LOCUS       NM_001013877            2101 bp    mRNA    linear   ROD 09-FEB-2025
DEFINITION  Rattus norvegicus clathrin heavy chain linker domain containing 1
            (Clhc1), mRNA.
ACCESSION   NM_001013877 XM_223711
VERSION     NM_001013877.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083604.1.
            
            On Apr 20, 2005 this sequence version replaced XM_223711.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083604.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q22"
     gene            1..2101
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /note="clathrin heavy chain linker domain containing 1"
                     /db_xref="GeneID:289865"
                     /db_xref="RGD:1307937"
     exon            1..118
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /inference="alignment:Splign:2.1.0"
     exon            119..378
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /inference="alignment:Splign:2.1.0"
     CDS             202..1959
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /note="uncharacterized protein C2orf63 homolog"
                     /codon_start=1
                     /product="clathrin heavy chain linker domain-containing
                     protein 1"
                     /protein_id="NP_001013899.1"
                     /db_xref="GeneID:289865"
                     /db_xref="RGD:1307937"
                     /translation="MPTQEVKKHAVLPPIISRNDKEFLESMQRYIITETKRVGCNEEG
                     PPDEYYTIYRNVFDKVIDYVNAYKSVLTSIKKEYDAFIETVKKGRRNAFYLHGKLKVL
                     AAEPTALVYHQRRTIQLEAKMRIIDNNSKAIQLQIDQMKQLRMEYENTEVKLCASSKQ
                     LWKPIPGMTLQDSVNLDALNNHKQNLEDKCRKLKQDMSTMYVSAQKKADLDEEMIVLL
                     KRRDIAENLNKDLRFRHQRLQVISHTLNSWMKQNMRIPFKDVLERIQQTKAIYGHAKV
                     VDELFEDDPNKTKEAIVMLYYIERFHELISLGEYEKAACFAANSPKRILQNAGTMNKF
                     KAIGKVRGKPLPLLLFFEAIFNTSQAFKRAINVDLTLEGIKCGLSEERLDLVTHWVTQ
                     AKLTFSEKVGDAICAYGEQHPYHKSKCLALAQIVYNECGLHKKAILCLCRQGQFHEAM
                     EHIQQSKDINTDDLIQLITACPQIDLIRGLTEERNGKPPFLSFGLTVLHLFSVDMKKI
                     GMKLLQEVSKAEKDVIEHLVMSDLFCSIEKWQELANICLQNGFKNLSNDIMSILRSQA
                     GVSEISEDDTTNVMEHVFW"
     exon            379..566
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /inference="alignment:Splign:2.1.0"
     exon            567..700
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /inference="alignment:Splign:2.1.0"
     exon            701..902
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /inference="alignment:Splign:2.1.0"
     exon            903..1015
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /inference="alignment:Splign:2.1.0"
     exon            1016..1100
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /inference="alignment:Splign:2.1.0"
     exon            1101..1207
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /inference="alignment:Splign:2.1.0"
     exon            1208..1382
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /inference="alignment:Splign:2.1.0"
     exon            1383..1585
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /inference="alignment:Splign:2.1.0"
     exon            1586..1765
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /inference="alignment:Splign:2.1.0"
     exon            1766..2070
                     /gene="Clhc1"
                     /gene_synonym="RGD1307937"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaatggcctc gaaatggtgt gctcaactaa aaatgcctca aaaggctttc ttatgcagcc
       61 gatgcgatca agagggactt tacttttaag ggggctcgtg gagcttgaga aaagagaggc
      121 ccactaaagt tttttggctt tgttgcaaaa gaaggtcaag gtttaatttt tctccgtgaa
      181 catgcttgca gattaagagt tatgccaacc caagaagtaa agaaacatgc agttctccct
      241 cctatcatta gtagaaatga caaggagttt ttggaaagca tgcaaagata cattattaca
      301 gaaaccaaaa gagtgggttg caacgaggaa ggacctcctg atgagtatta caccatttac
      361 cgaaatgttt tcgacaaggt aatagactat gtcaatgcat acaagtccgt tcttacttca
      421 atcaaaaaag aatatgatgc ctttattgag acagtaaaga aaggccggag aaatgcattt
      481 tatcttcatg gaaaacttaa agttttggca gcagagccta cagcgttggt gtatcaccag
      541 agaagaacaa tccagcttga agcgaaaatg aggattattg ataataattc caaagcaatt
      601 caattacaaa tagatcagat gaagcagctg agaatggagt atgagaatac agaagtaaag
      661 ctctgtgctt cctccaagca gctttggaaa cctatcccag ggatgaccct ccaagactct
      721 gtcaatctgg acgctctcaa taatcataag cagaatcttg aagataaatg tagaaaacta
      781 aaacaagaca tgtcaacaat gtatgtatca gcccaaaaga aagctgacct agatgaggaa
      841 atgattgtgt tactaaaacg gcgagatata gctgaaaatc tgaacaaaga cctgcggttt
      901 cgccatcaaa gattgcaggt tatttcacac acacttaatt catggatgaa gcagaacatg
      961 aggattccat ttaaagatgt cttggagaga attcagcaaa ccaaagctat ctatggtcat
     1021 gcaaaggttg ttgatgagct atttgaagat gacccaaaca agacaaaaga agctatagtt
     1081 atgctttact acatcgaaag gttccatgaa ttaatctccc ttggtgaata tgaaaaggca
     1141 gcttgttttg cagcaaacag tccaaaaaga attcttcaaa atgctggtac aatgaataaa
     1201 tttaaggcca ttggaaaagt tagaggaaag cctctcccat tactcttgtt ttttgaggct
     1261 atatttaata ccagtcaagc tttcaaacgt gctattaatg ttgacctaac cttggaggga
     1321 atcaaatgtg gattatctga ggaacgactt gatttagtta cccactgggt tacccaggca
     1381 aagctgacat tttctgagaa ggttggcgac gctatttgtg cttatggaga gcagcaccca
     1441 taccacaagt ccaaatgctt ggcgttagct cagattgtct acaatgaatg tgggctacac
     1501 aagaaagcta ttctttgcct gtgtagacag ggtcagtttc atgaggctat ggaacatata
     1561 caacagtcca aggacattaa cactgatgac ctgatacagc taataacagc atgcccccag
     1621 attgacttaa tcagaggtct tactgaagaa aggaatggga aaccaccatt tttatctttt
     1681 gggcttactg tactccatct gttttctgtg gatatgaaaa aaattggcat gaagctactt
     1741 caggaagtca gtaaagctga gaaagatgtg atcgaacatc ttgtgatgag tgatttattt
     1801 tgctccatag aaaagtggca agaactagca aatatatgtt tgcaaaatgg ttttaaaaat
     1861 ttgtccaatg acatcatgtc cattcttcga tcccaggctg gtgtttcaga aatttccgaa
     1921 gatgatacca ccaacgtaat ggaacatgtt ttttggtaat tctttatttt aaccacccga
     1981 gggcgcttgt acaacatttt acaggcattg acttgggaag ctggttttag cataattaat
     2041 ttataaataa atgttaaata taaagctcta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2101 a
//
