LOCUS       XM_039098245            3669 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus C-type lectin domain family 18, member
            A (Clec18a), transcript variant X3, mRNA.
ACCESSION   XM_039098245
VERSION     XM_039098245.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098245.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3669
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3669
                     /gene="Clec18a"
                     /note="C-type lectin domain family 18, member A; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:307851"
                     /db_xref="RGD:1559899"
     CDS             1887..3380
                     /gene="Clec18a"
                     /codon_start=1
                     /product="C-type lectin domain family 18 member A-like
                     isoform X1"
                     /protein_id="XP_038954173.1"
                     /db_xref="GeneID:307851"
                     /db_xref="RGD:1559899"
                     /translation="MKPGKQAGRLREAMSAAPGRTAIQPEPSLWLGNQSRWLGLLLLL
                     LPLLGITWTEVQPPQLPKQVPIVQALSRKESFLILTTHNRLRSQVHPSAANMQRMDWS
                     ESLAQLAQARAALCGTSATPNLAATLRNTPDVGWNVQLLPMGSASFVEVVNVWFAEGL
                     QYRHGSAECAHNATCAHYTQLVWATSSQLGCGWQPCFVDQVATEAFVCAYSPGGNWEI
                     NGKMIAPYKKGPWCSLCTASVSGCFKAWDHAGGLCEVPRNPCRMSCRNLGHLNISTCR
                     CHCPPGYTGRYCQVRCSIQCVHGRFQREECSCVCDIGYGGAQCASEFQLTVLLGPLFG
                     GVLDLTLSASKVHFPFHTCDLRIDGDCFMVSPEADTYYGAKMKCQGKGGVLAQIESQK
                     VQDILAFYLDHLETTNKVTDSDFETKNFWIGLTYKAAKDSFRWTTGEHKSFTSFAFGQ
                     PDNQGFGNCVEMQASAAFNWNDQRCKTRNRYICQFAQKHYSQWEPGP"
ORIGIN      
        1 tcgcagtctt atattaagta gtatttagtg tggttatttg atctactttg tatgttgcta
       61 agtcagatga tacattctgt tgagagaagg tggagtctgt gttcatagag tgctaatctg
      121 cggtttctgt agcctgtgat gtcttagacc tggctttggt tactactgac attagtagga
      181 taagttgaag agtatttctg cttgcattgg ccagccttca ctgctgtgtc aaactacctg
      241 ggattctaag catggatcac aaattcatgg atcacaaact ctggactaca ctgttggaat
      301 ataatgtcat catggatata aggcagtggg ggttggggag gacaggcagt caggtataca
      361 gtgttgtata atacccacag cctcctggac ttctgcctct gatagacggc ctgacaactt
      421 caaactcatt atattaggga gagataactc atcagttaaa gcaaggacca cttttcaggc
      481 aacccagggc ccattcccaa caccaacagc agttcacaac tgtctgtaag tccagtccca
      541 ggggatctga cactctcctt tgattctgca ggcactgcac acacatgaca cattaacata
      601 tatgcaggca aaacacccac aaacacaaaa taaagggaaa aaaatttaaa gttgttacgc
      661 cggtaaaagt tttcctccta tccaagccaa agccagacaa caatgagctt ctgggaccca
      721 ggagcaggaa ttgagtcacc agcatagaac aaagctattg agaattgaac tttaaaagat
      781 ccactgtgta tgaaaatcaa aactctggcg atgcgaaagt acagaccctg aattcactgg
      841 gatctacctt gggtaaatcc ctgagactca ctgtatcctg cttccccata tctgtactag
      901 gttgttgtga tacaaagaag ttacatttat aaacatgctt tgtaaggcct gttaaaaggg
      961 tggctaccag gctggcaaga tgttgcagtg ggaaatggtc tgtgccacca agctggacaa
     1021 cctgctttga cttcttggaa ccacaatagg agaaaagcct ttctctgact gtctgtctgt
     1081 ctgtctgtct gtttctgtct gtttctctct ctctctctct ctctctctct ctctctctct
     1141 ctctctcagg ttgtcctctg acctacacac tacacaacaa acacacacac acacacacac
     1201 acacacacac acacacacac acacacacac gatgtagcgc cctgacaccc gtactcaata
     1261 gcaatacctt ttttatatga atgaaaatgc agctattact aatcacggat aggacctgct
     1321 atggtgatct caggccatct gcttgaggca gaagatcctg aggctctggg tattgtacaa
     1381 cactgtgcac cttgctgcct ggccttgtcc ccattgcctg acatccatga tgccattcat
     1441 attccgttag tgtttctcca gaagtccatg cagcccacct gtgccctagc agaatctcca
     1501 aagaggtgac atctgagaga gtgctgggtc agggaccaca ccaacttcaa aagggcaaag
     1561 tgttagcttg taaggccgtg ctttagaatg gctgagtaac ctgtgtgggc atttgacgat
     1621 ggtctacatg tcagtctttg atttggctat gctagaaatt cagtgatcct ggtgggacta
     1681 tgtaggcttc agctaggccc aaaataccat ggtaatttgc cgcctttctg ctccactgtg
     1741 accttgtcta gaggcagact tgttcacaac aggactcaag tcagccaagg gcatccacca
     1801 caagccctcc tctctgtctg ccttgcccca gtcttagccc aaagtcacat ggcttagcct
     1861 gactccctga gactgtgaat agcttcatga agcctgggaa gcaagccgga cggctgagag
     1921 aagccatgtc tgcagcacca ggcagaacag ccattcagcc cgagccctcc ctgtggctgg
     1981 gaaaccagag ccggtggctt ggtctcttgc ttctgctcct gcctctcctt ggcatcacct
     2041 ggacagaggt gcagccaccc cagctgccaa agcaagttcc cattgtgcaa gccttgagca
     2101 ggaaggagag tttcttaatc ctcacaacac acaaccgtct gcgcagccag gtccaccctt
     2161 ccgcagccaa catgcagaga atggattgga gcgagagcct ggctcaacta gcccaagcca
     2221 gggcagccct ttgtggcacc tcagccactc cgaacctggc agccaccctg cggaacaccc
     2281 cagacgtggg ctggaatgtg cagctactgc ccatgggctc agcctctttt gtggaggtgg
     2341 tcaacgtctg gtttgctgag gggctgcagt acagacatgg gtcggccgag tgtgcccaca
     2401 atgccacctg tgcccactac acccagcttg tgtgggccac ctccagtcag ctgggctgtg
     2461 ggtggcagcc atgttttgtg gatcaagtgg ccacggaagc cttcgtctgt gcctattccc
     2521 ctggaggcaa ctgggaaata aatgggaaga tgatcgcccc ttacaagaaa ggcccctggt
     2581 gttccctgtg cacagccagt gtctcgggct gcttcaaggc ctgggatcat gcagggggcc
     2641 tctgtgaggt tcccaggaac ccatgtcgca tgagctgccg aaatctcgga catctcaaca
     2701 ttagcacctg tcgctgtcac tgtccccctg gctacacagg gaggtactgc caagtgcgct
     2761 gcagtataca gtgtgtgcat ggccgattcc agagagaaga atgttcctgt gtctgcgata
     2821 tcggctatgg cggagcccag tgtgccagtg agttccaact cacggttctt ctcggacccc
     2881 tcttcggtgg ggtgctggat ctgactttat cagcttccaa ggtgcacttt ccctttcata
     2941 cctgtgacct gaggattgat ggagactgct tcatggtgtc tcccgaggca gacacctatt
     3001 atggagccaa gatgaaatgt cagggaaaag gtggggtgtt agcccagatt gagagccaga
     3061 aagtgcaaga catccttgcc ttctacctgg accacctgga gaccaccaac aaggtgactg
     3121 acagtgactt tgagaccaag aacttctgga ttgggctcac ctacaaggca gctaaggact
     3181 ccttccgctg gactactgga gaacacaagt ccttcaccag ttttgccttt gggcagcctg
     3241 acaatcaggg gtttgggaac tgtgtggaaa tgcaggcatc tgccgccttc aactggaatg
     3301 accaacgctg taaaactcga aaccgttata tctgtcagtt tgctcagaag cactattccc
     3361 agtgggagcc ggggccctga gcctggccca acagctctcc tgccagcttc tgaatgcaca
     3421 gaccgtttcc ttgactgctc acctgtggga aacaagtgcc tggctgggac tgaatgccca
     3481 acatcctgag cagtctcaga cctaacgcca tgccgccatg ccatatgctg ggtaggatag
     3541 tgtaggttgg tgtcattatg caggtgaagg caggtacagg gtagaatgag atctgtcatt
     3601 ggatgagaag gaaggatggg cgggagaaaa gttttagaga gggaggagac gggagccagg
     3661 gggagagca
//
