LOCUS       XM_039091380            1459 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus C-type lectin domain containing 20A
            (Clec20a), transcript variant X1, mRNA.
ACCESSION   XM_039091380
VERSION     XM_039091380.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091380.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1459
                     /gene="Clec20a"
                     /note="C-type lectin domain containing 20A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:102555826"
                     /db_xref="RGD:7603387"
     CDS             203..1405
                     /gene="Clec20a"
                     /codon_start=1
                     /product="putative C-type lectin domain family 20 member
                     A"
                     /protein_id="XP_038947308.1"
                     /db_xref="GeneID:102555826"
                     /db_xref="RGD:7603387"
                     /translation="MADPAVGHRISLVSPLKDLTTLPEEAEVKIGGQTFIRIKQTMTW
                     LSALTYCRHHYTDLADLQRVTDKDKDSLKPVINGDDAWIGLYFSVKINHLTWSSDQGS
                     SIPEWLQEMPMFGQGLCAGIRTFANHPPQIYALLCPDLKPFICFNDPSIGHRQSAEMP
                     SLIDTSSPRVTQHSKVPTRTTSRPNTGTSTDSTDASQVLDSASWIPRQVSHEPTAVSS
                     GTCGFRTCDTTTPASTTVGLTALQSQGMVSIRPVATSAYPGETKERTTEASVSGSTAE
                     VQGNWTSVPAAWNPDTSTGTAGSLPGTTTAMTTVEGGIYKGDTTSATEAQHLCSPKYP
                     ESKKKAAASESEHSFGILKADFAIPALRDPEEMKDQLLSEIQEVLKLILGHEEFTLKW
                     IGSEVNKK"
ORIGIN      
        1 gcctgcctga atgctgccat gctcctgcct tgaggataat ggactgaacc tctgaacctg
       61 tcacagatca tcattgaggg aactcaaggc agaaacctga aagtagtccc aattgctatt
      121 ccacatagcg ttacttccac caagaaactc atttcacagc caaagaagct cagcaggaac
      181 tatggaagat gctttttgct agatggcaga ccctgctgta ggacaccgca tctccttggt
      241 gtcccctctc aaggacctga ccactcttcc agaggaagct gaggtcaaga ttggtggaca
      301 gaccttcatt cggattaaac aaaccatgac gtggctctcg gctctgacct actgtcgcca
      361 ccactacaca gacctggccg atctgcagag agttaccgac aaggacaaag acagtctcaa
      421 gcccgtcata aatggtgacg atgcctggat tggcctctat ttcagtgtaa agatcaacca
      481 tctgacctgg tccagtgacc agggttccag catccctgag tggctacagg aaatgcctat
      541 gtttggtcaa ggactgtgtg caggaattcg tacctttgca aatcacccac ctcagattta
      601 tgcactgctt tgtcctgatc tgaaaccttt tatctgtttc aacgacccct ccattggaca
      661 tcggcagtca gcagagatgc cctcactcat tgatacttcc tcccctagag tgactcagca
      721 ctcaaaagtt cctacaagga caacctctag gccaaacaca gggaccagca ctgactccac
      781 agatgcctcc caagtgttgg attcagcatc ctggatccca cggcaagtga gtcatgaacc
      841 aactgcggtc agctctggaa cctgtggctt cagaacctgt gacaccacca ctcctgcctc
      901 aaccaccgtg ggcctcacag ctctccaatc tcaagggatg gtttcaatac gtcctgtggc
      961 aacctctgca tatccaggag agaccaaaga gcgaactacg gaggcatctg tctcagggag
     1021 cacagcagag gtccaaggaa attggaccag tgttcctgca gcctggaacc cggacaccag
     1081 cactgggaca gctgggagcc tgccaggaac tactacagct atgaccactg tagagggcgg
     1141 catatataaa ggagacacaa cttctgccac tgaggctcaa catttatgct cacctaagta
     1201 cccagagtct aaaaagaaag cggcagcatc agaatcagag cactcctttg gaatcctgaa
     1261 agcagatttt gccatcccag cactgaggga tccagaagag atgaaagacc aacttttgag
     1321 cgagatccaa gaagtcttaa agcttatact aggtcacgag gaattcaccc tgaaatggat
     1381 cggctccgaa gtgaacaaaa aatagcaaac ccactcgctt tcactttcct taggctctct
     1441 tccaggtggt ctttagggt
//
