LOCUS       NM_001048075            1772 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus C-type lectin domain family 2, member G (Clec2g),
            mRNA.
ACCESSION   NM_001048075 XM_001067661 XM_342769
VERSION     NM_001048075.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Kveberg,L., Dai,K.Z., Westgaard,I.H., Daws,M.R., Fossum,S.,
            Naper,C. and Vaage,J.T.
  TITLE     Two major groups of rat NKR-P1 receptors can be distinguished based
            on chromosomal localization, phylogenetic analysis and Clr ligand
            binding
  JOURNAL   Eur J Immunol 39 (2), 541-551 (2009)
   PUBMED   19130483
REFERENCE   2  (bases 1 to 1772)
  AUTHORS   Voigt,S., Mesci,A., Ettinger,J., Fine,J.H., Chen,P., Chou,W. and
            Carlyle,J.R.
  TITLE     Cytomegalovirus evasion of innate immunity by subversion of the
            NKR-P1B:Clr-b missing-self axis
  JOURNAL   Immunity 26 (5), 617-627 (2007)
   PUBMED   17462921
  REMARK    GeneRIF: existence of lectin-like genes in several poxviruses
            suggests that this may represent a common theme for viral evasion
            of innate immunity
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Oct 7, 2022 this sequence version replaced NM_001048075.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.1379374.1,
                                           SRR26360176.1184401.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-124               JAXUCZ010000004.1  164303893-164304016
            125-250             JAXUCZ010000004.1  164309657-164309782
            251-429             JAXUCZ010000004.1  164310697-164310875
            430-536             JAXUCZ010000004.1  164311440-164311546
            537-1772            JAXUCZ010000004.1  164312502-164313737
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1772
                     /gene="Clec2g"
                     /gene_synonym="CLEC2D11; Clr-b; Clr11; Clrb; RGD1563148"
                     /note="C-type lectin domain family 2, member G"
                     /db_xref="GeneID:362447"
                     /db_xref="RGD:1563148"
     exon            1..124
                     /gene="Clec2g"
                     /gene_synonym="CLEC2D11; Clr-b; Clr11; Clrb; RGD1563148"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..681
                     /gene="Clec2g"
                     /gene_synonym="CLEC2D11; Clr-b; Clr11; Clrb; RGD1563148"
                     /note="C-type lectin domain family 2, member d11; C-type
                     lectin-related protein 11; osteoclast inhibitory lectin;
                     C-type lectin-related protein B; lectin-like transmembrane
                     protein; Ocil/Clrb-like protein"
                     /codon_start=1
                     /product="C-type lectin domain family 2 member D11"
                     /protein_id="NP_001041540.1"
                     /db_xref="GeneID:362447"
                     /db_xref="RGD:1563148"
                     /translation="MSAKKASQPMLNTTGSLQEGEMGKMFHGKCLRIVSPESPAKLYC
                     CYGVIMVLSVAVVALSVALSVKMTPQISTINTYAACPRNWIGVGNKCFYFSEYASNWT
                     FSQTFCKAQEAELARFDTEEELNFLSRYKGSFDYWIGLHRESSEHPWKWTDNTQYNYS
                     LSIRGVERYAYLNDIGISSARVYADKRWSCSKLNSYSLQCKTPFSPM"
     exon            125..250
                     /gene="Clec2g"
                     /gene_synonym="CLEC2D11; Clr-b; Clr11; Clrb; RGD1563148"
                     /inference="alignment:Splign:2.1.0"
     exon            251..429
                     /gene="Clec2g"
                     /gene_synonym="CLEC2D11; Clr-b; Clr11; Clrb; RGD1563148"
                     /inference="alignment:Splign:2.1.0"
     exon            430..536
                     /gene="Clec2g"
                     /gene_synonym="CLEC2D11; Clr-b; Clr11; Clrb; RGD1563148"
                     /inference="alignment:Splign:2.1.0"
     exon            537..1772
                     /gene="Clec2g"
                     /gene_synonym="CLEC2D11; Clr-b; Clr11; Clrb; RGD1563148"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctctcagctt tccagtttca accctcctgt agcagaaccc agcttctcag ctctgagatg
       61 agtgccaaaa aggcttccca acctatgctc aataccacag gcagcctgca ggagggagaa
      121 atgggtaaaa tgttccatgg gaaatgtctc agaatcgtct cccccgaatc tcctgctaag
      181 ctttactgct gctatggagt gatcatggtc ctcagtgtag ctgtagttgc tctttctgtt
      241 gctttgtcag taaaaatgac accacagatc tcaaccataa atacctacgc tgcttgcccg
      301 agaaactgga ttggagttgg aaataaatgt ttttattttt ctgaatatgc aagtaactgg
      361 acattcagcc agaccttctg caaggcacaa gaggccgagc tagcacgatt tgacaccgag
      421 gaggagctga atttcttaag cagatacaaa gggagttttg attactggat cggcctgcac
      481 agagagtcct cagagcaccc ttggaagtgg acagacaaca ctcagtataa ctactcgctt
      541 tccatccggg gagtggaaag atatgcctac ctgaacgaca tcgggatcag cagtgccagg
      601 gtctatgcag acaaaagatg gagctgtagc aaacttaaca gctatagcct ccaatgcaaa
      661 actccttttt ctcctatgta gcttttgatc aagagagatg ctttttagtc tgctatctat
      721 gggtgctact ctttcccctg tggtcccacc ctgctaccaa aacaggtgaa gaatatttct
      781 taacatcaca aatggaaacc atcttggaga gctacaaata cctggaattt cgagaacgta
      841 gatgagttta aaatagatgt ggtcacacat acattaagcc taaagcgcaa ctaatgttag
      901 tgaaccccac tttcgcggta ggaaggcttt ttgtgtgcag acaagtcctt cttttgaatt
      961 tatgaggcca caaaaatgag tcccgcaatg tgcatgtggc ctttaacaat gaaagcagag
     1021 tgactgggat agtgacaagt atctgtaatc ccaggattgc aagggttgaa atgggagggt
     1081 cacaggctca ctagtggaga ctaaaagcat gggaatgctt taacaaggaa agggaagatg
     1141 agaatccatc tgtagcagcc cataatttgg agaaacacat tatacctgct tttcaaaatt
     1201 caaaccaaca tgcagaagaa ttttaaaagt gtgaaaattt aaggttcact ttatactctg
     1261 caatttaaaa catgaggcat attggcgaaa tgtttcttta ccttagtttg caatattcct
     1321 gtttccaact atactgttct aagtataatt ataattactt aattattctg ctctaaggat
     1381 aatacatttt ataaacaaat gtccttttaa ttttaccatt ttattggact tatttccatc
     1441 aaatgtgagt taaatcccta agcatttaat atttaatttt acactagtgt gtacattatt
     1501 gggtctttaa aaaatattta aaatcttaca gagttagcta ccccatactg atgagtccca
     1561 aaaaggacga aatagcagac taaagagcat ctcttgatct ctctatcctt tcttctctct
     1621 cttgttcttt ttaaagactc tatactaact tgatatgtca agggggagtt gatatccatg
     1681 ggaagcctcc aggaatctga gaagaaaggg tagggagatg ggggagggag gagggaaggg
     1741 aaatttaaaa gaataaaatg aaaatacatt ta
//
