LOCUS       NM_001109377            1394 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus C-type lectin domain containing 5A (Clec5a),
            mRNA.
ACCESSION   NM_001109377 XM_001054464
VERSION     NM_001109377.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1394)
  AUTHORS   Inoue,D., Kitaura,J., Togami,K., Nishimura,K., Enomoto,Y.,
            Uchida,T., Kagiyama,Y., Kawabata,K.C., Nakahara,F., Izawa,K.,
            Oki,T., Maehara,A., Isobe,M., Tsuchiya,A., Harada,Y., Harada,H.,
            Ochiya,T., Aburatani,H., Kimura,H., Thol,F., Heuser,M.,
            Levine,R.L., Abdel-Wahab,O. and Kitamura,T.
  TITLE     Myelodysplastic syndromes are induced by histone
            methylation-altering ASXL1 mutations
  JOURNAL   J Clin Invest 123 (11), 4627-4640 (2013)
   PUBMED   24216483
REFERENCE   2  (bases 1 to 1394)
  AUTHORS   Inui,M., Kikuchi,Y., Aoki,N., Endo,S., Maeda,T.,
            Sugahara-Tobinai,A., Fujimura,S., Nakamura,A., Kumanogoh,A.,
            Colonna,M. and Takai,T.
  TITLE     Signal adaptor DAP10 associates with MDL-1 and triggers
            osteoclastogenesis in cooperation with DAP12
  JOURNAL   Proc Natl Acad Sci U S A 106 (12), 4816-4821 (2009)
   PUBMED   19251634
REFERENCE   3  (bases 1 to 1394)
  AUTHORS   Aoki,N., Kimura,Y., Kimura,S., Nagato,T., Azumi,M., Kobayashi,H.,
            Sato,K. and Tateno,M.
  TITLE     Expression and functional role of MDL-1 (CLEC5A) in mouse myeloid
            lineage cells
  JOURNAL   J Leukoc Biol 85 (3), 508-517 (2009)
   PUBMED   19074552
REFERENCE   4  (bases 1 to 1394)
  AUTHORS   Chen,S.T., Lin,Y.L., Huang,M.T., Wu,M.F., Cheng,S.C., Lei,H.Y.,
            Lee,C.K., Chiou,T.W., Wong,C.H. and Hsieh,S.L.
  TITLE     CLEC5A is critical for dengue-virus-induced lethal disease
  JOURNAL   Nature 453 (7195), 672-676 (2008)
   PUBMED   18496526
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473959.1.
            
            [WARNING] On May 10, 2024 this sequence was replaced by
            NM_001109377.2.
            
            On Oct 4, 2007 this sequence version replaced XM_001054464.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMN06680412, SAMN06680413
                              [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1394
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q23"
     gene            1..1394
                     /gene="Clec5a"
                     /note="C-type lectin domain containing 5A"
                     /db_xref="GeneID:679787"
                     /db_xref="RGD:1584755"
     exon            1..140
                     /gene="Clec5a"
                     /inference="alignment:Splign:2.1.0"
     exon            141..239
                     /gene="Clec5a"
                     /inference="alignment:Splign:2.1.0"
     CDS             161..733
                     /gene="Clec5a"
                     /note="C-type lectin domain family 5, member A"
                     /codon_start=1
                     /product="C-type lectin domain family 5 member A"
                     /protein_id="NP_001102847.1"
                     /db_xref="GeneID:679787"
                     /db_xref="RGD:1584755"
                     /translation="MNWHMTISALIVVVIKVVGMTFFLLYFPQVFGKSSDGFIPTESY
                     GTTNVQNVSQIFGRSDESFVPTRSSGTACPNNWDFHQGRCFFFSTSESPWKNSRDYCA
                     TKGSTLAIVDTPKKLKFLQDRAGAENYFIGLIRQPGEKKWRWVNNSVFKGNVTNQEQN
                     FNCVTIGLTMTFDAASCDISYRWICETTPK"
     exon            240..314
                     /gene="Clec5a"
                     /inference="alignment:Splign:2.1.0"
     exon            315..374
                     /gene="Clec5a"
                     /inference="alignment:Splign:2.1.0"
     exon            375..511
                     /gene="Clec5a"
                     /inference="alignment:Splign:2.1.0"
     exon            512..618
                     /gene="Clec5a"
                     /inference="alignment:Splign:2.1.0"
     exon            619..1394
                     /gene="Clec5a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttgtgaata aggacattac ccattaccca agcaggagcg ggcattcaga agaaaaggaa
       61 ccctgcccac cacaccaaat attaacttat caaaaagact cctatctgta tgccaaccaa
      121 gactcacagg aagagatcag gtccctgaac ccccatcatc atgaactggc acatgaccat
      181 ctcagctctt atcgtagtag tgatcaaagt tgttggaatg accttttttc tgctgtactt
      241 cccacaggtt tttggcaaaa gtagtgatgg cttcatcccc acggagagct acggaaccac
      301 taatgtgcag aatgtctcac agatttttgg aagaagtgat gaaagcttcg ttcccacaag
      361 gagctctgga acagcctgtc ccaacaactg ggattttcac caaggaagat gttttttctt
      421 ctctacctct gaatcacctt ggaaaaacag cagggactat tgtgcaacaa aaggatccac
      481 actggcaatt gtcgacactc caaagaaact gaagtttctt caggacagag ctggggctga
      541 gaattacttt attggtttga tacgtcagcc tggagagaag aaatggcgct gggtcaacaa
      601 ctctgtgttc aagggcaatg ttaccaatca ggagcagaac ttcaactgcg tcactatagg
      661 tctgacaatg acatttgatg ctgcatcgtg tgacatcagc tatcgctgga tctgtgagac
      721 cactcccaaa tgatcagaga tctctacaag agtgaatatt tacagaacca gcaaaagaga
      781 ttcattgtga ctgaaaccag tccagaaaat atagagcatc aaagactgtg cccatcttcc
      841 taatgaatcc tcaaagtcaa catgcccttt cacaaacatc atcgcacagt aaaacttcct
      901 ttctgcacta agtattccca agactgagag gggattggac tctggctatc tccagacagg
      961 gccatgtttc tggagatgaa atccgtgtgg aagcgcagtc tgtctctgca gagctgagcc
     1021 ttttgactta tcagtagggt ttcctctgtt gacagaatcc atttcttttt tatcggttat
     1081 tttatttatt tacatttcaa atgttatccc ccttcccagt ttcccctcca taagccccct
     1141 atcccttcct ccatcctctc tgcctctatg aggatgcttc cccatccacc taccttcatc
     1201 cttagagaac atgcccacac cactgaggag aaactgctca tgaagcagat atgagaactg
     1261 ttaggaagca ctatgggcag aagactataa actcggcttc acaacctcct ccattcccag
     1321 aagactccca ttcccatact ctgtcttaga agcagaggcc ctcctgaatt gggggaggac
     1381 ttctgcagct tgac
//
