LOCUS       XM_008769258            5946 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CAP-GLY domain containing linker
            protein 1 (Clip1), transcript variant X15, mRNA.
ACCESSION   XM_008769258
VERSION     XM_008769258.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008769258.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008769258.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5946
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5946
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /note="CAP-GLY domain containing linker protein 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 53 ESTs, 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 104 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
     CDS             242..4522
                     /gene="Clip1"
                     /gene_synonym="CLIP-170; Rsn"
                     /codon_start=1
                     /product="CAP-Gly domain-containing linker protein 1
                     isoform X13"
                     /protein_id="XP_008767480.1"
                     /db_xref="GeneID:65201"
                     /db_xref="RGD:67404"
                     /translation="MSMLKPSGLKAPTKILKPGSTALKTPAAAAAPLEKTVPSEKASG
                     PPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
                     VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQTAHARAASPLSTAAATMVSSSP
                     ATPSNIPQKPSQPVAKETSATPQISNLTKTASESISNLSEAGSVKKGERELKIGDRVL
                     VGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHK
                     VTKIGFPSTTPAKAKAAAVRRVMATTPASLKRSPSASSLSSMSSVASSVSSKPSRTGL
                     LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELA
                     LARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESIT
                     KGDLETQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLA
                     LRVQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEVTHTDHQNEVTSLKDHFG
                     TREEMFQKEIKALHAATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQ
                     AMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMES
                     MKAKLMKIIKEKEDSLEAVKARLDTAEDQHLVEMEEMLSKLQEAEIKVKELEVLQAKY
                     SEQTQVVGHLTSQLSVVEEQLLDLDALRKANSEGKLEIETLRQQLEGAEKQIKNLEME
                     RNAESSKANSITKDLQGKELMLTSLQSNLNEVNQVKETLEKELQTLKEKFASASEEAV
                     STQTSMQDTVNKLHQKEEQFNMLSSELEKLRENLTDMEAKFKEKDEREDQLVKAKEKL
                     ENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASLLQKSIGEVTL
                     KAEQSQQEAAKKHEEEKKELENKLLELEKKMETSHYQCQDLKAKYEKASSETKIKHEE
                     ILQNFQKMLVDTEDKLKAAQEANRDLMQDMEELKSQADKAKAAQTAEDAMQIMEQMTK
                     EKTETLASLEDTKQTNAKLQSELDTLKENNLKTVEELNKSKELLNEENQKMEEFKKEI
                     ETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKR
                     ESEYRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQ
                     TLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDVQTEEDERAQESQIDFLNSVIVD
                     LQRKNQDLKMKVEMMSEAALNGNGEDPNSYDSDDQEKQSKKKPRLFCDICDCFDLHDT
                     EDCPTQAQMSEDPPHSTHHGSRSEERPYCEICEMFGHWATNCNDDETF"
ORIGIN      
        1 cggcggcgcg tcacgttctc ttccccgccc cgagccgaag agccggggag gcgggaggcg
       61 gcggccgcgg cggctgctgc tgctgctgct gctactggga ggcaggtgac ggcgaccgac
      121 ggcgtctcag gcgacttaac caagagacta agttctctat agaaacaccc acatttgtat
      181 ggatgattgg ggaaagatag tggcagcaga caagggaaaa gcatcctgac cttccgagaa
      241 aatgagtatg ctgaaaccca gcgggctgaa ggccccgacc aagatcctaa agcctgggag
      301 cacagccttg aagacccctg ctgctgctgc agctccattg gagaagacag tacccagtga
      361 aaaagcctca ggccctccat cctctgagac ccaagaggag tttgtggacg acttccgagt
      421 tggagaacgt gtttgggtga acgggaataa acctggattt atccagtttc ttggggaaac
      481 tcagtttgca ccaggccagt gggctggtat tgttttggat gaacccatag gaaagaacga
      541 cggctcagtg gcaggagtgc ggtatttcca gtgtgagcct ttaaagggca tcttcacccg
      601 accgtcaaag ctaacgagga aggtacaagc agaggatgaa gccaacggcc tgcagacagc
      661 tcacgcgaga gctgcttcac ctctgtccac tgctgcagcc accatggtgt cctcttctcc
      721 agccactccc tcaaatattc cccagaaacc gtcccagcca gtggcaaaag aaacttcagc
      781 gacacctcaa attagcaacc ttacgaaaac cgccagcgag tcaatctcca acctttcaga
      841 ggctggctct gtcaagaagg gagagcgaga gctcaagatc ggagacaggg tgctggtcgg
      901 tggcacgaag gctggcgtgg tccggtttct tggagagact gacttcgcca agggggagtg
      961 gtgtggtgtg gaattggacg aacctttggg gaagaacgac ggtgctgttg ctggaacaag
     1021 gtattttcaa tgtcaaccca agtacggatt gttcgctccc gtccacaaag tgacaaagat
     1081 tggcttccct tctaccaccc cagccaaagc caaagccgct gctgtgaggc gagtgatggc
     1141 caccacgccc gccagcctga agcgaagccc ttctgcctcc tccctcagct ccatgagctc
     1201 tgtggcctcc tctgtgagca gcaagcccag ccggacagga ctattgactg aaacctcttc
     1261 ccgctacgcc cgcaagatct cgggcaccac tgccctccag gaggcgctga aggagaagca
     1321 gcagcacatt gagcagctgc tggctgagcg ggacctggag cgggccgagg tggccaaggc
     1381 taccagccac gtgggggaaa tagagcagga gctagccctg gcccgagatg ggcatgacca
     1441 gcatgtcctg gaactggagg ccaagatgga ccagctgcgt accatggtag aagctgctga
     1501 cagggagaaa gtggagctcc tcaaccagct ggaagaggag aaaaggaagg ttgaggacct
     1561 tcagttccga gttgaagaag aatcaattac caaaggtgat cttgagacgc agaccaaact
     1621 ggagcatgcc cgcattaagg agcttgaaca gagcctgctc tttgaaaaga ccaaagctga
     1681 caaactccag agggagttag aagacactag ggtggctaca gtatcagaaa agtcccgaat
     1741 aatggaacta gaaaaggacc tagcgttgag agtacaggaa gtagctgagc tccgaagaag
     1801 gctagagtcc agtaaacctc ccggagatgt ggatatgtct ctttctcttt tgcaagaaat
     1861 cagtgctttg caagaaaagc tagaagtcac acatactgac caccagaacg aggtgacgtc
     1921 tctgaaggac cactttggaa ctcgggaaga gatgtttcag aaggagatca aggctctgca
     1981 cgctgccact gaaaagctct ccaaagagaa cgagtccttg aggagcaagc ttgaccatgc
     2041 caacaaggag aactcagacg tcatcgctct gtggaagtcc aaactggaga ccgccatcgc
     2101 gtcccaccag caggcaatgg aggagctgaa ggtgtccttt agcaaaggga ttggaactga
     2161 ctcggctgag tttgctgagt taaagacaca gatagagaga ctcagactag attaccagca
     2221 cgaaatagaa agtttacaga gtaagcagga ctccgaacgg tctgcccatg ctaaagagat
     2281 ggagtccatg aaggccaagc tgatgaagat catcaaagag aaggaggaca gcctggaggc
     2341 cgtcaaagca cggctggaca cggcggaaga ccagcacctg gtggagatgg aggagatgct
     2401 cagcaagctg caggaggcag agattaaggt aaaggaacta gaggttctgc aggccaagta
     2461 cagtgaacaa acccaggtcg ttggtcatct cacatcacaa ctcagtgttg tcgaagaaca
     2521 gctcttggat ctggatgccc ttcggaaggc caactccgaa ggtaaactgg agatcgagac
     2581 acttaggcag cagcttgagg gagccgaaaa gcagattaaa aacttagaga tggagaggaa
     2641 cgctgaaagt agcaaggcta atagcattac caaagacctc cagggaaaag aactaatgct
     2701 cactagtctg cagagcaatt tgaatgaagt caatcaagtg aaggagactt tggaaaaaga
     2761 acttcagact ttgaaagaaa agtttgccag cgcttcagag gaggccgtct ctactcagac
     2821 aagtatgcaa gatactgtta ataaactgca ccaaaaggag gaacagttta atatgttgtc
     2881 ttctgaactg gagaagctga gagaaaattt aacagacatg gaggcaaaat ttaaagagaa
     2941 ggatgaacgg gaagatcagc tggtaaaggc aaaggaaaag ttagaaaatg acattgcaga
     3001 aataatgaag atgtcagggg acaactcttc tcagctgaca aagatgaatg acgaattacg
     3061 tctgaaggaa aggtctgtgg aagaactaca actcaaactt acaaaggcta atgaaaatgc
     3121 aagtcttctg cagaaaagta tcggggaagt aactcttaaa gctgaacaga gtcaacagga
     3181 agcagccaaa aaacatgaag aggaaaagaa agaactggag aacaaattgt tggaactgga
     3241 aaagaagatg gaaactagcc actaccagtg tcaggacctg aaagccaagt atgaaaaagc
     3301 cagttctgag actaaaataa agcacgaaga aatcctgcaa aacttccaga agatgctggt
     3361 ggacacggag gataaactga aggctgccca ggaggccaac agagacctga tgcaggacat
     3421 ggaggagctg aaatcccagg ccgacaaagc caaagctgct cagactgcag aagacgccat
     3481 gcagatcatg gaacagatga ccaaagagaa aacagaaaca ctggcctcct tggaggacac
     3541 caagcaaacg aatgcaaaac tacagagcga attggacaca cttaaggaaa acaacttgaa
     3601 aactgtggaa gagctgaaca agtcaaaaga acttctgaac gaagagaacc aaaaaatgga
     3661 agaattcaag aaggaaatag aaaccctaaa gcaggcagca gctcagaagt cccagcagct
     3721 ttcagcactg caggaagaga acgtcaaact tgccgaggag ctggggagga cgcgggacga
     3781 agtcacaagt catcaaaagc tggaagaaga acgatctgta ctcaataatc agttgttaga
     3841 aatgaaaaag agagaatccg agtacagaaa agacgccgat gaagagaaag cctccttgca
     3901 gaaatccatc agcctcacca gtgccttact cacggagaag gacgcagagc tggagaagct
     3961 gaggaatgag gtcacagtgc tcagggggga aaacgcctct gccaagtccc tgcactcagt
     4021 cgtgcagacc ctggagtcgg ataaggtgaa gcttgagctc aaggtcaaaa acctggaact
     4081 tcaactcaag gaaaacaaga ggcagctcag cagctcctca ggtaacactg atgttcagac
     4141 agaagaggat gagagagccc aggagagtca gattgatttc ctcaactcgg taatagtgga
     4201 ccttcaaaga aagaaccaag acctcaagat gaaggtggag atgatgtctg aagctgcgct
     4261 gaacggcaac ggggaggatc cgaacagtta cgacagtgat gaccaggaga agcagtccaa
     4321 gaagaaaccc cgcctcttct gtgacatttg tgactgcttt gatctccacg acacagagga
     4381 ctgccccacc caggcgcaga tgtcagaaga ccctccgcac tccactcacc acggcagccg
     4441 gagcgaggag cggccatact gtgagatctg tgagatgttt ggccactggg ccaccaactg
     4501 caacgacgat gagaccttct gaggaggccg ggcacacagg actgggcttc ccggacgccg
     4561 gcccctcagc agctttccac cagcgctgcc cacgtgactt cggaagaact ccttattttt
     4621 tgacccccct gtcaacaaat ctgagaaagt attttgatct tcaacagatt tccctttctt
     4681 ttcctctcgt aagttaaaat aataaacatt tggtaggtgg gcttgcactt ccgtccttgt
     4741 tttctggatt tttaaagttt aagacattgt acgaggtgct acagtaactt tttgttcccg
     4801 gagaaacacc ctgggacaag ctggaccctg gcagtgtctt atttaagaaa ctttaaatta
     4861 tgacgttaag cctcatattt gcactaaaat gtttcctggc ttcatctgta tatttcggtg
     4921 gttgtttttg ttacgctttg acactggaat gagttgcaaa aagaaaaaaa agcgccactt
     4981 tgtgaattcg tgccctcctt taaatacttt ttttcctaag tgtccaagct gtcggcacta
     5041 cccactgtca gtagtgccct tttccaggct tgacaagact tgggcgagat tataaatcat
     5101 gaaacaggta aaagggaggg gaaagcccca aactgctgtg gggacatttt ctaatctata
     5161 tgctacaccc ctggtggtgt tttctttatt ggttttacat aatttcaacc tctatatatt
     5221 atatgtatat atatttttta aaaaacaaaa tctatatttt gggaaaaaaa agtctataca
     5281 gtgtgtcttc ttttcagatt tttttacctt tacaaaaaag aaaacaccta aaggctcacc
     5341 aggatgtgac cggctgggcc agagacaggc tctgcggtgt cacggccatc gtctttgttt
     5401 ccgtgttgtt tcttagccag ctcgtcggtt gttccccttc tttagcagat aaccccagca
     5461 gcaaaccaag ccgctcttac ggccgccaaa ctaaccggtc cacagccctc ccttatgcat
     5521 ctgtgcggtt cgtttgttgt ttgttgtttg ttttttcttt tactgtattt ttaatgaatg
     5581 tatgatgaga aattcaacat ggataatttt gaattttctt atcacaaaaa gataaaacaa
     5641 aggacctcaa tcaactgaag agtttatcag ccagtctgag tctgtctgtc ttcacttgaa
     5701 tgtctttgaa aatatgtaag aaggagtcag acgcgtgtcc atgccacgtg caggataaga
     5761 gcttccacct ttgtatataa ataagccttc gccatgtccc ccgtaagatt atccactgtg
     5821 cttgacgagt gaacattcaa caaacctgtt accagttggc attttgggtt aataaaacta
     5881 taggaattat ttcacaaacg aaatatgtaa agcagtatta aaatctgagt tctgtaccta
     5941 cttcaa
//
