LOCUS       XM_039093200             881 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus claudin 10 (Cldn10), transcript
            variant X3, mRNA.
ACCESSION   XM_039093200
VERSION     XM_039093200.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..881
                     /gene="Cldn10"
                     /note="claudin 10; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 10 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 34 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:290485"
                     /db_xref="RGD:1308027"
     CDS             139..663
                     /gene="Cldn10"
                     /codon_start=1
                     /product="claudin-10 isoform X3"
                     /protein_id="XP_038949128.1"
                     /db_xref="GeneID:290485"
                     /db_xref="RGD:1308027"
                     /translation="MALSSPPPLILPTCGRCYIQACRGLMIAAVSLGFFGSIFALFGM
                     KCTKVGGSDKAKAKIACLAGVVFILSGLCSMTGCSLYANKITTEFFDPLFMEQKYELG
                     AALFIGWAGASLCIIGGVIFCFSISDNNKTPRMGYTYNGPTSVMSSRTKYQGGEGDFK
                     TTGPSKQFDKNAYV"
ORIGIN      
        1 gaaccagcgc gaacgctgct gcagccggca gcatggctag cacggccttg gaaatcatcg
       61 ccttcgtcgt ctccatctcg ggctgggtgc tggtgtcttc cacactaccc accgactact
      121 ggaaggtctc caccatcgat ggcactgtca tcaccaccgc cacttatttt gccaacctgt
      181 ggaagatgtt acatccaggc gtgtagagga ctaatgattg ccgcggtcag cctgggcttc
      241 ttcggttcca tttttgcact ctttggaatg aagtgtacca aagtcggagg ctcggataaa
      301 gccaaagcta agattgcttg cttggctggg gttgtattca tattgtcagg tctgtgttcc
      361 atgacgggct gttccctgta cgcgaacaaa atcacaacgg aattctttga tcccctcttt
      421 atggagcaaa agtatgaatt gggggctgcc ctcttcatcg gatgggcagg agcttctctc
      481 tgcatcattg gcggtgtcat attttgcttt tcaatatccg acaacaacaa aacacccaga
      541 atgggctaca cgtacaatgg acccacgtca gtcatgtctt cccggaccaa gtatcaaggc
      601 ggagaaggag attttaaaac cacaggccct tcaaaacagt ttgataaaaa tgcctatgtc
      661 taaagagctc tggcaagccg cgtctcgagt ttgttgcgca agagaactgt tctcacaatg
      721 gtccttccaa ggctcccctg taattatcac ttaagctgtt tttttttttt taaaatatga
      781 atttgaagaa tgttgattgg atgtaaatgt tcttatagtt atatactaat catttttttc
      841 tgttgtgcct ttctataagg gaaataaaca ggttatttac a
//
