LOCUS       NM_001013080             792 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus chloride intracellular channel 3 (Clic3), mRNA.
ACCESSION   NM_001013080 XM_238312
VERSION     NM_001013080.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta
            R, Wang NS and Knepper MA.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Shultz MA, Zhang L, Gu YZ, Baker GL, Fannuchi MV, Padua AM, Gurske
            WA, Morin D, Penn SG, Jovanovich SB, Plopper CG and Buckpitt AR.
  TITLE     Gene expression analysis in response to lung toxicants: I.
            Sequencing and microarray development
  JOURNAL   Am J Respir Cell Mol Biol 30 (3), 296-310 (2004)
   PUBMED   12947022
REFERENCE   3  (bases 1 to 792)
  AUTHORS   Qian Z, Okuhara D, Abe MK and Rosner MR.
  TITLE     Molecular cloning and characterization of a mitogen-activated
            protein kinase-associated intracellular chloride channel
  JOURNAL   J Biol Chem 274 (3), 1621-1627 (1999)
   PUBMED   9880541
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF115110.1 and CK841958.1.
            
            On Jan 12, 2008 this sequence version replaced NM_001013080.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CF115110.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132306, SAMEA5756307
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-638               CF115110.1         1-638
            639-792             CK841958.1         1-154               c
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..792
                     /gene="Clic3"
                     /note="chloride intracellular channel 3"
                     /db_xref="GeneID:296566"
                     /db_xref="RGD:1307249"
     exon            1..45
                     /gene="Clic3"
                     /inference="alignment:Splign:2.1.0"
     CDS             10..723
                     /gene="Clic3"
                     /codon_start=1
                     /product="chloride intracellular channel protein 3"
                     /protein_id="NP_001013098.2"
                     /db_xref="GeneID:296566"
                     /db_xref="RGD:1307249"
                     /translation="MAETTKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTT
                     VDTRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLEETLGPPDFPGLAPRYRES
                     NTAGNDIFHKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLGTPLDHELAQEPHLSES
                     RRRFLDGDQLTLADCSLLPKLHIVDTVCAHFRQRPIPAELSCVRRYLDSALQEKEFKY
                     TCPHSAEILAAYQPAVHPR"
     exon            46..155
                     /gene="Clic3"
                     /inference="alignment:Splign:2.1.0"
     exon            156..281
                     /gene="Clic3"
                     /inference="alignment:Splign:2.1.0"
     exon            282..388
                     /gene="Clic3"
                     /inference="alignment:Splign:2.1.0"
     exon            389..564
                     /gene="Clic3"
                     /inference="alignment:Splign:2.1.0"
     exon            565..776
                     /gene="Clic3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctcccacca tggctgaaac caccaagctc cagctctttg tgaaggccag tgaggatggc
       61 gagagcgtgg gacactgccc ttcctgtcag cggctcttca tggtcctgct cctcaagggc
      121 gtgcccttca cactcaccac agtggacaca cgaagggcat tggatgtgct gaaggacttc
      181 gcaccgggat cacaattgcc catcctactc tatgatgggg acgtcaagac agacacactg
      241 cagattgagg agtttctgga agagacattg gggccacccg actttcctgg cctggcacct
      301 aggtacaggg agtccaacac agcaggcaat gacatcttcc acaagttctc tgccttcatc
      361 aagaacccag tgcctacaca ggacgatgcc ctgtatcagc agctgctccg ggccctgacc
      421 aggctggaca ggtacctggg tacaccactg gaccatgaac tggcacagga gccacacctt
      481 tctgaatccc gccgccgctt tctcgatggt gaccagctca cgttggctga ctgcagcctg
      541 ctacccaagc tgcacattgt ggataccgtg tgtgcgcact tccgccagag gcccatccct
      601 gcggaactgt cctgcgttcg ccgctacttg gacagtgcat tgcaggagaa agagttcaag
      661 tacacgtgtc cacacagcgc agagatcctg gcagcctacc agcctgctgt gcacccccgc
      721 tagcacccct acctccatac actcatctgc attcccataa agcatctctg ccacaaaaaa
      781 aaaaaaaaaa aa
//
