LOCUS       NM_001109415            1088 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus claudin 34E (Cldn34e), mRNA.
ACCESSION   NM_001109415 XM_001057406 XM_006256958
VERSION     NM_001109415.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1088)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On or before Aug 30, 2022 this sequence version replaced
            XM_006256958.4, NM_001109415.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.32576.1,
                                           SRR26360181.72218.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-150               JAXUCZ010000021.1  45627195-45627344   c
            151-214             JAXUCZ010000021.1  45623905-45623968   c
            215-1088            JAXUCZ010000021.1  45620496-45621369   c
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq21"
     gene            1..1088
                     /gene="Cldn34e"
                     /note="claudin 34E"
                     /db_xref="GeneID:680489"
                     /db_xref="RGD:1591711"
     exon            1..150
                     /gene="Cldn34e"
                     /inference="alignment:Splign:2.1.0"
     exon            151..214
                     /gene="Cldn34e"
                     /inference="alignment:Splign:2.1.0"
     exon            215..1088
                     /gene="Cldn34e"
                     /inference="alignment:Splign:2.1.0"
     CDS             237..875
                     /gene="Cldn34e"
                     /codon_start=1
                     /product="uncharacterized protein LOC680489"
                     /protein_id="NP_001102885.1"
                     /db_xref="GeneID:680489"
                     /db_xref="RGD:1591711"
                     /translation="MLLLSKSANCQVGGFALASIAWVLCSISTGLPQWRVWYLNETMF
                     TKPTTAFVGIWRVCIYHENSKPGSVRVCHEYTYHDSFIPLDVRIIQHLLLISNMLGLI
                     GTVTTIFALRNVYTEKVQKNDTYNPFIISAILNIIASISILLAVLFNYFSVIHKAGIA
                     FPPSFHMPLYPSDQRIGIANVVASLCALMFLGSGIILISYTSPTEKQVFPEI"
ORIGIN      
        1 tccagtaata tgccaagtgc tcacaggtga ctgtgaagcc agacccaagg cttgaaggac
       61 acgtgagggg agctgtgttc tcatctgacc ctctgctaca ttgttctacc acattgccga
      121 tcactgattc acttgaagaa aacatatcag gttatcatcc tggttcctaa ttgtcctctg
      181 tttgacatgt gataagtgaa gaagcttgct ttagttgtct cgtgtttgct gtcaccatgt
      241 tgttactcag caaaagtgcc aactgccaag tcggaggttt tgctttggca tccatagcat
      301 gggttctctg cagcatctcc acaggtcttc cacagtggcg agtctggtat ttaaatgaaa
      361 caatgttcac caagcctacc acagcctttg taggaatatg gagagtctgc atttaccacg
      421 aaaacagcaa acctggcagt gtcagagtgt gccatgaata cacctaccat gacagcttta
      481 tccctttgga tgttcgtatc attcaacact tattactgat ctccaacatg ctcgggttga
      541 ttggaacagt caccaccatt tttgctcttc gaaatgtgta tacagagaaa gtacagaaga
      601 atgacactta caatccattc atcatttcag caattctcaa catcattgcc agtatctcta
      661 tcctccttgc tgtcttattc aattacttct ctgtcattca caaagcagga attgccttcc
      721 caccatcttt ccatatgccg ttatacccat ctgatcagag aattggaatt gctaatgtag
      781 tggcaagtct atgtgctctc atgtttttag gcagtggcat tattttaatt tcttacactt
      841 ctcccacgga aaagcaagtg tttcctgaga tttgaaaata catttacagc taacatcact
      901 gtgaaacccc caggagttat agcatgtatt ttgaagacgt ttacataaat tttccaagga
      961 ctcaaaacca cattccaaga acctatgacc aaagatggcc aagatggcct tctcttttct
     1021 gtctactttg tttcattatc ttatttgttg gcttctaaac ttttactaaa taaaatctta
     1081 ttcatgca
//
