LOCUS       NM_001005899             831 bp    mRNA    linear   ROD 02-APR-2024
DEFINITION  Rattus norvegicus C-type lectin domain family 4, member A (Clec4a),
            mRNA.
ACCESSION   NM_001005899 XM_579154
VERSION     NM_001005899.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Flornes,L.M., Bryceson,Y.T., Spurkland,A., Lorentzen,J.C.,
            Dissen,E. and Fossum,S.
  TITLE     Identification of lectin-like receptors expressed by antigen
            presenting cells and neutrophils and their mapping to a novel gene
            complex
  JOURNAL   Immunogenetics 56 (7), 506-517 (2004)
   PUBMED   15368084
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY581051.1.
            
            On May 23, 2007 this sequence version replaced NM_001005899.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY581051.1, AY494060.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="LEW"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..831
                     /gene="Clec4a"
                     /gene_synonym="Clecsf6; Dcir1"
                     /note="C-type lectin domain family 4, member A"
                     /db_xref="GeneID:474143"
                     /db_xref="RGD:1359662"
     exon            1..96
                     /gene="Clec4a"
                     /gene_synonym="Clecsf6; Dcir1"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..737
                     /gene="Clec4a"
                     /gene_synonym="Clecsf6; Dcir1"
                     /note="dendritic cell inhibitory receptor 1; C-type lectin
                     superfamily member 6; C-type (calcium dependent,
                     carbohydrate recognition domain) lectin, superfamily
                     member 6"
                     /codon_start=1
                     /product="C-type lectin domain family 4 member A"
                     /protein_id="NP_001005899.2"
                     /db_xref="GeneID:474143"
                     /db_xref="RGD:1359662"
                     /translation="MASEITYAEVRIKNESNSSVTYSGSPAAPREKPTRHLSKPGSLL
                     VPFTSLMVLLLLLAITFLVAFIIYFQKYSQFLEEKKAIKGITHKELNCIKNVLLMEEK
                     SWSCCPKNWKPFGSHCYWVTKHTSTYSKASWNESEKNCFSMGAHLLVIHSKEEQDFIT
                     GILNRDAAYFIGLWDSGHRQWQWVSQTPYNASATFWHKGEPSSDDEKCVIINHLNSGW
                     GWNDIPCSGKQQSVCQMKKIQL"
     exon            97..213
                     /gene="Clec4a"
                     /gene_synonym="Clecsf6; Dcir1"
                     /inference="alignment:Splign:2.1.0"
     exon            214..315
                     /gene="Clec4a"
                     /gene_synonym="Clecsf6; Dcir1"
                     /inference="alignment:Splign:2.1.0"
     exon            316..482
                     /gene="Clec4a"
                     /gene_synonym="Clecsf6; Dcir1"
                     /inference="alignment:Splign:2.1.0"
     exon            483..595
                     /gene="Clec4a"
                     /gene_synonym="Clecsf6; Dcir1"
                     /inference="alignment:Splign:2.1.0"
     exon            596..831
                     /gene="Clec4a"
                     /gene_synonym="Clecsf6; Dcir1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attcttttct tgatatggct tcagaaatca cttatgcaga agtaaggatc aagaatgaat
       61 ccaactcctc ggtcacctac tcaggatctc ctgcagctcc cagagagaaa cctacccgtc
      121 atctaagtaa gcctggttcc cttttggtgc cttttacatc ccttatggta cttctcctgc
      181 tgctagcaat cacattctta gttgctttca tcatttattt tcagaagtac tctcaatttc
      241 ttgaagaaaa aaaagctata aaaggtataa ctcacaaaga attgaactgc ataaaaaatg
      301 ttttgctcat ggaagaaaaa agctggagct gttgcccaaa gaattggaag ccatttggtt
      361 cccactgcta ctgggttacc aaacatactt caacttactc aaaagcatct tggaacgaga
      421 gtgagaagaa ctgcttcagc atgggtgctc atctcctagt gatccatagc aaggaagaac
      481 aggacttcat cactgggatc ctgaaccgtg atgctgctta ttttataggg ctctgggatt
      541 caggtcatcg acaatggcaa tgggtttctc agacaccata caatgcgagt gccacattct
      601 ggcacaaagg tgagcccagc agtgacgatg aaaagtgtgt tataataaat catcttaatt
      661 ctggatgggg ctggaatgat atcccttgca gtggtaaaca gcagtcagtt tgtcagatga
      721 agaaaataca gttatgaatc atacattctc catgggtatg tgatttcatt gttgttcact
      781 attacacaga cacctgggaa attatacaaa tggaagagat ggccacagaa t
//
