LOCUS       XM_039091226            7810 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cytoplasmic linker associated protein
            1 (Clasp1), transcript variant X1, mRNA.
ACCESSION   XM_039091226
VERSION     XM_039091226.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7810
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7810
                     /gene="Clasp1"
                     /note="cytoplasmic linker associated protein 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 35 ESTs, 3 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:304740"
                     /db_xref="RGD:1310970"
     CDS             432..5357
                     /gene="Clasp1"
                     /codon_start=1
                     /product="CLIP-associating protein 1 isoform X1"
                     /protein_id="XP_038947154.1"
                     /db_xref="GeneID:304740"
                     /db_xref="RGD:1310970"
                     /translation="MEPRMESCLAQVLQKDVGKRLQVGQELIDYFSDKQKSADLEHDQ
                     TMLDKLVDGLATSWVNSSNYKVVLLGMDILSALVTRLQDRFKAQIGTVLPSLIDRLGD
                     AKDSVREQDQTLLLKIMDQAANPQYVWDRMLGGFKHKNFRTREGICLCLIATLNASGA
                     QTLTLSKIVPHICNLLGDPNSQVRDAAINSLVEIYRHVGERVRADLSKKGLPQSRLNV
                     IFTKFDEVQKSGNMIQSANDKNFDDEDSVDGNRPSSASSSSSKAPSSSRRNVSMGTTR
                     RLMASSLGSKSSAAKEGAGAVDEEDFIKAFDDVPVVQIYSSRDLEESINKIREILSDD
                     KHDWEQRVNALKKIRSLLLAGAAEYDNFFQHLRLLDGAFKLSAKDLRSQVVREACITL
                     GHLSSVLGNKFDHGAEAIMPTIFNLIPNSAKIMATSGVVAVRLIIRHTHIPRLIPVIT
                     SNCTSKSVAVRRRCFEFLDLLLQEWQTHSLERHISVLAETIKKGIHDADSEARIEARK
                     CYWGFHSHFSREAEHLYHTLESSYQKALQSHLKNSDSIVSLPQSDRSSSSSQESLNRP
                     LSAKRSPTGSTASRGSTVSTKSMSTTGSLQRSRSDIDVNAAASAKSKVSSSSGSTAFS
                     SAAALPPGSYASLESRHMREDLEYVGLDAGRIRTRRQSSGSTTNVASTSSDSRGRSRA
                     KVVSQSQRSRSANPAGAGSRSSSPGKLLGSGYGGLAGGSSRGPPVTPSSEKRSKIPRS
                     QGCSRETSPNRIGLARSSRIPRPSMSQGCSRDTSRESSRDTSPARGFTPLASRRHSRS
                     TSALSTAESVGQSDRFGLGQSGRIPGSVSAMRVLSTSTDLEAAVADALLLGDARSKKK
                     PVRRRYEPYGMYSDDDANSDASSVCSERSYGSRNGGIPHYLRQTEDVAEVLNHCASSN
                     WSERKEGLLGLQNLLKSQRTLSRVELKRLCEIFTRMFADPHSKIADSEAECEDKEGNL
                     FPSEGSCPRVFSMFLETLVDFIIIHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQK
                     ALDVTRDSFPFDQQFNILMRFIVDQTQTPNLKVKVAILKYIESLARQMDPTDFVNSSE
                     TRLAVSRIITWTTEPKSSDVRKFQRQRSRAGDDVPGRSVPTCSGPGEANLEESCKQAA
                     QIVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLKNSSNAGVGSPSNTIGRTPS
                     RHPSSRTSPLTSPTNCSHGGLSPSRLWGWSADGLSKPPPPFSQPNSIPTAPSHKTLRR
                     SYSPSMLDYDTENLNSEEIYSSLRGVTEAIEKFSFRSQEDLNEPIKRDGKKDCDIVSR
                     DGGAASPATEGRGGSEVEGGRMALDNKTSLLNTQPPRAFPGPRAREYNPYPYSDTINT
                     YDKTALKEAVFDDDMEQLRDVPIDHSDLVADLLKELSNHNERVEERKGALLELLKITR
                     EDSLGVWEEHFKTILLLLLETLGDKDHSIRALALRVLREILRNQPARFKNYAELTIMK
                     TLEAHKDSHKEVVRAAEEAASTLASSIHPEQCIKVLCPIIQTADYPINLAAIKMQTKV
                     VERITKESLLQLLVDIIPGLLQGYDNTESSVRKASVFCLVAIYSVIGEDLKPHLAQLT
                     GSKMKLLNLYIKRAQTTNSNSSSSSDVSTHS"
ORIGIN      
        1 ctcactgcgc cggcgcagtt ggtttctcac tttttttttt tttttttttt tttttaatcc
       61 ccgcaccaag cgcttaacct cattggggtg gaggagaagg cggtggctgt ccggtccgcc
      121 gccgcaagag tagtgaataa tagaattaat ggactgctga attatgaagt atttcagacc
      181 cagttgtaga tcatcactcc gccactctct cctttatcgc ctactagtta tttaaattgg
      241 acttttaata tcctaccagc tgctcttcag acacacatgg tgcattgctg ccattcccgg
      301 gattgcatct ttgaaacaca cgctcttagt agccttcagc aaacaaagag gccacctccc
      361 ggtactgcta ccgggaggga gtcatcctga ccgccctcta gccttggcca gatctggatt
      421 tgaatcctac catggaacca cgaatggagt cctgtctggc ccaggtgctg cagaaggatg
      481 tggggaagcg gctgcaagtt ggccaggaac tcatagacta tttctcagac aaacagaagt
      541 ctgctgacct tgagcatgac cagaccatgt tagataagct tgtggatgga ctcgctacct
      601 cttgggtgaa ctctagcaat tacaaggtgg ttctcttggg catggacatc ctgtcggcat
      661 tggtgactag gctgcaggac cggttcaagg cgcaaatcgg cacagtgttg ccaagtctaa
      721 tagacagact gggagatgct aaggactccg tgagggagca agaccaaact ctgctgctaa
      781 agatcatgga tcaagctgct aatccccagt atgtgtggga cagaatgctc ggaggcttca
      841 aacacaagaa cttccgcaca cgagagggca tctgcctctg ccttattgca acactcaatg
      901 cctctggggc ccagactcta acactaagca agatcgtgcc acatatatgt aacctactgg
      961 gagatcccaa cagccaggtt cgagatgcag caataaacag tctggtggag atttatagac
     1021 atgtaggtga acgtgtgagg gcagacctca gtaagaaagg actgccacag tcccggttga
     1081 atgtcatttt tacaaaattt gatgaagtcc aaaagtctgg aaatatgata cagtctgcaa
     1141 atgataaaaa ttttgatgat gaagattctg tggatggcaa caggccttct tctgccagct
     1201 cctcatcgtc caaggctcca tcaagttccc ggaggaatgt tagcatgggg accacccgta
     1261 ggctcatggc atccagtctt ggatcgaagt cttcagctgc aaaagaaggt gcgggtgctg
     1321 tggatgaaga ggattttatt aaagccttcg atgatgtacc tgtagtgcag atttactcca
     1381 gccgagatct cgaggaatcc ataaacaaaa ttagagaaat tctatcagat gacaaacatg
     1441 attgggagca gagagtaaat gctctaaaaa agattagatc gttactcttg gctggggcgg
     1501 ctgagtacga taacttcttt caacacttgc gtcttctgga cggagccttt aaactctctg
     1561 ctaaggacct gcggtctcag gtagtgcggg aagcttgtat caccttgggg cacctgtcat
     1621 cagttctggg aaataagttt gatcatggag ctgaagccat tatgccaact atctttaatt
     1681 taatcccaaa cagtgccaaa attatggcta cttctggtgt tgtagccgtt aggttaatca
     1741 ttcggcacac tcacatccct cggctgatcc ctgtcataac cagcaactgt acctctaagt
     1801 ctgtcgcagt cagaaggcgc tgttttgaat ttttagattt gcttttacaa gaatggcaga
     1861 cacattcact agaaagacac atatcagtat tagctgagac aataaagaaa ggaatacacg
     1921 acgctgattc tgaagcaagg atagaagcca ggaaatgcta ctggggtttc cacagtcact
     1981 tcagccgaga agcagagcac ctgtaccaca ctttggagtc ctcctatcag aaggccctgc
     2041 agtcccactt gaagaactcg gacagcatcg tgtctctgcc tcagtcagac cgatcctctt
     2101 ccagctctca agagagtctc aaccggccac tttctgccaa aagaagtccc actggcagca
     2161 ccgcatccag aggctctaca gttagtacca agtctatgtc gacgacaggg tctctccagc
     2221 gatctcgaag tgatattgat gtgaacgcag cagccagtgc caaatccaaa gtctcctcat
     2281 cctcaggttc caccgccttc agctctgcag cagcgttgcc tccaggatcc tatgcgtcat
     2341 tagagtccag acacatgagg gaagacttgg agtacgtagg cctggatgca ggtcggatcc
     2401 gcaccagacg gcagagctcc gggagcacca ccaatgttgc ctccacatcc tccgacagtc
     2461 ggggccgcag tcgagccaaa gtggtttcac agtctcagcg atccagatct gctaaccctg
     2521 ctggtgctgg cagccggtca agttcccccg ggaagctttt gggaagtggt tatggtggac
     2581 tcgctggggg ctcctcaaga ggcccacctg taacaccatc ttcagagaag agaagcaaga
     2641 tccccaggag tcagggatgc agccgagaaa caagccctaa ccggattgga ttagcacgga
     2701 gcagccgtat cccccgaccc agcatgagtc aggggtgcag ccgcgatacc agccgtgaga
     2761 gcagccgaga tacaagccct gctcggggct tcacaccact cgcctctcga cgtcattcca
     2821 ggtccactag tgctctctcc actgctgaat ctgttgggca gtcagatcgg tttgggctgg
     2881 gccagtcagg acggatccct ggttctgtga gcgccatgcg agtcttgagt accagcacag
     2941 acctggaagc cgctgtggcc gacgctctgc tgttaggaga cgccaggagc aagaagaagc
     3001 ctgtgaggag gaggtacgag ccctacggaa tgtactctga tgatgacgcc aacagtgatg
     3061 cctctagcgt gtgctctgag cgctcatacg gctccaggaa cggtggcatt ccccattatc
     3121 tgcggcagac tgaagatgta gcagaggttc tcaaccactg tgccagttcc aactggtcag
     3181 aaaggaaaga ggggcttcta ggcctgcaga acttgctgaa gagccaaaga acactgagtc
     3241 gagtagaatt gaagagactg tgtgagattt tcacccgaat gtttgctgac cctcacagca
     3301 agattgctga ttcagaagca gaatgtgagg ataaagaagg aaatttgttt ccatcagaag
     3361 gctcttgtcc aagagttttc agtatgtttt tggagaccct tgtggatttt ataatcattc
     3421 ataaggatga cttgcaagac tggctctttg tccttctcac acaactactt aagaaaatgg
     3481 gagcagattt acttggatct gtgcaagcga aagttcagaa ggctctagat gtcaccaggg
     3541 attcctttcc atttgatcaa caatttaaca ttttgatgag atttattgtg gatcagactc
     3601 aaactccaaa cctcaaggtc aaagtggcga tcctgaaata catcgagtct ctggccagac
     3661 agatggaccc cacagatttt gtaaattcca gtgaaacaag acttgctgtt tctaggatca
     3721 taacatggac tacagaaccc aagagttcag atgtgagaaa gttccagcgt cagcgtagtc
     3781 gagcagggga cgatgtccct ggtaggtcag tccccacctg ctccgggcct ggagaagcaa
     3841 acttggaaga aagttgtaaa caggcagcac agattgtgct catctctctg ttcgaactga
     3901 acactcctga atttaccatg ttacttggtg ccttgccaaa aacattccag gacggtgcca
     3961 ccaaactcct gcataaccac cttaagaact ccagtaacgc tggtgtggga tctccaagca
     4021 ataccattgg ccggacacct tcccgacacc ccagtagcag gaccagcccc ttgacctcac
     4081 ccaccaactg ttcccatggg ggactatctc caagtcggtt gtggggttgg agtgccgacg
     4141 ggctatcgaa gcccccacct cccttttctc agcctaactc cattcccacc gctccctccc
     4201 acaagactct caggcgctct tactctccca gcatgctgga ctatgacacg gagaacctga
     4261 actctgagga aatctacagc tctttgcgtg gagttacaga agccatcgag aagttcagct
     4321 tccgaagcca ggaggatcta aatgagccaa tcaagcgaga tggcaagaag gattgtgata
     4381 tcgtgtcccg agatggagga gcagcctcac ccgccaccga gggccgggga ggtagtgagg
     4441 tagaaggagg caggatggct ttggacaaca agacctccct gctcaacaca cagcctccac
     4501 gtgcctttcc ggggccaaga gcacgggagt acaacccgta tccctactct gacaccatca
     4561 acacctatga caagacggct ctgaaggaag cagtgtttga cgatgacatg gagcagctcc
     4621 gagatgtgcc cattgaccac tcggacctgg tggctgactt gctgaaagag ctgtccaacc
     4681 acaacgagcg tgtggaggag cggaagggcg cactcctgga gctgcttaag atcaccaggg
     4741 aggacagcct gggcgtgtgg gaggagcact tcaagaccat cctgctgctg ctgctggaaa
     4801 ctctcggaga caaagaccat tccattcgag ctctggcact gagagtttta cgggagattc
     4861 tgagaaacca gccagcaaga ttcaaaaact acgcagaact gacgatcatg aagactctgg
     4921 aagcccacaa agactcccac aaggaggtgg tgagagcagc tgaggaagct gcgtccacac
     4981 tagccagctc aatccacccg gagcagtgca tcaaagtgct gtgtccaatc atccagacag
     5041 cagactaccc catcaacctg gctgccatca agatgcagac aaaagtggtg gagaggatta
     5101 ccaaggagtc cttgctgcag ctccttgttg acatcatccc cggcctgctg cagggttacg
     5161 acaacactga gagcagtgta cggaaagcca gcgtgttttg cttagtggca atctattccg
     5221 taatcggaga agatctgaaa cctcacctcg cacagctcac ggggagcaag atgaagctgc
     5281 tgaacttata tataaagagg gcccagacta ccaacagcaa cagcagctcc tcttctgacg
     5341 tgtctacaca cagctagtgg ccgtgccagt ctgtgcagaa cacacattgg tggtgcctct
     5401 gagacgctcc atcagctgcc tagtccaccc aaggaggcca cacataattt attacaatca
     5461 gtattttggt cccttccagc ttttgtgtag aactttgctg gtattgaatg taacggaagc
     5521 aaggcctgtt atgcagtctc cctagaaaca agaggactga gaaatgaaga gccatatgtg
     5581 cacgtgtctt gcaccacctg ctgacatcac caaaccatgg cgggcacagc tcttagagac
     5641 cagagctctc tagccagtgc ttggtgcaca gacttgggtg gtttggggta ttgctgtgtg
     5701 ttctttatgc ttatgttctt agagtgtggt cagatgggac aagacccctc ctgttttcaa
     5761 tgacatggag aaaggtcgtg tgtgtgttta ggttgtatct tagagactct gtcaaagtgg
     5821 aactgcagtc tgggcaagaa aaggacaaca acctggaact ggcctctcaa caagcgtgag
     5881 gggttggttt cttgtgcaga gggagccgac ttccctgcct tgggaataga atcagtaatg
     5941 ccaccagagt tctcacggtt gcattaaaga aaagatggct gtaaagcacc aaagttggaa
     6001 ccagacttgt tcagtgccca gggacgtgct ggccacacct cttgaagcaa ttatgggaga
     6061 ctctggctaa atagatttta aataaaatcc ctaagccaaa tgacagttct ttatgcaatc
     6121 atgcaaactt tcctaggctg gccttggatt tggtatcctc ctgcctcagc cacttaagtg
     6181 ctggcattat agatatgggc cacattccca gaaaaagcct gtttgtagca ttaatttttg
     6241 caaagcatgt gctcttctag tgcagagccc actgtaacta ccagagctga aagcagaggt
     6301 tgggccggtg agttctccct ccagcactct gtttctctga ccctccaaat gacagagtcg
     6361 ggcatggtgg ctcatgcctt taatcccagc actcaacagg cagaggcagg cggatctctg
     6421 tgagttcgag gacagccagg gctacctggt aagaccctgt ctggaaaaac aatcaaaata
     6481 agagataggg aggttgggaa agacccatgg gaaggaaata gacactgaaa atgaaggtcc
     6541 ctaatgtgtg catgtgtgcg tgcgtgcgtg catgtgtgta tgtgtgtgtg tgtgtgtgtg
     6601 tgtgtgacat ctaactgtcc cactctgctg ttcggagaac tcgggtgcat tttaagggat
     6661 ttgctattat tgactgactt gggctcagaa catagcagga ccagacctta ctttcagtta
     6721 aaaaaacaaa aaatcctgtc tgttaagggt tcattgatga gaatccttct caccgtccac
     6781 taggatccct cagtgtttta ccaccgcctt ttagacaggt gcacccaggc caggttacgt
     6841 aggtgaactc cctcccatgc ctgatgcagt taggaaggcc ctgctctggc attctctgcc
     6901 ccactgtaac tggacagttc agaacgttgc ctaagatcct cacagcacac acaaagggcc
     6961 agcccggagt gtcacgtgcc ctcctccagt ctgagtagag agaacacagt catttccctc
     7021 tcctgggctc cacctgaaca ctgctgcctg aagtgaggag actcgcatgc cgccaccacc
     7081 tcatggaggg caactgcgcc tactgccgct ctctgaaccc tgacagctac agctgccttg
     7141 ccttgcctcc acctccccga aggactctgt tcaaagcacc tagaccctga aggactcttc
     7201 acagcaccca gaattgtgtt tgcctcccca tctatctgac tatccagggc cttgaaaccc
     7261 cctaccctgg ggaaccgctc acctgacttc ctgcttcctg gcaagctgct ccttcctctg
     7321 ctggacaggc gctttccagg tgcactcatg tgctgtgcgg accgggtgcc cacagatggc
     7381 ctgggctagc cttatctatg gctcacaact agcttttcaa cacctgtgca ggtaatcagc
     7441 aggtttgtct cctacatcta ttgttccttt ctctgccacc cttatggaaa ctcacacttt
     7501 aaaggaaggc aaattagaac tttatagacc ccccaaccag gacactgcta acaattcgga
     7561 agagagaagt gctctgaaaa caatcaagca ccaggagagc tcacacgcat ggtccctgcg
     7621 cccccagatt gggtggtgtt tgttttgggt ttttttgggg ctttttcatg ttacatccat
     7681 atctgtattt atatcttatt tgtttcacct ccaagtgtat catggcaaat gtacagattt
     7741 ttttgttgtt gttgttaata atgtgctagg atttgctaaa aaagaaaatt aaaaaaaaaa
     7801 aaaaaaagcc
//
