LOCUS       NM_001044233            1430 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus C-type lectin domain family 2, member L (Clec2l),
            mRNA.
ACCESSION   NM_001044233 XM_001069608 XM_231622
VERSION     NM_001044233.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1430)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Feb 21, 2008 this sequence version replaced NM_001044233.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.22574.1,
                                           SRR22582416.1621219.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-181               JAXUCZ010000004.1  68365160-68365340
            182-256             JAXUCZ010000004.1  68374285-68374359
            257-423             JAXUCZ010000004.1  68377870-68378036
            424-524             JAXUCZ010000004.1  68378485-68378585
            525-1430            JAXUCZ010000004.1  68380526-68381431
FEATURES             Location/Qualifiers
     source          1..1430
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q23"
     gene            1..1430
                     /gene="Clec2l"
                     /gene_synonym="RGD1565373"
                     /note="C-type lectin domain family 2, member L"
                     /db_xref="GeneID:296985"
                     /db_xref="RGD:1565373"
     CDS             1..636
                     /gene="Clec2l"
                     /gene_synonym="RGD1565373"
                     /note="CD69-like protein; C-type lectin domain family,
                     member L"
                     /codon_start=1
                     /product="C-type lectin domain family 2 member L"
                     /protein_id="NP_001037698.2"
                     /db_xref="GeneID:296985"
                     /db_xref="RGD:1565373"
                     /translation="MEPAREPPARARPPPPAARPAPAAPRPRSPAEAEARGPEGLLRR
                     SGSGYEGSTSWKAALEDTTTRLLLGAIAVLLFAILVVMSILASKGCIKCETPCPEDWL
                     LYGRKCYYFSEEPRDWNTGRQYCHTHEAALAVIQSQKELEFMFKFTRREPWIGLRRVG
                     DDFHWVNGDPFDPDTFTISGTGECVFVEPTRLVSTECLTTRPWVCSKMAYT"
     exon            1..181
                     /gene="Clec2l"
                     /gene_synonym="RGD1565373"
                     /inference="alignment:Splign:2.1.0"
     exon            182..256
                     /gene="Clec2l"
                     /gene_synonym="RGD1565373"
                     /inference="alignment:Splign:2.1.0"
     exon            257..423
                     /gene="Clec2l"
                     /gene_synonym="RGD1565373"
                     /inference="alignment:Splign:2.1.0"
     exon            424..524
                     /gene="Clec2l"
                     /gene_synonym="RGD1565373"
                     /inference="alignment:Splign:2.1.0"
     exon            525..1430
                     /gene="Clec2l"
                     /gene_synonym="RGD1565373"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggagccgg ccagagagcc ccccgcacgc gctcgcccgc cgcccccggc cgctcgcccc
       61 gcgcccgctg cgcccaggcc acgctctcca gccgaggcag aggcccgagg cccagagggg
      121 ctgctgaggc gatccgggtc tggctatgag ggcagcacca gctggaaggc ggccttggag
      181 gacaccacca cacgccttct gctgggagcc attgcagtcc ttctgtttgc cattctggtg
      241 gtgatgagca tcctggcttc caagggctgc atcaagtgtg agacgccttg cccagaggac
      301 tggctgctct acggaaggaa atgctactac ttctccgagg agcctagaga ctggaataca
      361 ggacggcagt actgccatac ccacgaggcc gcgctggctg tgatccagag ccagaaagaa
      421 ctggaattta tgttcaagtt cacacggagg gagccctgga tcggcctgcg cagagttggg
      481 gacgacttcc actgggtcaa tggggacccg tttgacccag acacattcac catctcgggt
      541 acgggcgagt gcgtctttgt ggagcccacc aggctggtgt caacagagtg tctgacgacc
      601 cgtccctggg tgtgcagcaa gatggcctac acgtgatgtg gctcaggctg gaggtggccc
      661 ctgtgcctag gcccaagggc aatgtccgtc ccacaacctg cttctaacag gagccgccac
      721 cctctctaaa tggaagtagt ggggagggtg gcctctgcct gtcccctttc aggctccaga
      781 gctctgcaag gcctctgcct gtcccctttc aggctccaga gctctgcaag gcctctgcct
      841 gtcccctttc aggctccaga gctctgcaag gcctctgcct gtcccctttc aggctccaga
      901 gctctgcaag gcctctgcct gtcccctttc aggctccaga gctctgcaag gcctctgcct
      961 gtcccctttc aggctccaga gctctgcaag gccttggttt ctttatcccc aggcaggtcc
     1021 tgtggcctag cagttatatc tcatatgcta agtagtgtag acatcttgcc ccatacacac
     1081 aagcacacac gtgtacacgc atgtacacac acaacacaca tgcaggctct tcttagcagg
     1141 tcacccttcc ttggctctgc ctagaacctt ccccactgca gccctggtgc ttctgggcag
     1201 atgggggctg acatgggttg tctgactttt ggcccagcct cctgccctcc ccagtggctt
     1261 ctctgagaag ctgggtgagg caggcaggaa cagcttcccc catgcgttgg agagaacagc
     1321 ccggagctgg aggctgctct atccctgcct tcccagggtc ctcaggcagg gcccctgctg
     1381 tgctgtggtg ctgtcctatc ggtcactaat ggaataaagg ctgcgtctct
//
