LOCUS       NM_001109253            3299 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus C-type lectin domain family 1, member A (Clec1a),
            mRNA.
ACCESSION   NM_001109253 XM_001067934 XM_575688
VERSION     NM_001109253.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3299)
  AUTHORS   Flornes LM, Nylenna O, Saether PC, Daws MR, Dissen E and Fossum S.
  TITLE     The complete inventory of receptors encoded by the rat natural
            killer cell gene complex
  JOURNAL   Immunogenetics 62 (8), 521-530 (2010)
   PUBMED   20544345
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473964.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_575688.2, XM_001067934.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GU357481.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676807, SAMN16676809
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3299
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..3299
                     /gene="Clec1a"
                     /gene_synonym="RGD1566110"
                     /note="C-type lectin domain family 1, member A"
                     /db_xref="GeneID:500337"
                     /db_xref="RGD:1566110"
     exon            1..397
                     /gene="Clec1a"
                     /gene_synonym="RGD1566110"
                     /inference="alignment:Splign:2.1.0"
     CDS             286..1095
                     /gene="Clec1a"
                     /gene_synonym="RGD1566110"
                     /codon_start=1
                     /product="C-type lectin domain family 1 member A"
                     /protein_id="NP_001102723.1"
                     /db_xref="GeneID:500337"
                     /db_xref="RGD:1566110"
                     /translation="MQAKYSSTRDMLDDDDTTISLYSGTSTVTRRAEPRHSENGTPSS
                     VWRPVALTLLTLCLVLLVGLAALGLVFFQFYQLSNTQQDSITEKDERLGNMSRQLQSL
                     QTQNRKLTETLQQVAVKLCRELYNKSGGHRCSPCPEKWKWHGNKCYQFYKESKTWQSC
                     EYFCLADNATMLKISTQEELDFAMPQSYSEFFYSYWTGLSRNGSGKAWLWTDGTPYSF
                     ELFEIIIDPTNLRSRDCMTIFNGKAYSKDCKELRRCACERVAGRVVPEELQ"
     exon            398..496
                     /gene="Clec1a"
                     /gene_synonym="RGD1566110"
                     /inference="alignment:Splign:2.1.0"
     exon            497..673
                     /gene="Clec1a"
                     /gene_synonym="RGD1566110"
                     /inference="alignment:Splign:2.1.0"
     exon            674..825
                     /gene="Clec1a"
                     /gene_synonym="RGD1566110"
                     /inference="alignment:Splign:2.1.0"
     exon            826..944
                     /gene="Clec1a"
                     /gene_synonym="RGD1566110"
                     /inference="alignment:Splign:2.1.0"
     exon            945..3299
                     /gene="Clec1a"
                     /gene_synonym="RGD1566110"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtctgaaaa agccagatat tttaataacg gttcacggat cgcttagcca gaaaacacat
       61 gcaattttcc ctcagccaga ctaacttggc attctgaata caggctcaga ggggaggggc
      121 tgggcctctc cacgcaggaa ctggagtcag aggcttccct tgctgcctgc agggagagac
      181 cattaagaat gcctctcagt gcctggtttc ctgaggtatc tgagagtaga caggcgacct
      241 cgaggaatct gagcacatct caccggcatt tctgcaggaa tcaggatgca ggccaaatac
      301 agcagcacaa gggacatgct cgatgacgat gacaccacca taagcctgta ttctggaaca
      361 tccactgtca ccagacgagc agagcccagg cactcagaga atgggacacc ctcttcagtt
      421 tggcgcccag tggccctgac cctgctgacc ttgtgtttgg tgttgctcgt tggcctggca
      481 gccctgggcc ttgtgttttt tcagttctac cagctctcca atacccagca ggacagcatc
      541 actgaaaagg atgaaaggct ggggaacatg tcccgacaac tacagtccct ccagacccag
      601 aacagaaaac tcactgaaac tctgcagcag gtagccgtaa aactgtgtcg tgaactttac
      661 aacaaaagtg gaggacatag atgcagtcct tgcccagaaa aatggaagtg gcatgggaac
      721 aaatgttatc agttctacaa agaaagtaaa acctggcaaa gctgtgaata cttctgcctg
      781 gctgacaatg ccaccatgct gaagataagc actcaggaag agctggattt tgccatgccc
      841 cagagctact ctgagttttt ctactcttat tggacagggc tctcccgcaa tggcagtggc
      901 aaagcctggc tgtggacaga tgggacacct tactcctttg aactgtttga gattataata
      961 gatcccacca acctaagaag cagggactgc atgaccatct tcaatggaaa ggcttactct
     1021 aaggactgca aagagctgag gaggtgtgcc tgtgagaggg tggcaggaag agtggtcccc
     1081 gaggagctcc agtaggggac atgaagcact ggataaaagg ggccaacagg tcagcttcaa
     1141 ccaccagcaa aaggattgtc aagggagggc aacgtgaagg agattcaaag ctttgggaaa
     1201 cagagaggca gctgctgggc ctggtatatg agaggttctc ctggttccag ctcagcatta
     1261 tccaggcctg ggctttactt cttgcccaca ttttccaagc acaaaaagtc ttacttgtga
     1321 accacctagc cccaggaagc catagagttg tccttttcga tttacagaag attttcagct
     1381 ttttcccttc tcagggtctg ttattagcct ctgcttcatg tctctcttat tcttggaaaa
     1441 gtgagaaata taagaaaata gaagggttga tacaaagagc acaaactggg tgtgctggta
     1501 tccacacaag tattggtcac agcacttgga aggaggagaa agacatgaga agttcaaggc
     1561 cagcctcaga tacatagttg aaggccatcc taggctacat gatacatctt ctcaagtaac
     1621 agggaaataa aggaacaaaa gaacaagaga gaaaaaaaga agaattaaaa cagaaatgtg
     1681 aaaaagcaaa gtgaaaagag agaacagaag aaaaagactt ggcgtccttt atcctaacag
     1741 acagtccaag aaaagctagc agaagtcccc acccctgtgc tgctctacac acagacaatt
     1801 ttgtgtgtgt gcgtccagtt cacacttggc cttttcgagg ctttcaaaag tgacttcacc
     1861 tgttgcatcc gtgtccagct ttccagctga tacagttcac actatgtcaa tcaccactcc
     1921 atcaaatgtg tctttcccta aacccgtctc cgaggaaaga gacaactctg atctaaatta
     1981 gaattaatat ccctgtactc ccaaagagac aaagcctaga aaacacgata acaaaacaaa
     2041 caaacaacaa atatcaaata acaacaaaat ctaaaacagt ctctgtatat gcacggataa
     2101 tagttcgatt tcttctgcca tcatgtttga acaacgttta tacctttcag gtactgaatg
     2161 tttaataata atatgtgtaa ataatgtgaa acgggtgagg ttctagagtg ggtttgtgat
     2221 ttgggagggg agtatcaaca aaggaatcct tttcataata tggaaacaat cacttcttga
     2281 ctgcttgtgc attgacaatt ggtagggcca ctctaaagat attgtttatg acattactta
     2341 agtataagaa agttttcaaa gcatattgtc ttcaagagga tgaccttaca atattcctaa
     2401 agtgaaatgt ttgaggcaaa atcaggacaa tgagcttggt atgttgacta acggagttgg
     2461 gggagaggca caatttctca acaggcgtgg gatgagaaag agaagctgtg acatctgcac
     2521 agccagactc ttgactagac ataagtttct ctgggtggtg acattcaaag ccacaacagg
     2581 gtctttgttc atagcaccat gccaagtggt ttcattgctg taacattcag gggttggaag
     2641 taccaacaat agatttttca cactctaaat tttcaataat aaaagttggg aaacatctat
     2701 ttcatgatga aattacaatt aaattagctc tttgttatga aaaacaattc catatttatt
     2761 ttcataagac ttaattttat tactgtcatt tatctagaca ttactgggag gctacttgag
     2821 ttttctttta gatttccgtc atgtttgcta gggtaggact tcaatattga attatatgca
     2881 ggtttcctgg gtcaagcaaa cagaatattt ttaaaaccgt atattggcgg ttttaaaatg
     2941 gaggatttgg gtccttcttg ttttggtttg tttattgagc caatcacccc atgtcatgta
     3001 gcttactaaa atgtgggaat atttatagtc tccctatgag attacttaaa attaggtgtg
     3061 aagttagtct catgatgtag gttgcaatat aaaatgtttt ggaaattaag aaaatattct
     3121 aaatgtttta gtgattcttt aactataggg gaacccaaag gcagcatctg tattcattaa
     3181 agagaaaaag tattctcaaa tattttccgt aattaacaaa ataatgcctg ttgcttctgt
     3241 ttggttaaat tgtctaatac agtatttcaa aatatggaat aaagatcaag tccatcact
//
