LOCUS       NM_001415157            3362 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus clathrin interactor 1 (Clint1), mRNA.
ACCESSION   NM_001415157 XM_039086296
VERSION     NM_001415157.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3362)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3362)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 3362)
  AUTHORS   Redecker,P.
  TITLE     The clathrin interacting protein Clint/epsinR in rat testicular
            germ cells
  JOURNAL   Histochem Cell Biol 123 (4-5), 457-462 (2005)
   PUBMED   15875209
  REMARK    GeneRIF: Clint/epsinR/enthoprotin has been identified in the Golgi
            region of spermatocytes.
REFERENCE   4  (bases 1 to 3362)
  AUTHORS   Kalthoff,C., Groos,S., Kohl,R., Mahrhold,S. and Ungewickell,E.J.
  TITLE     Clint: a novel clathrin-binding ENTH-domain protein at the Golgi
  JOURNAL   Mol Biol Cell 13 (11), 4060-4073 (2002)
   PUBMED   12429846
REFERENCE   5  (bases 1 to 3362)
  AUTHORS   Wasiak,S., Legendre-Guillemin,V., Puertollano,R., Blondeau,F.,
            Girard,M., de Heuvel,E., Boismenu,D., Bell,A.W., Bonifacino,J.S.
            and McPherson,P.S.
  TITLE     Enthoprotin: a novel clathrin-associated protein identified through
            subcellular proteomics
  JOURNAL   J Cell Biol 158 (5), 855-862 (2002)
   PUBMED   12213833
  REMARK    GeneRIF: a novel clathrin-associated protein - enthoprotin ((Enth)
            identified through subcellular proteomics; data suggest a role in
            clathrin-mediated budding on internal membranes.
REFERENCE   6  (bases 1 to 3362)
  AUTHORS   Hoja,M.R., Wahlestedt,C. and Hoog,C.
  TITLE     A visual intracellular classification strategy for uncharacterized
            human proteins
  JOURNAL   Exp Cell Res 259 (1), 239-246 (2000)
   PUBMED   10942595
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 22, 2022 this sequence version replaced XM_039086296.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.476551.1,
                                           SRR26643429.36095.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-208               JAXUCZ010000010.1  30799976-30800183
            209-313             JAXUCZ010000010.1  30827426-30827530
            314-410             JAXUCZ010000010.1  30828047-30828143
            411-519             JAXUCZ010000010.1  30830221-30830329
            520-684             JAXUCZ010000010.1  30831154-30831318
            685-862             JAXUCZ010000010.1  30835447-30835624
            863-1109            JAXUCZ010000010.1  30838915-30839161
            1110-1179           JAXUCZ010000010.1  30840210-30840279
            1180-1254           JAXUCZ010000010.1  30847142-30847216
            1255-1541           JAXUCZ010000010.1  30849978-30850264
            1542-1692           JAXUCZ010000010.1  30851686-30851836
            1693-3362           JAXUCZ010000010.1  30852844-30854513
FEATURES             Location/Qualifiers
     source          1..3362
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q21"
     gene            1..3362
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /note="clathrin interactor 1"
                     /db_xref="GeneID:360515"
                     /db_xref="RGD:1303328"
     exon            1..208
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /inference="alignment:Splign:2.1.0"
     CDS             168..2039
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /note="epsin 4; enthoprotin"
                     /codon_start=1
                     /product="clathrin interactor 1"
                     /protein_id="NP_001402086.1"
                     /db_xref="GeneID:360515"
                     /db_xref="RGD:1303328"
                     /translation="MLNMWKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLM
                     GEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAR
                     EHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYV
                     GVSSDSVGGFRYNERYDPEPKSKWDEEWDKNKSAFPFSDKLGELSDKIGSTIDDTISK
                     FRRKDREDSPERCSDSDEEKKARRGRSPKGEFKDEEETVTTKHIHITQATETTTTRHK
                     RTANPSKTIDLGAAAHYTGDKASPDQNASTHTPQSSAKPSVPSSKSSGDLVDLFDGSG
                     QTTGGATDLFGGFADFGSAAASGSFPSQATSGNGDFGDWSAFNQAPSGPVASGGELFG
                     SAPQPAVELISGSQPALGPPPAASNSSDLFDLMGSSQATMTSSQSMNFSLMSTNTVGL
                     GLPMSRSQNADMVQKSASKTLPSTWSDPSVNISLDNLLPGMQPSKPQQPSLNTMIQQQ
                     NMQQPLNVMTQSFGAVNLSSPSNMLPVRPQTNPLMGGPMPMNMPGVMTGTMGMAPLGN
                     TAGMSQGIVGMNMNMGMSASGMGLTGTMGMGMPSMAMPSGTVQPKQDAFANFANFSK"
     exon            209..313
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /inference="alignment:Splign:2.1.0"
     exon            314..410
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /inference="alignment:Splign:2.1.0"
     exon            411..519
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /inference="alignment:Splign:2.1.0"
     exon            520..684
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /inference="alignment:Splign:2.1.0"
     exon            685..862
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /inference="alignment:Splign:2.1.0"
     exon            863..1109
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /inference="alignment:Splign:2.1.0"
     exon            1110..1179
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /inference="alignment:Splign:2.1.0"
     exon            1180..1254
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /inference="alignment:Splign:2.1.0"
     exon            1255..1541
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /inference="alignment:Splign:2.1.0"
     exon            1542..1692
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /inference="alignment:Splign:2.1.0"
     exon            1693..3362
                     /gene="Clint1"
                     /gene_synonym="Clint; Enth; Epn4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actggaggcg ccgtggctgt ggccgggaga aggagctctg gctagggaga gttcacggcg
       61 gtgggtggcg gcggcgaccc cgacctggac cagccccggc gcggaggcga ctcggggtcc
      121 gtggagagtg gcggcgggcg gcggcgggcc gggccgcgcg gggcgcgatg ctgaacatgt
      181 ggaaggtgcg ggagctggtg gacaaagcca ccaatgtggt tatgaattat tcagagatcg
      241 agtccaaagt tcgagaagca acgaatgatg atccttgggg accttctggg cagctcatgg
      301 gagagattgc caaggctact tttatgtatg aacagttccc agaacttatg aacatgcttt
      361 ggtcccgaat gctaaaagac aacaaaaaga attggagaag agtttataag tcgttgctgc
      421 tcctagctta cctcataaga aatggatcgg agcgagttgt tacaagcgcc agagaacaca
      481 tttatgattt gcgatccctg gaaaattacc actttgtaga tgagcatggc aaggatcaag
      541 gtataaacat ccgacagaaa gtgaaggagc tggttgagtt tgcacaggat gatgacagac
      601 ttcgagagga gaggaagaaa gcaaagaaga acaaagacaa gtatgtcggg gtctcctcag
      661 acagcgttgg cggattccga tacaatgaac ggtatgaccc tgagcccaag tccaaatggg
      721 acgaagagtg ggataagaac aagagtgcgt ttccattcag tgacaagcta ggggagctga
      781 gcgacaagat cgggagcaca atcgacgaca ccatcagcaa gttccggagg aaagaccggg
      841 aggactctcc ggaaaggtgc agtgacagcg atgaggaaaa gaaagcaagg agaggcaggt
      901 ctcccaaagg tgaattcaaa gatgaagagg agacggtgac gacgaagcac atccacatca
      961 cacaggccac agagaccacc accacccggc acaagcgcac agcaaaccct tccaaaacca
     1021 tcgatcttgg agcagcagca cattacacag gggacaaagc cagcccagat caaaacgctt
     1081 caacccacac gcctcagtca tcagcgaagc catccgtgcc gagcagcaag tcatcagggg
     1141 acctcgttga cctgtttgat ggcagtggcc agacaacagg aggagcaact gacttattcg
     1201 ggggatttgc cgactttggc tctgctgctg catcgggcag tttcccttcc caagcaacaa
     1261 gtgggaatgg agactttggt gactggagtg ccttcaacca agccccatca ggccctgttg
     1321 cttctggtgg tgagctcttc ggcagtgccc cacagcctgc tgtagaactc atcagtggtt
     1381 cacagccagc tttaggccca cctcctgctg cctcaaactc ttcagatctc tttgatctta
     1441 tgggctcatc ccaggcaacc atgacgtctt cccagagtat gaatttctct ctaatgagca
     1501 ctaacactgt gggacttggt ttgcccatgt caagatcaca gaatgcagat atggtccaga
     1561 agtcggccag caaaaccctg ccctctactt ggtctgaccc cagtgtcaac atcagcctag
     1621 acaacttact acctggtatg cagccttcta agccccagca gccatcgctt aacacaatga
     1681 ttcaacaaca gaatatgcaa cagcctctga atgtgatgac tcaaagcttc ggagccgtga
     1741 acctcagttc tccatcaaac atgcttcctg tccggccaca aactaaccct ctgatggggg
     1801 gacccatgcc tatgaacatg cccggtgtaa tgacgggcac catgggaatg gcccctctgg
     1861 ggaacaccgc agggatgagc cagggcatag tgggcatgaa catgaacatg gggatgtcgg
     1921 cctcggggat gggcttgaca ggcaccatgg gaatggggat gcccagcatg gccatgccgt
     1981 ctggaactgt gcagcccaag caagatgcct ttgcaaactt tgccaacttt agtaaataaa
     2041 aggttgtaac ggagcgagtg gaagaagcct ctgtagctgc aataggtgat gttgggctgg
     2101 aagatgctaa gcagttccct tttctttcat cagttaatta aataaccaca taaagaacca
     2161 aaaaggctgc tgtttcagaa gcgatgcaag agcacttcag acgaggcagt caggatcggt
     2221 ttccccagtg aagatacata cgctcctaat ggggcgaggg ggcacgagag cctctctgtc
     2281 agagagcatg tgtcccagcg tagtctgtgg gaggactggc atggatgggg ctgagtaagt
     2341 gtgcttcact ctctaacttt atactttctc tccctgagga acttgatttt ctgtccctca
     2401 gtcgccttgt catgattggg tctgttcctt tactaccact ctcaagtcca tgtatgaaat
     2461 cattaaagtt gggtgatcag ttttttataa aaatatatat ttttgtccaa aaaaaaggca
     2521 tacctatgtg attatggctg agtcagaggt aactggatgt gtgtactttg ccaggctcca
     2581 gcagtgctgc tacccaccat ctgagtctgc atggaatcca ccctcttccc gcaggcagcg
     2641 ggcagtggct gtgaggcttc ccattgcccg tgcagcccgg ggaaagcctt cctcagggcc
     2701 gctctgcggt ttccctaaca gaggagaagg aagaccatgt gttgtttgtt tgtagcagtt
     2761 gttcattgcc ctttgcagcg actgacttgg caaagctgct tcctgtgtgt atccttggag
     2821 ccatcattca agtcagaaac agtcaaaaga gaaaaatatt tatttttatc ttttttggtg
     2881 tcttttcaaa aaattgaaag gtaaaaatac attaaaacct taagttaatg tacatgttag
     2941 gactcagcaa cgttcacatt tagattttat accgtatttg ttttgtttgc gttttgagtg
     3001 taataccgca ttagcaatat ggttccaata gaagttcgat atatattatt aaaggagacc
     3061 tgtagcagtc agagatttta ttgatttaat gacaaataaa ggaaattaat taaatgtttt
     3121 ttttttcctg ctgtgattct gcattaagct cacatgaaaa tcatgattct agagtttgga
     3181 atgcaaaatt aaatgtttca acctcaagct gggaatattt tttaaaataa atactataag
     3241 tatcaaatta ttatctcccc cactttatgt tgaaattttt tttattgaat tggtacaagt
     3301 ttgtttccat tgtattcatg atgttctgtt ctatataaca ttaaaacatt cattaaaacc
     3361 aa
//
