LOCUS       NM_130402               1682 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus C-type lectin domain family 2, member D (Clec2d),
            mRNA.
ACCESSION   NM_130402 XM_039106898
VERSION     NM_130402.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Germain,C., Bihl,F., Zahn,S., Poupon,G., Dumaurier,M.J.,
            Rampanarivo,H.H., Padkjaer,S.B., Spee,P. and Braud,V.M.
  TITLE     Characterization of alternatively spliced transcript variants of
            CLEC2D gene
  JOURNAL   J Biol Chem 285 (46), 36207-36215 (2010)
   PUBMED   20843815
REFERENCE   2  (bases 1 to 1682)
  AUTHORS   Aust,J.G., Gays,F., Mickiewicz,K.M., Buchanan,E. and Brooks,C.G.
  TITLE     The expression and function of the NKRP1 receptor family in C57BL/6
            mice
  JOURNAL   J Immunol 183 (1), 106-116 (2009)
   PUBMED   19535641
REFERENCE   3  (bases 1 to 1682)
  AUTHORS   Quan,J.X., Zheng,F., Li,X.X., Hu,L.L., Sun,Z.Y., Jiao,Y.L. and
            Wang,B.L.
  TITLE     Cloning and analysis of rat osteoclast inhibitory lectin gene
            promoter
  JOURNAL   J Cell Biochem 106 (4), 599-607 (2009)
   PUBMED   19127542
  REMARK    GeneRIF: transcriptionaL level gene expression regulation of rat
            OCIL gene
REFERENCE   4  (bases 1 to 1682)
  AUTHORS   Voigt,S., Mesci,A., Ettinger,J., Fine,J.H., Chen,P., Chou,W. and
            Carlyle,J.R.
  TITLE     Cytomegalovirus evasion of innate immunity by subversion of the
            NKR-P1B:Clr-b missing-self axis
  JOURNAL   Immunity 26 (5), 617-627 (2007)
   PUBMED   17462921
REFERENCE   5  (bases 1 to 1682)
  AUTHORS   Carlyle,J.R., Jamieson,A.M., Gasser,S., Clingan,C.S., Arase,H. and
            Raulet,D.H.
  TITLE     Missing self-recognition of Ocil/Clr-b by inhibitory NKR-P1 natural
            killer cell receptors
  JOURNAL   Proc Natl Acad Sci U S A 101 (10), 3527-3532 (2004)
   PUBMED   14990792
REFERENCE   6  (bases 1 to 1682)
  AUTHORS   Iizuka,K., Naidenko,O.V., Plougastel,B.F., Fremont,D.H. and
            Yokoyama,W.M.
  TITLE     Genetically linked C-type lectin-related ligands for the NKRP1
            family of natural killer cell receptors
  JOURNAL   Nat Immunol 4 (8), 801-807 (2003)
   PUBMED   12858173
REFERENCE   7  (bases 1 to 1682)
  AUTHORS   Zhou,H., Kartsogiannis,V., Quinn,J.M., Ly,C., Gange,C., Elliott,J.,
            Ng,K.W. and Gillespie,M.T.
  TITLE     Osteoclast inhibitory lectin, a family of new osteoclast inhibitors
  JOURNAL   J Biol Chem 277 (50), 48808-48815 (2002)
   PUBMED   12374791
REFERENCE   8  (bases 1 to 1682)
  AUTHORS   Zhou,H., Kartsogiannis,V., Hu,Y.S., Elliott,J., Quinn,J.M.,
            McKinstry,W.J., Gillespie,M.T. and Ng,K.W.
  TITLE     A novel osteoblast-derived C-type lectin that inhibits osteoclast
            formation
  JOURNAL   J Biol Chem 276 (18), 14916-14923 (2001)
   PUBMED   11278931
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On or before Oct 5, 2022 this sequence version replaced
            XM_039106898.1, NM_130402.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.18163.1,
                                           SRR26643291.13805.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840107, SAMN12840108
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-70                JAXUCZ010000004.1  163902633-163902702
            71-244              JAXUCZ010000004.1  163904182-163904355
            245-418             JAXUCZ010000004.1  163914853-163915026
            419-544             JAXUCZ010000004.1  163921834-163921959
            545-723             JAXUCZ010000004.1  163922858-163923036
            724-830             JAXUCZ010000004.1  163923603-163923709
            831-1682            JAXUCZ010000004.1  163924736-163925587
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1682
                     /gene="Clec2d"
                     /gene_synonym="Clec2d5; Ocil"
                     /note="C-type lectin domain family 2, member D"
                     /db_xref="GeneID:113937"
                     /db_xref="RGD:620070"
     exon            1..70
                     /gene="Clec2d"
                     /gene_synonym="Clec2d5; Ocil"
                     /inference="alignment:Splign:2.1.0"
     exon            71..244
                     /gene="Clec2d"
                     /gene_synonym="Clec2d5; Ocil"
                     /inference="alignment:Splign:2.1.0"
     exon            245..418
                     /gene="Clec2d"
                     /gene_synonym="Clec2d5; Ocil"
                     /inference="alignment:Splign:2.1.0"
     CDS             256..957
                     /gene="Clec2d"
                     /gene_synonym="Clec2d5; Ocil"
                     /note="osteoclast inhibitory lectin"
                     /codon_start=1
                     /product="C-type lectin domain family 2 member D5"
                     /protein_id="NP_569086.1"
                     /db_xref="GeneID:113937"
                     /db_xref="RGD:620070"
                     /translation="MPSSAHLQDPPPLLSRTLTQNEGQTSLRQSSSCGPSAASASESL
                     SGSTESRIPHSKMLQGKLPRNIPLEYPAGLYCCYVVIIVLSVAVVALSVALSVKKTAQ
                     ISTINTYAACPRNWIGVGNKCFYFNEIPSNWTLSQTLCKEQGAELARFDTEEELNFLR
                     RYKGSSGYWFGLHRESSAHPWKWTDNTEYNNSVSIGGDEKHGFLSDNGFSSGRGYIVR
                     KSICRKPNSYTSQCL"
     exon            419..544
                     /gene="Clec2d"
                     /gene_synonym="Clec2d5; Ocil"
                     /inference="alignment:Splign:2.1.0"
     exon            545..723
                     /gene="Clec2d"
                     /gene_synonym="Clec2d5; Ocil"
                     /inference="alignment:Splign:2.1.0"
     exon            724..830
                     /gene="Clec2d"
                     /gene_synonym="Clec2d5; Ocil"
                     /inference="alignment:Splign:2.1.0"
     exon            831..1682
                     /gene="Clec2d"
                     /gene_synonym="Clec2d5; Ocil"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctcattgc ttcagcaaga agaaggtgca gatcctccct ccccagattg cttggaaaca
       61 ggagaaaacc ggccctacta aatgccatcc agtgcacacc tacaggatcc tcccccactc
      121 ctctccagga cccttacaca gaatgaagga cagacctcct tgaggcagag tagcagctgt
      181 ggtctgtctg ctgcctctgc ctctgagtca ttgtcaggtt ccacagagtc aagaattcct
      241 cacaggacgt aatcaatgcc gtccagtgca cacctacagg atcctccccc actcctctcc
      301 aggaccctta cacagaatga aggacagacc tccttgaggc agagtagcag ctgtggtccg
      361 tctgctgcct ctgcctctga gtcattgtca ggttccacag agtcaagaat tcctcacagt
      421 aaaatgctcc aaggaaagct tcccagaaac atccccctgg agtatcctgc tgggctttac
      481 tgctgctacg tagtgatcat tgtcctcagt gtagctgtag ttgctctttc tgttgctttg
      541 tcagtaaaaa agacagcaca gatctcaacc ataaatactt atgctgcttg cccgagaaac
      601 tggattggag ttggaaataa atgtttttat tttaatgaaa taccaagtaa ctggacattg
      661 agccagaccc tctgtaagga acaaggggcc gagctagcac gatttgacac cgaggaggag
      721 ctgaatttcc taaggagata caaagggagt tcaggttact ggttcggtct gcacagagag
      781 tcatcagcgc acccttggaa gtggacagac aacactgagt ataacaactc ggtttccatc
      841 ggaggagatg aaaaacatgg tttcctgagt gacaatgggt tcagcagtgg caggggttat
      901 atagtgagga agtcgatttg taggaagccc aacagctaca cctcacagtg cctgtagttt
      961 tgtgtccttg gttgagagtt tgtcctagca gtcatgagga acacagaaca tggtatctac
     1021 agtgcctgaa tcatgaacaa tctgctaaaa tcatcttcaa ttcataatgt gtggtgacat
     1081 ctaagataac aactgaggca tattttgctt gggagatcat gaattgttct atattaaata
     1141 ggtattcagg tatgagctgg ttctcacatc ttaaacataa actgaatcat gtcagtatta
     1201 gttatctcta ctttcttttt tctctcattt aaattatatt atttatttat attccaaata
     1261 ccgtcccctc cttgttcccc cttctagagt tcttcactcc ataccccttc atctttactt
     1321 ctgaagagat gttcccccac cccactctga gtatttccct tctcttggac tttaggactg
     1381 tacaggatta ggtgcatcct ctcatagtga ggccaactgt agggagctgc gacatgccgt
     1441 gcctcaaaat ggtgctggtt tccgccttcc accctcccaa cagtgagcgc tccttgtagt
     1501 aaacaagtcc ttatttgact atgcctgcct ggcctgctag gttcagcata gtgacagcct
     1561 gtctgcatga cccatgtggc acgttggggt tggttggtgt tggatacata agctgatgta
     1621 gggcattccc tggggtagta gatgattgta tcaaggttcc tgaataaact gcttgaagaa
     1681 ga
//
