LOCUS       XM_039097903             705 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus C-type lectin domain containing 19A
            (Clec19a), mRNA.
ACCESSION   XM_039097903
VERSION     XM_039097903.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 48% of CDS bases
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..705
                     /gene="Clec19a"
                     /note="C-type lectin domain containing 19A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein"
                     /db_xref="GeneID:100909498"
                     /db_xref="RGD:6503302"
     CDS             1..705
                     /gene="Clec19a"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 2 bases at 2
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:163..165,aa:OTHER)
                     /transl_except=(pos:550..552,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: C-type lectin domain family
                     19 member A"
                     /protein_id="XP_038953831.1"
                     /db_xref="GeneID:100909498"
                     /db_xref="RGD:6503302"
                     /translation="MLLIKHMIVQNNLENSDLGTSASLQFREKKIDHNSYWRTTLDEK
                     SRLLEFKGPCXRFFPINKIWAEANIHCPQFTASRKSAKMVSIHSWEESVFVYDLVNSC
                     VPDIPADTCMGLRVHRQEGQFEWSDGSPYGYSYWDRSQPGDGIQKTEQIVEMQWLLLQ
                     WMDLHPDSLLLLFPALKSWNHNTXHRKFPFECRIPSALDLHSSLGSTISSVAGEVPLA
                     WSQHGKCRYSGSTLRV"
ORIGIN      
        1 atgttactca tcaagcacat gatagtgcag aacaatctgg aaaactcaga cctgggaact
       61 tcagcaagtc ttcagttccg ggagaagaag attgatcaca acagctactg gagaactacc
      121 ctggatgaga agtcaagact tttagagttc aaaggtccct gctagagatt cttccccatc
      181 aacaagatct gggctgaagc caacatacac tgccctcagt ttactgccag taggaaatct
      241 gccaagatgg tctccattca cagctgggag gagagtgtct ttgtgtatga cctggtgaac
      301 agctgtgttc ctgacatccc agctgacacc tgtatgggcc ttcgtgtcca tagacaggaa
      361 gggcagtttg aatggtccga tggctcccct tatggctaca gttactggga caggagccag
      421 cctggtgatg gcatccagaa gactgagcag atagtggaga tgcagtggct tttactgcag
      481 tggatggatc ttcacccaga ctctctgctt cttctgttcc cagcactcaa gtcctggaac
      541 cataacacct gacacaggaa gttccccttt gagtgtagaa ttccttccgc cctagacttg
      601 cacagcagtc tgggtagcac catctcttca gttgctggtg aggttcctct ggcgtggtca
      661 caacatggca aatgtcgtta tagtggaagc acgttgagag tatga
//
