LOCUS       NM_001024294            2150 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus CLK4-associating serine/arginine rich protein
            (Clasrp), mRNA.
ACCESSION   NM_001024294 XM_574705
VERSION     NM_001024294.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Mar 9, 2021 this sequence version replaced NM_001024294.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089090.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                JAXUCZ010000001.1  88384293-88384343   c
            52-169              JAXUCZ010000001.1  88383085-88383202   c
            170-267             JAXUCZ010000001.1  88375099-88375196   c
            268-369             JAXUCZ010000001.1  88374552-88374653   c
            370-449             JAXUCZ010000001.1  88374309-88374388   c
            450-534             JAXUCZ010000001.1  88371249-88371333   c
            535-683             JAXUCZ010000001.1  88370323-88370471   c
            684-780             JAXUCZ010000001.1  88369400-88369496   c
            781-859             JAXUCZ010000001.1  88367669-88367747   c
            860-933             JAXUCZ010000001.1  88367503-88367576   c
            934-975             JAXUCZ010000001.1  88366608-88366649   c
            976-1191            JAXUCZ010000001.1  88365093-88365308   c
            1192-1461           JAXUCZ010000001.1  88364731-88365000   c
            1462-1719           JAXUCZ010000001.1  88363702-88363959   c
            1720-1759           JAXUCZ010000001.1  88363394-88363433   c
            1760-1820           JAXUCZ010000001.1  88363081-88363141   c
            1821-1879           JAXUCZ010000001.1  88362884-88362942   c
            1880-1926           JAXUCZ010000001.1  88362758-88362804   c
            1927-2009           JAXUCZ010000001.1  88361128-88361210   c
            2010-2034           JAXUCZ010000001.1  88360566-88360590   c
            2035-2150           JAXUCZ010000001.1  88360235-88360350   c
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..2150
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /note="CLK4-associating serine/arginine rich protein"
                     /db_xref="GeneID:499390"
                     /db_xref="RGD:1563538"
     exon            1..51
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            52..169
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     CDS             71..2077
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /note="serine/arginine-rich splicing factor 16; splicing
                     factor, arginine/serine-rich 16"
                     /codon_start=1
                     /product="CLK4-associating serine/arginine rich protein"
                     /protein_id="NP_001019465.2"
                     /db_xref="GeneID:499390"
                     /db_xref="RGD:1563538"
                     /translation="MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVH
                     GRACKVHLDSAVALAAESPVNMMPWQGDTNNMIDRFDVRAHLDHIPDYTPPLLTTISP
                     EQESDERKCNYERYRGLVQNDFAGISEEQCLYQIYIDELYGGLQRPSEDEKKKLAEKK
                     ASIGYTYEDSTVAEVEKVAEKPEEEESPAEEESNSDEDEVIPDIDVEVDVDELNQEQV
                     ADLNKQATTYGMADGDFVRMLRKDKEEAEAIKHAKALEEEKAMYSGRRSRRQRREFRE
                     KRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPSPGREEKITFITSFGG
                     SDEEAAAAAAAAAASGAAPGKPPAPPQPGGPAPGRNASARRRSSSSSASRTSSSRSSS
                     RSSSRSRRGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSDGGSRDGHRYSRS
                     PARRSGYAPRRRSRSRSRSGDRYKRGARGPRHHSSSHSRSSWSLSPSRSRSLTRSGSR
                     SQSRSRSRSQSHSQSQSHSPSPPREKLTRPAASPAVGEKLKKTEPAAGKETGAAKPKL
                     TPQERLKLRMQKALNRQFKADKKAAQEKMIQQEHERQEREDELRAMARKIRMKERERR
                     EKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSRSRSPHYRH"
     exon            170..267
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            268..369
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            370..449
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            450..534
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            535..683
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            684..780
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            781..859
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            860..933
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            934..975
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            976..1191
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            1192..1461
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            1462..1719
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            1720..1759
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            1760..1820
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            1821..1879
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            1880..1926
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            1927..2009
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            2010..2034
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
     exon            2035..2150
                     /gene="Clasrp"
                     /gene_synonym="Sfrs16; Srsf16"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgcgggtcgt gagcgcgcgc gagcgcagca gtgggaggcg gcgaccagcc ggtagagaag
       61 cctcagcacg atgtggcacg aggctcggaa gcatgagcgg aaacttcgag gcatgatggt
      121 ggactacaag aagagggcag agcggcgtcg ggaatactat gagaagatta agaaagaccc
      181 cgcccagttc ctgcaggtac atggccgagc ctgcaaggtt cacctggatt ctgcagttgc
      241 cctggctgct gagagccctg tgaacatgat gccctggcag ggagacacca acaacatgat
      301 cgaccgcttt gatgtccgtg cacatctaga ccacatccct gactatacgc ccccactgct
      361 cactaccatc tccccagaac aggagtcaga cgagcggaag tgtaactacg agcgctaccg
      421 aggcctggtg cagaacgact tcgccggcat ctctgaggaa cagtgcttgt atcagatcta
      481 tattgatgag ctgtatggag gcctgcagag acccagcgag gatgagaaga agaagctggc
      541 agagaagaag gcttccatcg gctacaccta tgaagatagt actgtggctg aggtagaaaa
      601 ggtggccgag aagccagagg aggaagagtc accagcagag gaggagagca actcggatga
      661 agatgaggtc atccccgaca tcgacgtgga ggtggatgtg gatgagctga accaggagca
      721 ggtggctgat ctcaataagc aggccacaac ctacggcatg gctgacgggg acttcgtcag
      781 gatgctacgg aaagacaagg aggaggcaga ggccatcaaa catgccaagg ccctggagga
      841 ggagaaagcc atgtactcgg gccgtcgttc acggcgacag cgaagagagt tccgggagaa
      901 gcggctgagg ggccgtaaga ttagccctcc cagttatgcc cgccgagaca gccccaccta
      961 tgacccctat aagcggtcac cttcggaatc cagttccgag tcccgctccc gctctcgctc
     1021 cccgagccca ggccgcgagg aaaaaatcac ttttatcacg agttttggag gcagcgacga
     1081 ggaggcagct gcagcagctg ctgcagccgc cgcatccggg gctgccccag ggaagccccc
     1141 cgcgcctccc caaccgggtg gccccgctcc aggccgtaat gccagcgccc gccgccgctc
     1201 ctcttcgtcc tccgcctcca ggacctccag ttcccgatcc agttcgcgct ccagctcgcg
     1261 ctcccgccgt ggctattacc gttctggccg ccacgcgcgc tctcgctccc gctcctggtc
     1321 ccgctcgcgc tcccgttccc ggcgctattc ccgctcccgc agccgtggac gacggcactc
     1381 agacggtggt tcccgcgacg gacaccgcta ctcacgctcg ccagcccggc gcagcgggta
     1441 cgcgccccgc cgaaggagca ggagccgctc ccgttcaggt gaccgctata agcggggtgc
     1501 ccggggcccc aggcaccaca gcagcagtca tagccgcagc agctggtccc tcagcccttc
     1561 ccgaagccgc agtctgaccc ggagtggaag ccgaagccag agccggagca gaagccgcag
     1621 ccagagccac agccagagcc agagtcactc gccatcgccc ccaagggaga agctgaccag
     1681 gccagcagca tcccctgctg tgggcgagaa gctgaaaaag accgaacctg ccgctggtaa
     1741 agagacagga gctgccaaac ccaagctgac cccacaggag aggctgaagc tgcggatgca
     1801 gaaggctctg aaccgccagt tcaaggcgga taagaaggca gctcaggaga agatgatcca
     1861 gcaggagcac gagcggcagg aacgcgagga tgaactgcga gccatggccc gaaagatccg
     1921 aatgaaggag cgagagcgac gagagaagga gagagaagaa tgggagcgcc agtacagccg
     1981 ccagagccgc tcaccctccc cacgctacag tcgagagtac agttcttccc gcaggcgttc
     2041 gaggtccagg tcccgaagcc cccattacag acattaggca gaagaagagt tgggggctgt
     2101 tatgctgctg ggtttctgta gtgaaataaa agctaacatt atttaatgga
//
