LOCUS       NM_001085402            3107 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus C-type lectin domain family 2 member D2
            (Clec2d2), mRNA.
ACCESSION   NM_001085402 XM_001067087 XM_017592708 XM_342767
VERSION     NM_001085402.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3107)
  AUTHORS   Kveberg,L., Dai,K.Z., Westgaard,I.H., Daws,M.R., Fossum,S.,
            Naper,C. and Vaage,J.T.
  TITLE     Two major groups of rat NKR-P1 receptors can be distinguished based
            on chromosomal localization, phylogenetic analysis and Clr ligand
            binding
  JOURNAL   Eur J Immunol 39 (2), 541-551 (2009)
   PUBMED   19130483
REFERENCE   2  (bases 1 to 3107)
  AUTHORS   Voigt,S., Mesci,A., Ettinger,J., Fine,J.H., Chen,P., Chou,W. and
            Carlyle,J.R.
  TITLE     Cytomegalovirus evasion of innate immunity by subversion of the
            NKR-P1B:Clr-b missing-self axis
  JOURNAL   Immunity 26 (5), 617-627 (2007)
   PUBMED   17462921
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On or before Oct 7, 2022 this sequence version replaced
            XM_017592708.2, NM_001085402.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ221935.1, SRR26643291.13804.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676810 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-80                JAXUCZ010000004.1  163757082-163757161 c
            81-254              JAXUCZ010000004.1  163755418-163755591 c
            255-380             JAXUCZ010000004.1  163750394-163750519 c
            381-559             JAXUCZ010000004.1  163749338-163749516 c
            560-666             JAXUCZ010000004.1  163748661-163748767 c
            667-3107            JAXUCZ010000004.1  163745080-163747520 c
FEATURES             Location/Qualifiers
     source          1..3107
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..3107
                     /gene="Clec2d2"
                     /gene_synonym="Clr2; RGD1562831"
                     /note="C-type lectin domain family 2 member D2"
                     /db_xref="GeneID:362445"
                     /db_xref="RGD:1562831"
     exon            1..80
                     /gene="Clec2d2"
                     /gene_synonym="Clr2; RGD1562831"
                     /inference="alignment:Splign:2.1.0"
     exon            81..254
                     /gene="Clec2d2"
                     /gene_synonym="Clr2; RGD1562831"
                     /inference="alignment:Splign:2.1.0"
     CDS             92..793
                     /gene="Clec2d2"
                     /gene_synonym="Clr2; RGD1562831"
                     /note="C-type lectin-related protein 2"
                     /codon_start=1
                     /product="C-type lectin domain family 2 member D2"
                     /protein_id="NP_001078871.1"
                     /db_xref="GeneID:362445"
                     /db_xref="RGD:1562831"
                     /translation="MPSSAHLQDAPPLLSRTLTQDEEQTSLRQSSSCGLSAASASESL
                     SGSTKSRIPHSKMLQGNLPRIISPESPAKLPCCYGVIMVLSVAVVALSVALSVKKTPQ
                     ILTVKTYAACPRNWIGVGNKCYYFNETPSNWTFSQTLCKAQEAELARFDTEEELNFLK
                     RHKGSSGYWIGLHRESSSQPWKWTDNTAYNNLVPIGGDEKHGFLSDNGFSSGRGYIVR
                     KSICSKPNSYTSQCQ"
     exon            255..380
                     /gene="Clec2d2"
                     /gene_synonym="Clr2; RGD1562831"
                     /inference="alignment:Splign:2.1.0"
     exon            381..559
                     /gene="Clec2d2"
                     /gene_synonym="Clr2; RGD1562831"
                     /inference="alignment:Splign:2.1.0"
     exon            560..666
                     /gene="Clec2d2"
                     /gene_synonym="Clr2; RGD1562831"
                     /inference="alignment:Splign:2.1.0"
     exon            667..3107
                     /gene="Clec2d2"
                     /gene_synonym="Clr2; RGD1562831"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attcatcaga ggctcattgc ttcagcaaga agaaggtgca gatcctccct ccccagattg
       61 cttggaaaca ggagaaaacc ggacgtaatc aatgccgtcc agtgcacacc tacaggatgc
      121 tcctccactc ctctccagga cccttacaca ggatgaagaa cagacctcct tgaggcagag
      181 tagcagctgt ggtctgtctg cagcctctgc ctctgagtca ttgtcaggtt ctaccaagtc
      241 aagaattcct cacagtaaaa tgctccaagg aaatcttccc agaatcatct cccctgagtc
      301 tcctgctaag cttccctgct gctatggagt gatcatggtc ctcagtgtag ctgtagtagc
      361 tctttctgtt gctttgtcag taaaaaagac accacagatc ttaaccgtaa aaacctacgc
      421 tgcttgcccg agaaactgga taggagttgg aaataaatgt tattatttta atgaaacgcc
      481 aagtaactgg acattcagcc agaccctctg taaggcacaa gaggccgagc tagcacgatt
      541 tgacaccgag gaggagctga atttcctaaa gagacacaaa gggagttcgg gttactggat
      601 cggtctgcac agagagtcat catcacagcc ttggaagtgg acagacaaca ctgcatataa
      661 caacttggtt cccatcggag gagatgaaaa acatggtttc ctgagtgaca atgggttcag
      721 cagtggcagg ggttacatag tgaggaagtc gatttgtagc aagcccaaca gctacacctc
      781 acagtgccag tagttttgtg tcctgggtag agagtttgtc ctagcaatca cgaggaacac
      841 agaacatgct atctacagtg tctgcatcat taacaatctg ctaaaatcat cttcagttca
      901 taatgtgtgg tgacatctaa gatgacaatt gaggcatatt ttgcttggga aatcatgaat
      961 tgttctacat taaataagta ttcaggtatg agctggttct cacatcttaa acataaactg
     1021 aatcacatca gtattagtta cctctatttt cttttttctc tttcttaaat tatattatta
     1081 atttatatta caaatgctgt ccctcctttt tcccccttct agagttcttc actccatacc
     1141 ctctcttctt tacttctgaa gagatgttcc tccaaccccc atccttaaac caccccactc
     1201 tgagtatttc ccttctcttg gactttaggt ctctacagga ttaggtgcat cctctcctag
     1261 tgaggccaac aaggtagtcc tctgctatgc atgacctggg ggctatggac catccaatgt
     1321 atcttttttg gagacttagt ctctgggagc tcctagggtc caggttagtt gatgttgtta
     1381 gtcttccttt ggagttgcca tccctttcag ctcctttaat gctgcttcta acccttccat
     1441 aggtgtcccc gacttcagtc cagtggttgg ctttaagtat ctgtatcagt ctcagtcagc
     1501 tcctggtaga gcctctcaga gggtgcaatg gtctagctgg tatgaagttg agcaatcctc
     1561 tgagggggta gtgaggatga ttgcaggaaa gatagaaaac agataaaaga tacagataat
     1621 cagagggcta taggtcaata gcacgccatc cctgagtgta tttctcacag ctttttataa
     1681 tatgatacca tgggaaagaa agtcacaagc caacagaagc aattttgttg aaatgtatat
     1741 gagacattag ttttcaccaa aaatcttaaa accttattat tgttagtttt taccaaggtc
     1801 aatagaatct ttagctctta gtgttgaacc tcacaagttt ggccaaggac tggatggctt
     1861 ttccttcact ctctgctctc tttttgtccc tgcatttctt ttagccagga acagttttga
     1921 aggtgctgac ctctgctttt atgaccagat atgaagtatt ttttccataa gtatttttga
     1981 atgactgggg ccttaaaaaa atgaagggca aataacactg tgaaatgatt ccatcatgac
     2041 aaaaagatga ttattgttct gtggtcttct aatattttta gaatcatcaa tattctttta
     2101 taatactcga tgatcaacat gaagggacac agggctaaag ccaatattag cattatcaat
     2161 ttaattaata agtaatgttt atcaaaatac ttttagattt acttctgttt tcccttttta
     2221 attaaagtgt actaagaata tgttataaat gagtcatttt gctttcgtat ttaattcttt
     2281 gagaatttct gcaccttggc atcccagttg ggtgtaggca atgaatgacc ttttagtttc
     2341 tcatcaagga cctggtaaca cagctcccac tgagaagtca ctgggatgtc tgccagtctc
     2401 tcacatctgt ggtcaggcct gtgcttcttg agcatgcaaa tccctggtgg caaaatcctt
     2461 caggaacagt cactagcacc actgcctcct ttttcctaac atggggaatt caacatcaca
     2521 tgagagggat ttccaaatcc agaggagtcc cccaaagagg acctggagat ttctggagtg
     2581 aggtgtgcag agaaatgtca tgaggagact ggattgactg tttatgaatg ttgctcccat
     2641 aaacatactt ctcgaatgtg taccttatgg caaaaatcct ttagaaggag aattacagaa
     2701 taaaaaggga aattgtagag aaatggcagg aggcaactgc tcccagcttg ctagctgctg
     2761 gccgtgaagg atttgtgttc atctcaacac actaagataa agggcaggca gactgtctca
     2821 agcagaggat cctggtgctg tgccaagaaa gctgcaaacc tgaggaagtg gccgtcctat
     2881 ttctttactc atgagaaata actttattta tggtttaatt aggtatcaca ccaaagagtt
     2941 gaactgcaga caggtttctc agtctgcaag gactttcagg tctccttgaa ccaagacagg
     3001 ctatggctaa gtaaacagca cctggtggga atgagaaacc gtggtaaatc attattgtgt
     3061 tttctgtata aaagatgctg aaatgtccaa taaaatatgt attgtta
//
