
     3841 cctgaagatg cacatggaga aagactccct ggaggcctcc aaggtgagca tgcaggtgct
     3901 gatcgaggag ctgcgcttct gcaaggacaa actgatggcc atgtcggaga aggcccgggc
     3961 agagaaggag cagctggagg ggcaggtcaa gaagctcact gcggagaaca tggtcttggt
     4021 caaagacaag gatgacgtca ttcagaaact tcagagcgct tacgaggagc tcgtcaagga
     4081 ccagaaggcc ttggtccaag agatcgagga cctcacgacc gagaagaagt cagccgccga
     4141 gaagcagatg aacctcgata acacctgcct caccctaaag gcagagcggg agaaccttct
     4201 ccagagtaac cgagacctgc agtttgagaa ggacacactg cgccagggcc aggagaagct
     4261 gagcgccagc ctggaggcca ccctgcaggt caagcagctg ctcagcacgg aggcagagac
     4321 gctgcgcacg cagctggact gcgccaccaa ggcgctgagg aaggcggagc tggacatgag
     4381 acagctgcag acctccaaca ccagtctcac gaagctcctg gaagagatta agacctgccg
     4441 ggccatcacg gactcggagt gtatccagct tctccatgag aaggagagct tggcggcctc
     4501 cgagagagcg ctcctggcgg agaaagagga actgctaaat gaaaataggg tcatcactga
     4561 gaaactcaac aaacactcgg aagaggtaac ccgtctcgag gtgagcctga acgagaagat
     4621 cacgtacctg acttctgaga aggagatggc ttgtcagaaa gtcgctaggc tcaaaaagca
     4681 gcaggacagc ctcttgaaag aaaaatcagc cctggaggtg caaaatggag atctgcttgc
     4741 tgacagggag agttccatca aggccatagg ggacctgaag aggaaatatg agcaggaggc
     4801 cacaaacagg cggctcgcgg tgcaggagaa ggtgaagctg ctgggcaaca tcgacgcgct
     4861 gaagaaagag cttcagcaga gaaagaagga gaaccaggag ctggcgagca gcaagtgcga
     4921 cctctccttg atgctcaaag aggctcagac ggccaagaag aaccttgaaa aagagcacac
     4981 gagcatgatg caggccaagg aggacctgaa cgccgagctg aagacgtgct gctgcgagaa
     5041 gaacatcctg ctgagggatg gcttgaacct gcaggaggag tgtcagaaac taaatgagga
     5101 gattcgggaa atccaacaga cgttaatgct ggagaaggag gccagggcca aggagagcga
     5161 gagctctttg tatgaaagca acaagctcca cgggagaata gtgctcttag aggaagagat
     5221 acaggggctg aggacatgta gtgagcagct ccagactgag aattttaccc ttacccaaga
     5281 gaagaccaac tcagagcaaa aagtggtgga gatcattaag gaaaaggaac ttctgagcgc
     5341 agagacggct cagctcgcgg ccaacatcga gaccctcaaa agtgacttcg ctgccctttc
     5401 caagtccaag ttggaattgc aagaactaca cagctgcctc accaagatcc tggatgacct
     5461 ccggctgaac catgaggtgg ccgtgaccga gagggccgag gtgcttcagg acaacaagaa
     5521 cctcctggct gagaaacgag agatgatgct gagaaatgag gaggtgctga aggagaagga
     5581 gaagctggaa gaaagctact tcgtcctcca gaaggagatt agccagctgg cccaaaccaa
     5641 cagccacatt tcagccgacc tcctagaagc ccaaagcgaa aaccggactt tgaggaaaga
     5701 caagagcaag ctaaccctta aaattagaga gcttgagacc ctccattcgt tcacggctgc
     5761 tcagactgca gaagacgcca tgcagatcat ggaacagatg accaaagaga aaacagaaac
     5821 actggcctcc ttggaggaca ccaagcaaac gaatgcaaaa ctacagagcg aattggacac
     5881 acttaaggaa aacaacttga aaactgtgga agagctgaac aagtcaaaag aacttctgaa
     5941 cgaagagaac caaaaaatgg aagaattcaa gaaggaaata gaaaccctaa agcaggcagc
     6001 agctcagaag tcccagcagc tttcagcact gcaggaagag aacgtcaaac ttgccgagga
     6061 gctggggagg acgcgggacg aagtcacaag tcatcaaaag ctggaagaag aacgatctgt
     6121 actcaataat cagttgttag aaatgaaaaa gagcttaccc agtaacacct taagagaatc
     6181 cgagtacaga aaagacgccg atgaagagaa agcctccttg cagaaatcca tcagcctcac
     6241 cagtgcctta ctcacggaga aggacgcaga gctggagaag ctgaggaatg aggtcacagt
     6301 gctcaggggg gaaaacgcct ctgccaagtc cctgcactca gtcgtgcaga ccctggagtc
     6361 ggataaggtg aagcttgagc tcaaggtcaa aaacctggaa cttcaactca aggaaaacaa
     6421 gaggcagctc agcagctcct caggtaacac tgatgttcag acagaagagg atgagagagc
     6481 ccaggagagt cagcaaatga ttgatttcct caactcggta atagtggacc ttcaaagaaa
     6541 gaaccaagac ctcaagatga aggtggagat gatgtctgaa gctgcgctga acggcaacgg
     6601 ggaggatccg aacagttacg acagtgatga ccaggagaag cagtccaaga agaaaccccg
     6661 cctcttctgt gacatttgtg actgctttga tctccacgac acagaggact gccccaccca
     6721 ggcgcagatg tcagaagacc ctccgcactc cactcaccac ggcagccgga gcgaggagcg
     6781 gccatactgt gagatctgtg agatgtttgg ccactgggcc accaactgca acgacgatga
     6841 gaccttctga ggaggccggg cacacaggac tgggcttccc ggacgccggc ccctcagcag
     6901 ctttccacca gcgctgccca cgtgacttcg gaagaactcc ttattttttg acccccctgt
     6961 caacaaatct gagaaagtat tttgatcttc aacagatttc cctttctttt cctctcgtaa
     7021 gttaaaataa taaacatttg gtaggtgggc ttgcacttcc gtccttgttt tctggatttt
     7081 taaagtttaa gacattgtac gaggtgctac agtaactttt tgttcccgga gaaacaccct
     7141 gggacaagct ggaccctggc agtgtcttat ttaagaaact ttaaattatg acgttaagcc
     7201 tcatatttgc actaaaatgt ttcctggctt catctgtata tttcggtggt tgtttttgtt
     7261 acgctttgac actggaatga gttgcaaaaa gaaaaaaaag cgccactttg tgaattcgtg
     7321 ccctccttta aatacttttt ttcctaagtg tccaagctgt cggcactacc cactgtcagt
     7381 agtgcccttt tccaggcttg acaagacttg ggcgagatta taaatcatga aacaggtaaa
     7441 agggagggga aagccccaaa ctgctgtggg gacattttct aatctatatg ctacacccct
     7501 ggtggtgttt tctttattgg ttttacataa tttcaacctc tatatattat atgtatatat
     7561 attttttaaa aaacaaaatc tatattttgg gaaaaaaaag tctatacagt gtgtcttctt
     7621 ttcagatttt tttaccttta caaaaaagaa aacacctaaa ggctcaccag gatgtgaccg
     7681 gctgggccag agacaggctc tgcggtgtca cggccatcgt ctttgtttcc gtgttgtttc
     7741 ttagccagct cgtcggttgt tccccttctt tagcagataa ccccagcagc aaaccaagcc
     7801 gctcttacgg ccgccaaact aaccggtcca cagccctccc ttatgcatct gtgcggttcg
     7861 tttgttgttt gttgtttgtt ttttctttta ctgtattttt aatgaatgta tgatgagaaa
     7921 ttcaacatgg ataattttga attttcttat cacaaaaaga taaaacaaag gacctcaatc
     7981 aactgaagag tttatcagcc agtctgagtc tgtctgtctt cacttgaatg tctttgaaaa
     8041 tatgtaagaa ggagtcagac gcgtgtccat gccacgtgca ggataagagc ttccaccttt
     8101 gtatataaat aagccttcgc catgtccccc gtaagattat ccactgtgct tgacgagtga
     8161 acattcaaca aacctgttac cagttggcat tttgggttaa taaaactata ggaattattt
     8221 cacaaacgaa atatgtaaag cagtattaaa atctgagttc tgtacctact tcaa
//
