LOCUS       NM_001005890            1230 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus C-type lectin domain family 4, member A1
            (Clec4a1), mRNA.
ACCESSION   NM_001005890 XM_342751
VERSION     NM_001005890.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1230)
  AUTHORS   Flornes LM, Bryceson YT, Spurkland A, Lorentzen JC, Dissen E and
            Fossum S.
  TITLE     Identification of lectin-like receptors expressed by antigen
            presenting cells and neutrophils and their mapping to a novel gene
            complex
  JOURNAL   Immunogenetics 56 (7), 506-517 (2004)
   PUBMED   15368084
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC098830.1.
            
            On Jul 13, 2005 this sequence version replaced NM_001005890.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098830.1, AY397672.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1230
                     /gene="Clec4a1"
                     /gene_synonym="Dcir4"
                     /note="C-type lectin domain family 4, member A1"
                     /db_xref="GeneID:362430"
                     /db_xref="RGD:1359109"
     exon            1..214
                     /gene="Clec4a1"
                     /gene_synonym="Dcir4"
                     /inference="alignment:Splign:2.1.0"
     CDS             115..846
                     /gene="Clec4a1"
                     /gene_synonym="Dcir4"
                     /note="dendritic cell immunoreceptor, C-type lectin;
                     dendritic cell inhibitory receptor 4"
                     /codon_start=1
                     /product="C-type lectin domain family 4, member A1"
                     /protein_id="NP_001005890.1"
                     /db_xref="GeneID:362430"
                     /db_xref="RGD:1359109"
                     /translation="MALPNIYTDVNFKNQPVSSGTVSDSSSCTISSSALPKKTTVHKS
                     NPGFPTLLLALLIFFLVLAILSSVGLTTLFHMYSDLLEEKNTLQQLNHAKLHCIKNHS
                     SVEDKVWSCCPKNWKPFGSHCYFTSRDSASWSDSEEKCSHRGAHLLVIHSQEEQDFIT
                     DTLNPRAHYYVGLSDTEGHGKWQWVDQTPFNQNATSWHADEPSGNKGFCVVLSYHPNL
                     KGWGWSVAPCDGYHRLVCKMRQLYV"
     exon            215..328
                     /gene="Clec4a1"
                     /gene_synonym="Dcir4"
                     /inference="alignment:Splign:2.1.0"
     exon            329..430
                     /gene="Clec4a1"
                     /gene_synonym="Dcir4"
                     /inference="alignment:Splign:2.1.0"
     exon            431..582
                     /gene="Clec4a1"
                     /gene_synonym="Dcir4"
                     /inference="alignment:Splign:2.1.0"
     exon            583..698
                     /gene="Clec4a1"
                     /gene_synonym="Dcir4"
                     /inference="alignment:Splign:2.1.0"
     exon            699..1200
                     /gene="Clec4a1"
                     /gene_synonym="Dcir4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttctgcacc ttctccttga tgctggatta atcctcacca catttatttc ttgtttatat
       61 aaaacatact aaggctgaca caggttttct gaagaaagca ggactcttct caatatggca
      121 ttaccaaaca tttatactga cgtgaacttc aaaaatcaac ctgtttcctc aggcaccgtc
      181 tcagactcat cttcatgcac catctcatct tcagcgctcc caaagaagac caccgttcac
      241 aaaagtaatc ctggctttcc cacactgctt cttgccctgt tgatattttt cctggtgtta
      301 gcaatcttat cctctgttgg tctgaccact ttgtttcata tgtattctga tctccttgaa
      361 gaaaaaaata ctctacaaca actgaaccac gcaaaattgc attgtataaa aaaccattcg
      421 tccgtggaag acaaagtctg gagctgctgt ccaaagaatt ggaagccatt tggttcccac
      481 tgctacttca cttccaggga ctctgcatcc tggagtgaca gtgaggagaa gtgctcccac
      541 aggggtgctc atctgttggt gatccacagc caggaagagc aggatttcat cactgatact
      601 ctgaaccctc gtgctcatta ttatgtgggg ctgtcggata cagagggcca tggaaaatgg
      661 cagtgggttg atcagacacc attcaatcag aatgccacat cctggcacgc agacgaaccc
      721 agtggcaaca agggattttg tgttgtgcta agttaccatc caaaccttaa aggatggggc
      781 tggagtgtcg ccccttgtga cggttatcac aggctggttt gcaagatgag gcagctctac
      841 gtatgaatga agaattctct acagacacat ggactggaat ccataattac agagacagct
      901 aggaagttct tcatttagac ttctcaggga tcaaacaagg aattggaatt gtaccagcag
      961 gccagcttct tagacaatcc ccctcccccc agctgtctct gtgtctgtct ctgtctctct
     1021 gtctttctct gtctgtctgt ctctctgtct ctctctctct gtgtctttgg agtcagggtc
     1081 tcactatgta cctctcgctg tcctagaact cactatatag ccaagcctgg cttcaaattc
     1141 ccagagatcc tcttgccttt gtttcccgag tgctggaatt aaaggcatgt gccaccacca
     1201 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
