LOCUS       NM_001191978             915 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus C-type lectin domain family 1, member B (Clec1b),
            mRNA.
ACCESSION   NM_001191978 XM_575687
VERSION     NM_001191978.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 915)
  AUTHORS   Mazharian A, Wang YJ, Mori J, Bem D, Finney B, Heising S, Gissen P,
            White JG, Berndt MC, Gardiner EE, Nieswandt B, Douglas MR, Campbell
            RD, Watson SP and Senis YA.
  TITLE     Mice lacking the ITIM-containing receptor G6b-B exhibit
            macrothrombocytopenia and aberrant platelet function
  JOURNAL   Sci Signal 5 (248), ra78 (2012)
   PUBMED   23112346
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 915)
  AUTHORS   Flornes LM, Nylenna O, Saether PC, Daws MR, Dissen E and Fossum S.
  TITLE     The complete inventory of receptors encoded by the rat natural
            killer cell gene complex
  JOURNAL   Immunogenetics 62 (8), 521-530 (2010)
   PUBMED   20544345
REFERENCE   3  (bases 1 to 915)
  AUTHORS   Mori J, Pearce AC, Spalton JC, Grygielska B, Eble JA, Tomlinson MG,
            Senis YA and Watson SP.
  TITLE     G6b-B inhibits constitutive and agonist-induced signaling by
            glycoprotein VI and CLEC-2
  JOURNAL   J Biol Chem 283 (51), 35419-35427 (2008)
   PUBMED   18955485
REFERENCE   4  (bases 1 to 915)
  AUTHORS   Colonna M, Samaridis J and Angman L.
  TITLE     Molecular characterization of two novel C-type lectin-like
            receptors, one of which is selectively expressed in human dendritic
            cells
  JOURNAL   Eur J Immunol 30 (2), 697-704 (2000)
   PUBMED   10671229
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JACYVU010000150.1.
            
            [WARNING] On Mar 31, 2024 this sequence was replaced by
            NM_001191978.3.
            
            On Feb 10, 2021 this sequence version replaced NM_001191978.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ227324.1, FQ227184.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-214               JACYVU010000150.1  5646960-5647173
            215-310             JACYVU010000150.1  5650044-5650139
            311-436             JACYVU010000150.1  5651430-5651555
            437-588             JACYVU010000150.1  5651699-5651850
            589-695             JACYVU010000150.1  5653476-5653582
            696-915             JACYVU010000150.1  5654953-5655172
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..915
                     /gene="Clec1b"
                     /gene_synonym="RGD1563517"
                     /note="C-type lectin domain family 1, member B"
                     /db_xref="GeneID:500336"
                     /db_xref="RGD:1563517"
     exon            1..214
                     /gene="Clec1b"
                     /gene_synonym="RGD1563517"
                     /inference="alignment:Splign:2.1.0"
     CDS             151..840
                     /gene="Clec1b"
                     /gene_synonym="RGD1563517"
                     /codon_start=1
                     /product="C-type lectin domain family 1 member B"
                     /protein_id="NP_001178907.1"
                     /db_xref="GeneID:500336"
                     /db_xref="RGD:1563517"
                     /translation="MQDEDGYITLNIKPRKQALSSAEPASSWWRLTALILLISTMGLV
                     AGLVALGIMSVTQQKYLLAEKENLSATLQQLAKKFCQELIRQSEIKTKSSFEHKCSPC
                     ATKWRYHGDSCYGFFRRNLTWEDSKLFCSEQNATLVKTASQSTLKYITDRITSVRWIG
                     LSRQNSKKDWMWEDSSVLHNNSIDLSRNTEENMNCAYLHNGKIHPASCTERHYLICER
                     NAALTRVEQLL"
     exon            215..310
                     /gene="Clec1b"
                     /gene_synonym="RGD1563517"
                     /inference="alignment:Splign:2.1.0"
     exon            311..436
                     /gene="Clec1b"
                     /gene_synonym="RGD1563517"
                     /inference="alignment:Splign:2.1.0"
     exon            437..588
                     /gene="Clec1b"
                     /gene_synonym="RGD1563517"
                     /inference="alignment:Splign:2.1.0"
     exon            589..695
                     /gene="Clec1b"
                     /gene_synonym="RGD1563517"
                     /inference="alignment:Splign:2.1.0"
     exon            696..915
                     /gene="Clec1b"
                     /gene_synonym="RGD1563517"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacgaagcaa aacaaaaccc aagtgttctg atgcgcatgg ctccagagca gcaagagaca
       61 aggatcccag gctgaaatcc taagagggga cgctgggtga gttctgcaaa agtcactgag
      121 ctttgacctc ctggcagttc aaggggaacc atgcaggatg aagatggata tatcacctta
      181 aacatcaagc cccggaaaca agctctcagc tcagctgagc ctgcctcttc ttggtggcgt
      241 ttgacggctt taattctgct gatctcaacc atggggctgg ttgctggact cgtggctctg
      301 gggatcatgt cagtcacaca acaaaaatat ctactggccg aaaaggaaaa tctctcagcc
      361 actctgcaac aattggccaa gaaattctgc caggagttga ttagacaatc agaaattaag
      421 actaagagct cttttgagca caagtgcagc ccctgcgcca caaagtggag ataccatgga
      481 gacagttgct atgggttctt caggcgtaac ctaacatggg aagacagcaa gctgttttgc
      541 tctgagcaga atgcaactct tgtgaagacc gccagccaga gcacgctgaa atacatcaca
      601 gacaggatta cttcagtccg ttggattgga ttatcacgcc agaactctaa gaaagactgg
      661 atgtgggaag acagctcagt tcttcacaat aattcgattg atctttctag gaatacagaa
      721 gaaaacatga attgtgctta tcttcataat ggaaaaatcc acccagcttc ctgtacagag
      781 agacattact taatatgtga gagaaatgct gccctgacaa gagtggaaca actgctttaa
      841 tgcagaagga ccggcaggat gtcagagaag tgcttgacca tgcaataaaa gatctggaca
      901 aagcaaccca taaaa
//
