LOCUS       NM_001108899             623 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus C-type lectin domain family 3, member A (Clec3a),
            mRNA.
ACCESSION   NM_001108899 XM_001078120 XM_344773
VERSION     NM_001108899.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473972.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001078120.1, XM_344773.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FM099579.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760396, SAMN06621351
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..623
                     /gene="Clec3a"
                     /gene_synonym="Clecsf1"
                     /note="C-type lectin domain family 3, member A"
                     /db_xref="GeneID:365009"
                     /db_xref="RGD:1306295"
     CDS             1..591
                     /gene="Clec3a"
                     /gene_synonym="Clecsf1"
                     /note="C-type (calcium dependent, carbohydrate-recognition
                     domain) lectin, superfamily member 1 (cartilage-derived)"
                     /codon_start=1
                     /product="C-type lectin domain family 3 member A
                     precursor"
                     /protein_id="NP_001102369.1"
                     /db_xref="GeneID:365009"
                     /db_xref="RGD:1306295"
                     /translation="MVKNRLVICILVASLLLDQISSYPSRAKARKHSKRRVKEKDGDL
                     KSQVEKLWREVNALKEMQALQTVCLRGTKVHKKCYLASEGLKHYHEANEDCISKGGTL
                     VVPRNSDEINALRDYSKRSLPGVNDFWLGINDMVTEGKFLDVHGFAVSFLNWDRAQPS
                     GGKRENCVLFSQSAQGKWSDEACRSSKRYICEFIIP"
     exon            1..115
                     /gene="Clec3a"
                     /gene_synonym="Clecsf1"
                     /inference="alignment:Splign:2.1.0"
     exon            116..199
                     /gene="Clec3a"
                     /gene_synonym="Clecsf1"
                     /inference="alignment:Splign:2.1.0"
     exon            200..623
                     /gene="Clec3a"
                     /gene_synonym="Clecsf1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggtaaaga acagacttgt catttgtatc ctggtggcca gcttactcct ggaccagatc
       61 agcagctacc catcccgagc gaaagccagg aagcacagca aacgccgagt gaaagaaaag
      121 gatggtgacc tgaagtctca agttgaaaag ctgtggcggg aagtcaatgc cttgaaggaa
      181 atgcaagctc tgcagacagt ctgtcttcga ggcaccaaag ttcataagaa atgctacctt
      241 gcttcggaag gcctcaagca ttaccacgaa gccaacgaag actgcatttc caagggagga
      301 accctggttg tccccaggaa ttccgacgaa atcaatgccc tccgagacta cagtaagagg
      361 agcctgccag gtgtcaatga cttttggcta ggcataaatg acatggtcac agaaggcaag
      421 ttcctcgacg tccacggatt cgccgtctcc ttcctcaact gggaccgtgc ccagccaagt
      481 ggtggcaagc gggaaaactg tgtcctgttc tcccagtcag ctcaggggaa gtggagcgat
      541 gaggcttgtc gcagtagcaa gcggtacata tgtgagttta tcatccctta agaagcccct
      601 cctcagcatc ctcccaagga aga
//
