LOCUS       NM_001005896             714 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus C-type lectin domain family 4, member B2
            (Clec4b2), mRNA.
ACCESSION   NM_001005896 XM_579152
VERSION     NM_001005896.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Flornes,L.M., Bryceson,Y.T., Spurkland,A., Lorentzen,J.C.,
            Dissen,E. and Fossum,S.
  TITLE     Identification of lectin-like receptors expressed by antigen
            presenting cells and neutrophils and their mapping to a novel gene
            complex
  JOURNAL   Immunogenetics 56 (7), 506-517 (2004)
   PUBMED   15368084
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Kanazawa,N., Tashiro,K., Inaba,K. and Miyachi,Y.
  TITLE     Dendritic cell immunoactivating receptor, a novel C-type lectin
            immunoreceptor, acts as an activating receptor through association
            with Fc receptor gamma chain
  JOURNAL   J Biol Chem 278 (35), 32645-32652 (2003)
   PUBMED   12777403
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001005896.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY365132.1, AY581050.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680412, SAMN06680413
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-54                JAXUCZ010000004.1  158148434-158148487
            55-144              JAXUCZ010000004.1  158148995-158149084
            145-246             JAXUCZ010000004.1  158153960-158154061
            247-398             JAXUCZ010000004.1  158167862-158168013
            399-511             JAXUCZ010000004.1  158169813-158169925
            512-714             JAXUCZ010000004.1  158171731-158171933
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..714
                     /gene="Clec4b2"
                     /gene_synonym="Aplra1"
                     /note="C-type lectin domain family 4, member B2"
                     /db_xref="GeneID:450222"
                     /db_xref="RGD:1359354"
     exon            1..54
                     /gene="Clec4b2"
                     /gene_synonym="Aplra1"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..656
                     /gene="Clec4b2"
                     /gene_synonym="Aplra1"
                     /note="immunoreceptor; antigen presenting cell lectin-like
                     receptor A1"
                     /codon_start=1
                     /product="C-type lectin domain family 4 member C"
                     /protein_id="NP_001005896.2"
                     /db_xref="GeneID:450222"
                     /db_xref="RGD:1359354"
                     /translation="MMQEKLPQGKGGCWTLRLWSAAVISMLLLSTCFIMSCVVTYQFM
                     MEKPNRRLSELHTYNSNFTCCSDGTMVSGKVWSCCPKDWKSFGSHCYFTTDFVANWNE
                     SKEKCSHMGAHLLVIHSQEEQDFINGILDTRWGYFTGLSDQGQNQWQWIDQTPYNESV
                     TFWHEDEPNNDYEKCVEINHHKDIGWGWNDIVCSSEHKSICQVKKIYL"
     exon            55..144
                     /gene="Clec4b2"
                     /gene_synonym="Aplra1"
                     /inference="alignment:Splign:2.1.0"
     exon            145..246
                     /gene="Clec4b2"
                     /gene_synonym="Aplra1"
                     /inference="alignment:Splign:2.1.0"
     exon            247..398
                     /gene="Clec4b2"
                     /gene_synonym="Aplra1"
                     /inference="alignment:Splign:2.1.0"
     exon            399..511
                     /gene="Clec4b2"
                     /gene_synonym="Aplra1"
                     /inference="alignment:Splign:2.1.0"
     exon            512..714
                     /gene="Clec4b2"
                     /gene_synonym="Aplra1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccttgacctt ctgaatatat gcctcaataa tgatgcagga aaaactgccc caaggtaagg
       61 gaggatgctg gactctgaga ctctggtcag ctgctgtgat ttccatgtta ctcctcagca
      121 cctgcttcat catgagctgt gtggtgactt accaattcat gatggagaag cccaatagaa
      181 gactgtctga acttcacaca tataattcta atttcacctg ctgcagtgac gggactatgg
      241 tttcaggtaa agtctggagc tgttgcccaa aggattggaa gtcatttggc tcccactgct
      301 actttacaac tgacttcgtg gcaaattgga atgagagtaa ggagaaatgc tcccacatgg
      361 gtgctcatct gttggtgatc cacagccagg aagagcagga tttcatcaac gggatcctgg
      421 acactcgttg gggttatttt acaggacttt cagatcaagg ccagaatcaa tggcaatgga
      481 ttgatcagac accatacaat gagagtgtca cattctggca tgaagatgag cccaacaatg
      541 actatgaaaa atgtgttgaa ataaatcatc ataaggatat tggatggggc tggaatgata
      601 tcgtctgcag tagtgaacat aagtcaattt gtcaggtgaa gaaaatatac ttatgactta
      661 catgtcctcc atggctgtgg gattgcattg tgatctacca gtacacagat atct
//
