LOCUS       XM_002730241            1096 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus claudin 34B4 (Cldn34b4), transcript
            variant X1, mRNA.
ACCESSION   XM_002730241
VERSION     XM_002730241.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002730241.6.
            
            On Jan 21, 2021 this sequence version replaced XM_002730241.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1096
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1096
                     /gene="Cldn34b4"
                     /note="claudin 34B4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100362173"
                     /db_xref="RGD:2318711"
     CDS             278..913
                     /gene="Cldn34b4"
                     /codon_start=1
                     /product="claudin-34-like"
                     /protein_id="XP_002730287.1"
                     /db_xref="GeneID:100362173"
                     /db_xref="RGD:2318711"
                     /translation="MLIKKRYNSQMGGFALTTLAWIICCISIGLPQWRVWHFQDPEVF
                     KPTTAFVGMWRVCTFQHNDNFSNIRICHRYNYHDTFIPLDIRVTQQLLLVASFLGLVG
                     KATTIISLWNVCGGRVRTNTTYNPFGLSGILNIIASSFLCLAVLFNYISIILQEGIVF
                     PPSFNVPSQPDTQEIGSAMALAIIAAVFFLLSGTILLTSTFPREKPMHSKY"
ORIGIN      
        1 caatagaact ctcagaacta gaagaagcca taatatgcca gagctcagag ctgatggtga
       61 aggaacctca aaggacaagt gagaggatcc ctttccttgt cagctccact ggcctctata
      121 gctgattgac ctgccacata atctaccact atcagctagt tcactggaag acagtatttc
      181 tgttgctgca ttgcacacag tcaatgtgaa ggacgttata aagaaggtta aaacttccaa
      241 gtttgctact ggttgctgac tatccactgt gaccatcatg ttgatcaaaa aacgatacaa
      301 tagccaaatg ggaggctttg ctttgaccac attggcttgg ataatttgct gtatctccat
      361 aggcttacct cagtggcgag tgtggcactt ccaagaccct gaggtcttta agcctactac
      421 agcatttgtt ggcatgtgga gagtctgtac tttccagcat aatgacaact ttagcaacat
      481 cagaatatgt caccgataca actaccatga taccttcatt cctttggata tccgagtgac
      541 ccaacaattg ctactggttg ctagttttct tggactggtt gggaaagcca ccaccattat
      601 ttccctttgg aatgtgtgcg gaggaagagt acgtacaaat accacttaca atccatttgg
      661 tctatctgga attctgaaca tcattgctag cagttttctt tgccttgccg tattgtttaa
      721 ctatatatcc atcatactac aggagggaat agtattccca ccatctttta atgtgccttc
      781 ccagccagac acacaggaaa ttggaagtgc catggccttg gcaattatag ctgcagtttt
      841 ctttctatta agtggtacaa ttttgcttac ttcaactttt cctagagaaa agccaatgca
      901 ttctaaatat taaaagtaaa tttttacctt acatacattt aaaatcaaaa gttacctgga
      961 atgatagcat gtgtcaacaa aattttcaaa gaactcaatt tggcctgtga tggaaaatga
     1021 ccatgttgat ctcttataat ttctgtattt cttgtttgat ttattacttg attgctgtat
     1081 tatggattgt caaaaa
//
