LOCUS       NM_001005880             790 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus C-type lectin domain family 4, member A2
            (Clec4a2), mRNA.
ACCESSION   NM_001005880 XM_232393
VERSION     NM_001005880.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Flornes LM, Bryceson YT, Spurkland A, Lorentzen JC, Dissen E and
            Fossum S.
  TITLE     Identification of lectin-like receptors expressed by antigen
            presenting cells and neutrophils and their mapping to a novel gene
            complex
  JOURNAL   Immunogenetics 56 (7), 506-517 (2004)
   PUBMED   15368084
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY397670.1.
            
            On Oct 22, 2004 this sequence version replaced XM_232393.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY397670.1, AY494061.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680412, SAMN06680416
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="PVG"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..790
                     /gene="Clec4a2"
                     /gene_synonym="Dcir2"
                     /note="C-type lectin domain family 4, member A2"
                     /db_xref="GeneID:297584"
                     /db_xref="RGD:1359163"
     exon            1..119
                     /gene="Clec4a2"
                     /gene_synonym="Dcir2"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..745
                     /gene="Clec4a2"
                     /gene_synonym="Dcir2"
                     /note="immunoreceptor; dendritic cell inhibitory receptor
                     2"
                     /codon_start=1
                     /product="C-type lectin domain family 4, member A2"
                     /protein_id="NP_001005880.1"
                     /db_xref="GeneID:297584"
                     /db_xref="RGD:1359163"
                     /translation="MDSEITYAEVRIKNESNSLGTYSECPAVPREKPTHHPSKPGSRS
                     LLFTSLMVFLLLLTIAFLGSFIIYFQKYSQLLEEKKALTDKTLNDLNCTKNVSLTEDK
                     ACSCCLKDWKSFGSYCYFTSTDSKATWDESKEKCSRMGAHLLVIHSQDEQDFINTILN
                     IGTDYFIGLSDHSENQWQWIDQTPYNESVTFWHKGEPNNKEEKCVVINHRDKWGWNDI
                     PCHDRHKSVCQVKKIHS"
     exon            120..236
                     /gene="Clec4a2"
                     /gene_synonym="Dcir2"
                     /inference="alignment:Splign:2.1.0"
     exon            237..338
                     /gene="Clec4a2"
                     /gene_synonym="Dcir2"
                     /inference="alignment:Splign:2.1.0"
     exon            339..493
                     /gene="Clec4a2"
                     /gene_synonym="Dcir2"
                     /inference="alignment:Splign:2.1.0"
     exon            494..606
                     /gene="Clec4a2"
                     /gene_synonym="Dcir2"
                     /inference="alignment:Splign:2.1.0"
     exon            607..790
                     /gene="Clec4a2"
                     /gene_synonym="Dcir2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggtgcgcct tctgagggag gcaggtcttt tcttgatatg gattcagaaa tcacttatgc
       61 agaagtgagg atcaagaatg aatccaattc cttgggcacc tactcagaat gtcctgcagt
      121 tcccagagag aaacctaccc atcatccaag taagccaggt tcccgctcac tgctttttac
      181 atccttgatg gtatttctcc tgctgttgac aatcgcattc ttaggttctt ttatcattta
      241 ttttcaaaag tactctcaac ttcttgaaga aaaaaaagct ttaactgata aaactctcaa
      301 tgatttgaac tgcacaaaaa atgtttcact cacagaagat aaagcctgta gctgttgcct
      361 aaaggattgg aagtcatttg gctcctactg ctactttact tcaactgact cgaaggcaac
      421 ttgggatgag agtaaggaga agtgctcccg catgggtgct catctgttgg tgatccacag
      481 tcaggatgag caggatttta tcaacacgat cctgaacatt ggtactgatt attttatagg
      541 actttcagac cacagcgaaa atcaatggca atggattgat cagacaccat acaacgagag
      601 tgtcacattc tggcataaag gtgagcccaa caacaaggaa gaaaaatgtg ttgtaataaa
      661 ccatcgtgat aaatggggct ggaatgatat cccttgccat gatagacata agtcagtttg
      721 tcaggtgaag aaaatacact cctgaatcac acattctcca tgggtatgcg acttcactgt
      781 tatctaccat
//
