LOCUS       NM_001085404            3115 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus C-type lectin domain family 2 member D-like 1
            (Clec2dl1), mRNA.
ACCESSION   NM_001085404 NM_001141943 XM_001072016 XM_006237453
VERSION     NM_001085404.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3115)
  AUTHORS   Kveberg,L., Dai,K.Z., Westgaard,I.H., Daws,M.R., Fossum,S.,
            Naper,C. and Vaage,J.T.
  TITLE     Two major groups of rat NKR-P1 receptors can be distinguished based
            on chromosomal localization, phylogenetic analysis and Clr ligand
            binding
  JOURNAL   Eur J Immunol 39 (2), 541-551 (2009)
   PUBMED   19130483
REFERENCE   2  (bases 1 to 3115)
  AUTHORS   Voigt,S., Mesci,A., Ettinger,J., Fine,J.H., Chen,P., Chou,W. and
            Carlyle,J.R.
  TITLE     Cytomegalovirus evasion of innate immunity by subversion of the
            NKR-P1B:Clr-b missing-self axis
  JOURNAL   Immunity 26 (5), 617-627 (2007)
   PUBMED   17462921
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On or before Oct 22, 2022 this sequence version replaced
            XM_006237453.4, NM_001085404.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.21283.1,
                                           SRR26643294.19862.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN11044071, SAMN16093042
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-80                JAXUCZ010000004.1  163949688-163949767
            81-254              JAXUCZ010000004.1  163951228-163951401
            255-380             JAXUCZ010000004.1  163955584-163955709
            381-559             JAXUCZ010000004.1  163956624-163956802
            560-666             JAXUCZ010000004.1  163957369-163957475
            667-3115            JAXUCZ010000004.1  163958487-163960935
FEATURES             Location/Qualifiers
     source          1..3115
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..3115
                     /gene="Clec2dl1"
                     /gene_synonym="Clec2d6"
                     /note="C-type lectin domain family 2 member D-like 1"
                     /db_xref="GeneID:689790"
                     /db_xref="RGD:1588698"
     exon            1..80
                     /gene="Clec2dl1"
                     /gene_synonym="Clec2d6"
                     /inference="alignment:Splign:2.1.0"
     exon            81..254
                     /gene="Clec2dl1"
                     /gene_synonym="Clec2d6"
                     /inference="alignment:Splign:2.1.0"
     CDS             92..793
                     /gene="Clec2dl1"
                     /gene_synonym="Clec2d6"
                     /codon_start=1
                     /product="C-type lectin domain family 2 member D6"
                     /protein_id="NP_001078873.1"
                     /db_xref="GeneID:689790"
                     /db_xref="RGD:1588698"
                     /translation="MPSSAHLQDSPPLLSRTLTQNEGQTSLRQSSSCGPSATSASESL
                     SGYTESRIPHSEMLQEKFHGIILPESPAKLLCCCAVIVVLSVAVVALSVALSVKKTPQ
                     ISTVKTYAACPRNWIGVGNKCYYFNETARNWTFSQTLCKEQEAELARFDTEEELNFLR
                     RYKGSPGCWIGLHRESSAHNWTWTDNTAYNKLLPIRGVEKHGFLSDNGISSSRDYIKR
                     NSICSKLNSYTSQCQ"
     exon            255..380
                     /gene="Clec2dl1"
                     /gene_synonym="Clec2d6"
                     /inference="alignment:Splign:2.1.0"
     exon            381..559
                     /gene="Clec2dl1"
                     /gene_synonym="Clec2d6"
                     /inference="alignment:Splign:2.1.0"
     exon            560..666
                     /gene="Clec2dl1"
                     /gene_synonym="Clec2d6"
                     /inference="alignment:Splign:2.1.0"
     exon            667..3115
                     /gene="Clec2dl1"
                     /gene_synonym="Clec2d6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtcatcaga ggcctgtttc agcaagaaga aggtggtgca gagcctccgt cgccagattg
       61 cttggaaatg ggagaaatcg ggtcctacta aatgccatcc agtgcacacc tacaggattc
      121 tcctccactc ctctccagga cccttacaca gaatgaagga cagacctcct tgaggcagag
      181 tagcagctgt ggtccgtctg ctacctctgc ctctgagtca ttgtcaggtt acaccgagtc
      241 aagaattcct cacagtgaaa tgctccaaga aaagtttcac ggaatcatcc tccctgagtc
      301 tcctgctaag cttctctgct gctgtgcagt gatcgtggtc ctcagcgtag ctgtagtagc
      361 tctttctgtt gcattgtcag taaaaaagac accacagatc tccaccgtaa aaacctatgc
      421 tgcttgcccg agaaactgga ttggagttgg aaataaatgt tattatttta atgaaacggc
      481 aaggaactgg acattcagcc agaccctctg taaggaacaa gaggccgagc tagcacgatt
      541 tgacaccgag gaggagctga atttcttaag gagatacaaa gggagtccgg gttgttggat
      601 cggtctgcac agagagtcat cagcacacaa ttggacatgg acagacaata ctgcatataa
      661 caaattgctt cccatccgag gagttgaaaa acatggtttt ctgagtgata atgggatcag
      721 cagtagcaga gactacataa agaggaattc gatttgtagc aagctcaaca gctacacctc
      781 acagtgccag tagtttcgtg ttctgggtag agagtttgtc ctagcaatca tgaggaacac
      841 ggaacatggt atctacagtt cctgcatcat taacaatgtg ctaaatcatc atcagttcat
      901 aatgtgtggt gacatctaag atgacagaca actgaggact attttgtttg ggagatcatg
      961 aattgttcta tattaagtag gtattcaggt atgagctaga tctcacgtct taaacataaa
     1021 ctaagtcacg tcagtattag tttcctctac tttctttctt ttttctcttt tttaaattta
     1081 tttatttatt tgtatgccaa atgttgtccc ctcctggttc tcccttccag agttctttac
     1141 tccacaaccc ctcttcttta cttttgagga tcctccaacc cccatcttca acccatccca
     1201 ctctgagtaa tccccctctc ttggacttta agcctctaca cgactaggtg aatcctctcc
     1261 tattagggcc aacaaggcct ctgctacata tgacctggga gctatggacc agccaatgaa
     1321 tcttctttgg tgacttaatc gccagttgat gttgttagtc ttcctatgga gttgccatcc
     1381 ctttcagttc ctttaatgct tcttttaacc cttccacagg tgtccccgac ttcagtccag
     1441 tggatggatt taagtatctg tatcagtctc agtcagctgc tggtagaacc tatcagaggg
     1501 tgcattggtc tggagtcaat agagtcaagc aatactctag ggggggggat tgagggtgat
     1561 tactgaaaag acagaaaaaa gataaaagta acagataatg ggagggctta taggtcaata
     1621 gcacgccatc cctgagtgta tgtctcacag cctttttata agatgatacc atgtgaaaga
     1681 aagtcacaag ccaacagaaa caattttgtt gaaatatata tcaggcatta gttttcacca
     1741 aaaaccttaa aatcttgtta ttttttttta ccaaggtcaa tagaatcttt agctcttagt
     1801 gttgagcctt ataagttgga ccagcgactg gatggctttt ccttcagtct ctgctctatt
     1861 tttgtccctg catttgtttt agacaggaac agttttgaag gtgattacct ctacttttat
     1921 gactagctat gaagtatttt tttcccatta gtatttttga atgactgggg tcttaaaaaa
     1981 aatgaagggc aaataacact gtgaaatgat tctgtcttga caaaaagatg attattgttc
     2041 tgtggtcttc taatactttt agaatcatca atattctttt ataatattca atgaccaaca
     2101 tgaagggaga cttagacagg tctaaaacca atattagtat tattaattta attaataagg
     2161 aatatttgtc aaaatacttt tagatttact tctcagtttt ccctttttaa ttaaagtatg
     2221 ctaagaattt gttataaacg agtcttttta ctttcttact taattttttg agaatttctg
     2281 caccctggca tcccagttgg gtgtaggcaa tgacctttta gcctctcatc aagaacctgg
     2341 taacacagct cccactgaga agtcactggg atgtctgcca gtctctcaca tctgtggtca
     2401 ggcctgtgct tcttgagcat gcaaatccct ggtggcaaaa tccttcagga acagtcacta
     2461 gcaccactgt ctcctttttc ctaacatggg gaattcaaca tcacatgaga gggatttcca
     2521 aatcaagagg actccccaaa agagggccta gatttctgga gtgaggtgtg cagagaaatg
     2581 tcacgaggag acagcattga ccgtttatga atgttgctcc cataaacaca cttattgaat
     2641 gtgtacctta tggcaaaaat cctttagaag gtgaagtaaa aaaaataaaa ataaaaaata
     2701 aaataaaatc aatgtggaga aatggcgtga ggtgactgct cccagcttgc tagttgctgg
     2761 ccatgaagga tttgtgttca tctcagcaca ctaagataaa gggcaggcag actgtctcaa
     2821 gcagaggatc ctggtgctgt gccaagaaag ctgcagaccc gaggaagtgg ccgtcccgtt
     2881 tctttactca tgagaaataa ctttatttat ggtttaatta ggtatcacac caaagagttg
     2941 aactgcagac aggtttctca gtctgcaagg actttcaggt ctctttgaac caagacaagc
     3001 tgttgctaag taaacagcac ctggtgggaa tgagaaacca tgggaaatct ttattctgct
     3061 ttctgtataa aagatgctgg aatactcaat aaactatgca ttggccttct gtgca
//
