LOCUS       NM_001177689            2115 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus C-type lectin domain family 2, member E (Clec2e),
            mRNA.
ACCESSION   NM_001177689 XM_001072272 XM_002726458
VERSION     NM_001177689.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2115)
  AUTHORS   Kveberg,L., Dai,K.Z., Westgaard,I.H., Daws,M.R., Fossum,S.,
            Naper,C. and Vaage,J.T.
  TITLE     Two major groups of rat NKR-P1 receptors can be distinguished based
            on chromosomal localization, phylogenetic analysis and Clr ligand
            binding
  JOURNAL   Eur J Immunol 39 (2), 541-551 (2009)
   PUBMED   19130483
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Nov 1, 2022 this sequence version replaced NM_001177689.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.20728.1, FJ404473.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-133               JAXUCZ010000004.1  164226508-164226640 c
            134-253             JAXUCZ010000004.1  164225749-164225868 c
            254-438             JAXUCZ010000004.1  164222876-164223060 c
            439-545             JAXUCZ010000004.1  164222247-164222353 c
            546-2115            JAXUCZ010000004.1  164219885-164221454 c
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..2115
                     /gene="Clec2e"
                     /gene_synonym="Clec2d10"
                     /note="C-type lectin domain family 2, member E"
                     /db_xref="GeneID:689853"
                     /db_xref="RGD:1587527"
     exon            1..133
                     /gene="Clec2e"
                     /gene_synonym="Clec2d10"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..690
                     /gene="Clec2e"
                     /gene_synonym="Clec2d10"
                     /note="C-type lectin domain family 2 member d10"
                     /codon_start=1
                     /product="C-type lectin domain family 2 member E"
                     /protein_id="NP_001171160.2"
                     /db_xref="GeneID:689853"
                     /db_xref="RGD:1587527"
                     /translation="MGAAKIEEACLGMLKIDLTAADCPQEGEMGKKLQAKCLSVVSPA
                     KLLCCYRVVIVVLIVAVVALSVALSVRKEKPVMESCEPCYATCPSGWIGFGSKCFYFS
                     EDVGNWTFSQSSCMALDSHLALFDSLEELNFLKRYKGPSNHWIGLHRASTEHPWIWTD
                     NTKYNNMVLTRGGGECAYLSESGIRSGRGYTRRKWICNKPNSYTVQCPLVVDPG"
     exon            134..253
                     /gene="Clec2e"
                     /gene_synonym="Clec2d10"
                     /inference="alignment:Splign:2.1.0"
     exon            254..438
                     /gene="Clec2e"
                     /gene_synonym="Clec2d10"
                     /inference="alignment:Splign:2.1.0"
     exon            439..545
                     /gene="Clec2e"
                     /gene_synonym="Clec2d10"
                     /inference="alignment:Splign:2.1.0"
     exon            546..2115
                     /gene="Clec2e"
                     /gene_synonym="Clec2d10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttcctgaat tcagttgagt ctcagctctt cctctcagct cagacatggg tgctgcaaag
       61 attgaagagg cttgcctagg catgctgaag atagacctca ctgctgcaga ctgcccgcag
      121 gagggagaaa tgggtaaaaa acttcaagca aaatgtctca gcgtcgtttc ccctgctaag
      181 cttctctgct gctatcgagt agtgatcgtg gtcctcattg tagctgtagt tgctctttct
      241 gttgctttgt cagtgagaaa ggaaaaaccg gtcatggaga gctgtgaacc ttgctatgcc
      301 acatgcccaa gtggctggat tggatttgga agtaaatgct tttatttttc tgaagacgtg
      361 ggaaactgga cattcagcca gtcctcgtgc atggcattag attcccatct agctctgttt
      421 gacagcctgg aggagctgaa ttttctgaag agatacaaag ggccttctaa ccactggatt
      481 ggcctgcacc gagcatcaac agagcatcct tggatatgga cggacaatac taagtataac
      541 aacatggttc tcacacgagg aggaggagaa tgtgcctacc tgagtgaaag tgggatccgc
      601 agtggccggg gctacacacg taggaagtgg atttgtaaca agcccaacag ctacactgta
      661 cagtgcccac tagttgtaga tccaggctag ggaatgtgcc aaagcatgcg tgagaaacag
      721 atgctctgtg acctgttatc tacagttgct gctctactca ggatctacca aagccattat
      781 caaaatccat caataatcac attgacagca aagatgaaaa ctagcttaga gggtcataga
      841 tacactacat aaattttgga tagataattg taaatcaaat aggtgtttgg gtatgagtta
      901 ctactgaaat ctaaaaggat aggataaaca aacctgtgtt attgacctcc attttatgat
      961 cacatatgaa ctgttttcat tggtccttgc tatgaattca ggggcactaa aaatgtgggt
     1021 gactgaaacc atggaattga ttctgttatc acaggaaaga tgataattgt tctgtggtct
     1081 ccaaatatta tagtaaatgc ggccattatt ctcttcataa attcaatgac caatctgaag
     1141 gcagatctaa acaggcttaa aaaccatgct gtacactgag atttaataac attgtcaaat
     1201 atttttacac tttccttatc agagttttaa aaattgaaac agactaagaa tatgatacaa
     1261 gcaaatgtca ttttattttc caaatttaac ttttttgaga atttcataca tatgcatgac
     1321 atttgaattt tattctttac taggttgttt tcagaccaga agacagttga ttactgaatc
     1381 cccttcaaag catgtgatgc ctaatcttgc aatcatttac acactgttta atttttagga
     1441 caaaatattt gaaatttttg gatgtgctat actgtactga tgagtcccaa aaaggacgaa
     1501 ataacaggtc acaggcaatt cttctgttaa ctctttcttc ttaactttat aactctggtt
     1561 taaaccttct cacgcatgct aggcaaacac tgtactactg agatttacca ccatccattt
     1621 tgtaaatttt attttttaac agggtcactc tgtagcccca gaggactggg attacagctg
     1681 tgaaccacaa cagaggccat agccttgctc tactaaagta ttagttcagg gacggggaca
     1741 tgacactgat ggtaaaggca ccagctacta agataattac aagaggattg ttgggaggga
     1801 ggtaaaggca gggttaatgg ggagggtaac acccatatag aaggagaggg ggaggggtta
     1861 gggggctgat aggcatgaaa ctgggaaagg gagtaacatt tgaaatgtaa ataagaaata
     1921 cccaatttaa taaaaatgga agaaaattaa ttaattaatt aaatgaataa ataaataaaa
     1981 taaataaatg tataaaaaaa aggagttcaa catctggatc cacatgttgg aagcataaaa
     2041 ccatccacag cacattctct gtgaatttca agcttgtact gcatccatta aaaatattta
     2101 aagttctttt ttgta
//
