LOCUS       NM_001109354            3254 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus C-type lectin domain containing 9A (Clec9a),
            mRNA.
ACCESSION   NM_001109354 XM_001067888 XM_578403
VERSION     NM_001109354.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3254)
  AUTHORS   Flornes,L.M., Nylenna,O., Saether,P.C., Daws,M.R., Dissen,E. and
            Fossum,S.
  TITLE     The complete inventory of receptors encoded by the rat natural
            killer cell gene complex
  JOURNAL   Immunogenetics 62 (8), 521-530 (2010)
   PUBMED   20544345
REFERENCE   2  (bases 1 to 3254)
  AUTHORS   Huysamen,C., Willment,J.A., Dennehy,K.M. and Brown,G.D.
  TITLE     CLEC9A is a novel activation C-type lectin-like receptor expressed
            on BDCA3+ dendritic cells and a subset of monocytes
  JOURNAL   J Biol Chem 283 (24), 16693-16701 (2008)
   PUBMED   18408006
REFERENCE   3  (bases 1 to 3254)
  AUTHORS   Sancho,D., Mourao-Sa,D., Joffre,O.P., Schulz,O., Rogers,N.C.,
            Pennington,D.J., Carlyle,J.R. and Reis e Sousa,C.
  TITLE     Tumor therapy in mice via antigen targeting to a novel,
            DC-restricted C-type lectin
  JOURNAL   J Clin Invest 118 (6), 2098-2110 (2008)
   PUBMED   18497879
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473964.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001067888.1, XM_578403.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ132394.1, FQ151748.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMN09345330
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3254
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..3254
                     /gene="Clec9a"
                     /gene_synonym="RGD1562513"
                     /note="C-type lectin domain containing 9A"
                     /db_xref="GeneID:502901"
                     /db_xref="RGD:1562513"
     exon            1..187
                     /gene="Clec9a"
                     /gene_synonym="RGD1562513"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..822
                     /gene="Clec9a"
                     /gene_synonym="RGD1562513"
                     /note="C-type lectin domain family 9, member A"
                     /codon_start=1
                     /product="C-type lectin domain family 9 member A"
                     /protein_id="NP_001102824.1"
                     /db_xref="GeneID:502901"
                     /db_xref="RGD:1562513"
                     /translation="MHEEEIYTSLQWDIPTSEASQKCPSLSKCPGTWCIVTVISCVVC
                     VGLLAASIFLGIKFSQVSSLVMEQRERLIRQDTALLNLTEWQRNHTLQLKSCQASLQR
                     SLRSGSNCNPCPPNWIQNGKSCYYAFDRWETWNNSKKSCLKEGDSLLQIDSKEEMEFI
                     NLSIWKLKGGYEYWVGVFQDGPSGSWFWEDGSSPLSDLLPTDRQLSASQICGYLKDHT
                     LISDNCSNWKYFICEKKAFGSCI"
     exon            188..268
                     /gene="Clec9a"
                     /gene_synonym="RGD1562513"
                     /inference="alignment:Splign:2.1.0"
     exon            269..415
                     /gene="Clec9a"
                     /gene_synonym="RGD1562513"
                     /inference="alignment:Splign:2.1.0"
     exon            416..567
                     /gene="Clec9a"
                     /gene_synonym="RGD1562513"
                     /inference="alignment:Splign:2.1.0"
     exon            568..689
                     /gene="Clec9a"
                     /gene_synonym="RGD1562513"
                     /inference="alignment:Splign:2.1.0"
     exon            690..3254
                     /gene="Clec9a"
                     /gene_synonym="RGD1562513"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tccatttttt ttgtaccagc ctactcctga ctactaaaga agttctttgt gttgggctcc
       61 tatgttgact gctttacctc tccaagcacc ttcagcatgc atgaggaaga aatatacacc
      121 tctcttcagt gggacattcc aacctcagag gcctctcaga agtgtccatc ccttagcaaa
      181 tgtccaggaa catggtgtat tgtgacggtg atttcctgtg tggtctgtgt gggcttacta
      241 gcagcatcca ttttcttggg catcaagttc tcccaggtgt cctctcttgt aatggagcag
      301 cgggaaaggc tcatccgaca ggacacagca ttgctgaacc tcacagagtg gcagaggaac
      361 catacactgc agttaaaaag ctgccaagcc tcactacaaa gatctctccg ttcaggcagt
      421 aactgcaacc cttgtccacc gaactggatt cagaatggaa aaagttgtta ctatgccttt
      481 gaccgctggg aaacgtggaa caacagtaag aagagttgtt taaaagaggg cgatagtctc
      541 cttcaaatag acagcaaaga agaaatggag tttatcaacc tcagtatatg gaagctcaaa
      601 ggaggatatg aatactgggt gggagtgttt caagatggac ccagtggatc ttggttttgg
      661 gaagatggct cttctcctct ctctgacttg ttgccaacag acagacagct atcagccagc
      721 cagatctgtg gatacctcaa agaccatact ctcatctcgg ataactgcag taactggaaa
      781 tattttatct gtgagaagaa ggcatttgga tcctgcatct gaaagataca actcaaagct
      841 acctgctaca caagtgttcg aaagaggtca gagagcaaat gcaggaggag gttggtgtga
      901 ggcctacaaa ggcaaacttg ctttttcata tgaacttggc aatattctat aatgctttga
      961 aaatttcagt tgaccttgtc cattgtaccc aggagaaaat tgatttaggg ctacagaaga
     1021 cctgactcat tgagaacaag gaagagaaaa tcatttcccg tctgtttgaa agtccaaagt
     1081 gactatccat accgcacaga catctagctg tctttgtagg agtttttaca gtaatccctg
     1141 gtttgctttt ttttttagta aacaattcta cctactatac ttacaactga ccaaggatca
     1201 cagaatttct ttactgagag cttttcttca gatcagcttc cagtcatggt gtatcataag
     1261 attacacact gagaggagag agatggaatt ctaaatggta gtgttaccag caatcacata
     1321 ctagggggac ttaggtgcta gataaaaatg agcagaatgg ggcctccagt attggtaata
     1381 ttcttctgag actcaaggcc taggaggctg aaactcacgg atatagagat ttacagtttc
     1441 taacccttgg agctagggga ttattgctct aggatctgaa tgctcaggtt aaaggcttat
     1501 agcttttcgt tttaatcagt actgactcca gatcttgaca gctttcacaa tccctgacct
     1561 ttagctgtag ccttagacag cagtcagtag cagcaggcag ctcccactgg tcttataatt
     1621 cttggatggc tgtagggtga tgggcattaa ctctgcagtg accactatta cagtcctctg
     1681 atctagaatg tgggaatctc tcgtcagcct ctgttggctg ttagtgttgc agctctcagt
     1741 atagattttc tgtgatcctt ggtcctaaag actgcagctc cttgacactc tttcaggtcc
     1801 ccaagcccat gtttctcctc tctggtttgc cacacagcct tctgtgttta ttcagacttg
     1861 agtttctgcc ttctttcttc ttgtctctga ctctaccatt ccttggcatc tctctgattc
     1921 ttctgcccca cgctttctgt catggcccct ctctggaatt cttcagctgt tcttttgtct
     1981 ctcgactgcc actgccactg ccacagtggc tgctgtcacc accagagccg ctcgcttgct
     2041 tgcctttgca accatcttgt gcttctgcgt cttctctttg tgttaacggc tcaggccact
     2101 cctctaatga tgcagagcaa aagagccaag agaaagggcc attcaggaag tcttttattg
     2161 gtcctaatgt tgcagcttca ggagtgtcag aggagggggt gttctggctg actctaaagc
     2221 tgaaccaaac aggttatttt atagataaga aggaggtgtg ataagggtgt gtgtcccttc
     2281 acagcagccc ttcaaggact gtgtttgtac catcacagca cagactactg tttagacagt
     2341 cacaggtctt tccctagggc cgtgatcgga aatgcgcccc ctctggcctg agagagaaca
     2401 gctgcaggat ctctgggtct gtgttgtttg ccaagacttc tctttccata ggctgttttg
     2461 gtggtgtgag cagttccgac tggagcctgt cttcagtcat ggagtggtgt attcttcagc
     2521 ttctttacct cagagtaaaa tggccaaact gctggactgt cattgagggc agtctggcca
     2581 gttgtttgta aacaggctgc ttggttggta gcttaaatca ttcattccca gacattaaaa
     2641 gtgtgcttac aataaatact taataaaacc ccactgtatt acaagtctaa tagcatttga
     2701 cagtacttaa taaaaatgaa catttagcgg gatttaactt ctgccccaaa gctgtagaat
     2761 cattgaatcc ctctcatctg tctcagaagg aaacagggtt ctactctctg tggattgtgc
     2821 ttttcagact gcagagttct gctgggaaag aaactattag aatttcacgt aggtaaagga
     2881 ataggctaga catctgcacg tcccgttgtg taggcgggac ctcccatctt attgctcacg
     2941 aatcaaacgg ctctgtctgc actgacagga tgaactacct agcacttcta actgacggtc
     3001 cccgtgcctc aacttccctg ctataaaact gtaatatgat tcacttcaaa atatcgctta
     3061 agaatgtcat ccaaatgcta cacgctaact atagaaaatg gtattttagg caggaaaggg
     3121 aaaattaaaa tgtgtgacat ctaccagaag aaaaatttgc aaatgatcgt tatcatgttc
     3181 ccatgacata gatatttcgt gtgtcatctc tgtcatactg catagcatgc tcttaataaa
     3241 tatttgctaa attc
//
