LOCUS       XM_008763345            2174 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus C-type lectin domain family 2, member
            H (Clec2h), mRNA.
ACCESSION   XM_008763345
VERSION     XM_008763345.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008763345.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2174
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2174
                     /gene="Clec2h"
                     /note="C-type lectin domain family 2, member H; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 16 Proteins, and 84% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:312745"
                     /db_xref="RGD:1306865"
     CDS             315..1013
                     /gene="Clec2h"
                     /codon_start=1
                     /product="C-type lectin domain family 2 member E"
                     /protein_id="XP_008761567.2"
                     /db_xref="GeneID:312745"
                     /db_xref="RGD:1306865"
                     /translation="MSNLLLNSVLPLSSKMSAVKIEEASVDKLKIHLTATACLQEEDK
                     GKVLQGKLLRSISPESRVKLHCCYGVVIVVLTVAVVALSVALSVRNKIPVMENCEPCS
                     ATCPSGWIGFGSKCFYFSEDVGNWTFSQSSCMALDSHLALFDSLEELIFLKRYKGPSD
                     HWIGLHRASTKHPWIWADDTEYSNLVLIRGGGQCGFLSDNGISSGRDYTHRKWICNKS
                     SSYTSQYPLFVNPS"
ORIGIN      
        1 tccccaatta ataacagcat ctttcatcaa agcaatattt ttcttaaaga atcagtgata
       61 agtaaggagc attttccaat tctcaggcat ttgtctattt tatttattgc gtttaaagtt
      121 cacataattt catgtcacaa tcttctacct tgtgattcta tttcctcaac aaacaaaaaa
      181 ctatgtgctg acaggtgata tgttcaggac tgagaaggag tgactaatga atcacccttc
      241 ttaactgaac tcataaagtg tttatcagga agcacataca atatataagg ctccctctcc
      301 ctcttcacag tttcatgtca aatctcctcc tgaattccgt tcttcctctc agttcaaaaa
      361 tgagtgctgt aaagattgaa gaagcttccg tggacaagct gaagatacac ctcactgcta
      421 ctgcctgcct gcaggaggaa gataaaggta aagtactcca aggaaaactt ctcagaagca
      481 tctcccctga gtctcgtgtt aagcttcact gctgctatgg agtagtgatc gtggtcctca
      541 ctgtagctgt agttgctctt tctgttgctt tgtcagtgag aaacaaaatt ccagtcatgg
      601 agaactgtga accttgctct gccacatgcc caagtggctg gattggattt ggaagtaaat
      661 gcttttattt ttctgaagat gtgggaaact ggacattcag ccagtcctcg tgcatggcac
      721 tagattccca tctagctctg tttgacagcc tggaggagct gatttttctg aagagataca
      781 agggaccttc tgaccactgg atcggcctgc atagagcgtc aacaaagcac ccttggatat
      841 gggcagatga cactgagtat agcaacttgg ttctcatccg aggaggagga caatgtggct
      901 tcctgagtga caatgggatc agcagtggca gggactatac acataggaag tggatttgta
      961 acaagtccag cagctacacc tcacagtacc cactatttgt aaatccaagc tagggaatgt
     1021 accaagggaa agcatgtgtg agaaacagat gctctgtgat ctgttatcta cagttgctgc
     1081 tctactcagg acctaccaaa gccatgaaca aaatccatca ataaccacat tgacaacaaa
     1141 gatgaaaact agcttagagg atcataggaa tactacataa attttggata aatgattcta
     1201 aattaaatcg gtatttgggt atgagttagt actgatatct aaaactaaag tataaacaaa
     1261 actgtgttgg tgagctccat tttatcatca ggaatgaaca ttttcattgg tccttgctat
     1321 aaattcaggg gatatgaacc catgaaaatt attagtcaca agaaatatga taattggcct
     1381 gtggcttcca aatattatag taagtatggt catcattctt tttaaaaaat tcaataacaa
     1441 atatggaggg aaatctaaac cagatggaag gcaatgctgt atactctgtc atttaatagc
     1501 attgtcaatt atttttatac tttatttacg agttttttaa aattgaaaca gactaagaat
     1561 atgatacaag caaatgtcat tttattttcc aaatttaaac ttttttgaga attccatacg
     1621 agtgtatgac atttgaattt tattctttac taggttcttt tcagatcagg ataaaattgg
     1681 ttactgaacc tccttcaaag catttgatcc ctaatcttgt aatcatttac acacacataa
     1741 gttttaagaa aaaatattaa caatatttgg ataatgtgct acactgtact gatgagtccc
     1801 aaaaaggacg aaataacagg tcagttaaca ctttcgtctt actttatctt tggattaaac
     1861 cttctcacac atgctaggca aacactatcc taccgatatt acactatccc tttttataaa
     1921 tttttatttc ataacaagat cattctgtaa gccccagatg gctaggatta cagctgtgta
     1981 tcaccacaga ggccttgctc tattaacgtt ttagttcatg gagttcaggg acaggactat
     2041 gataccaatg gtaaaggcac caactactaa gactgataac ttgagttcaa catctggatt
     2101 agcatgttgg gagcataaaa tcgtccacag tatattgttt gtaaacttca aacttgcact
     2161 gtacccattc acaa
//
