LOCUS       NM_001408871            1135 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus claudin 34B (Cldn34b), mRNA.
ACCESSION   NM_001408871 XM_001056750
VERSION     NM_001408871.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1135)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Jun 29, 2022 this sequence version replaced XM_001056750.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.32571.1,
                                           SRR26360181.2259028.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-154               JAXUCZ010000021.1  44402088-44402241   c
            155-234             JAXUCZ010000021.1  44397721-44397800   c
            235-1135            JAXUCZ010000021.1  44396219-44397119   c
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq21"
     gene            1..1135
                     /gene="Cldn34b"
                     /note="claudin 34B"
                     /db_xref="GeneID:680342"
                     /db_xref="RGD:1592987"
     exon            1..154
                     /gene="Cldn34b"
                     /inference="alignment:Splign:2.1.0"
     exon            155..234
                     /gene="Cldn34b"
                     /inference="alignment:Splign:2.1.0"
     exon            235..1135
                     /gene="Cldn34b"
                     /inference="alignment:Splign:2.1.0"
     CDS             260..886
                     /gene="Cldn34b"
                     /note="claudin-34; rCG36429-like"
                     /codon_start=1
                     /product="claudin 34B"
                     /protein_id="NP_001395800.1"
                     /db_xref="GeneID:680342"
                     /db_xref="RGD:1592987"
                     /translation="MLMKNCHHQMGGFALTTVAWLLCCISIGLPQWQVWHYEDPVILK
                     PTVAFVGIWRTCIFHTDSNSSNNRLCHQYSYRDSFVPLYIRINQHLLLVSSFLGLFGK
                     ITTIIALSNVSMGRVRRNATCNPFSLSGILNIIASSFLYLAVLFNYIAIVRKWRVSFP
                     PSFHMPSHPHTQKMGSAMALAIIAAVFFLLSGTICLSSNLGKSPHSKI"
ORIGIN      
        1 taggccagta ctaataggcc aggtgctcat aagccaacaa ggagactcaa aggataaggg
       61 agagtcactg tttccttgtc agctccactg gcatacttta ctgattgccc tgtcacatca
      121 cctaccaaca gttaacttga agacagcaac tgtgtattga tgtgatactg tattgcacac
      181 agccaatgaa aaggaagtaa taaaaaagct gaaaacttcc agacttgctg ctagttcaca
      241 agtattcact gtcaccatta tgttgatgaa aaattgccat caccaaatgg gaggttttgc
      301 tttgaccaca gtggcctggc tactttgttg catatccata ggcctccctc agtggcaagt
      361 gtggcactat gaagaccctg tgatcctcaa gcctacagtg gcttttgtgg gcatatggag
      421 aacctgcatt ttccacactg acagcaactc cagcaacaac agattatgtc accaatacag
      481 ctaccgtgat tccttcgttc ctttgtatat tcgaataaac cagcacttgc tgctggtttc
      541 tagctttctt gggctctttg ggaaaatcac caccattatt gctctttcga atgtgagtat
      601 gggaagagta cggaggaatg ccacctgcaa tccattcagc ctttcaggga ttctgaacat
      661 cattgctagc agctttcttt accttgctgt tttgtttaat tacatagcca tcgtgcgcaa
      721 atggagggtt tccttcccac catctttcca tatgccttcc cacccacaca ctcagaagat
      781 gggaagtgcc atggctttgg caattatagc tgcagttttc tttctactaa gtggcacaat
      841 ttgcctttct tcaaatttag gcaagtcgcc ccattccaaa atttaaaagt aaattactac
      901 ctaacatagc cttgaaatgc cagcaaagat agtgactagt cttccttcat gtgtctatat
      961 aaattttcaa acatcttgaa aggatgccaa ttgtggcctg tgacaaagaa agagtccagt
     1021 tgacttcccc ttatattttt gggcttcttt gtgtcatctt aattcattat ttggattgtg
     1081 ggattttgtt aaataaaaat ctcatttaat gggtagtaat aaatttgtgt tttac
//
