LOCUS       XM_039106801            7366 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cytoskeleton associated protein 5
            (Ckap5), transcript variant X3, mRNA.
ACCESSION   XM_039106801
VERSION     XM_039106801.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7366
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7366
                     /gene="Ckap5"
                     /note="cytoskeleton associated protein 5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 71 ESTs, 2 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 51 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:311191"
                     /db_xref="RGD:1563596"
     CDS             788..6910
                     /gene="Ckap5"
                     /codon_start=1
                     /product="cytoskeleton-associated protein 5 isoform X1"
                     /protein_id="XP_038962729.1"
                     /db_xref="GeneID:311191"
                     /db_xref="RGD:1563596"
                     /translation="MGDDSEWLKLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSP
                     EWSKYLGLIKKFVTDSNAVVQLKGLEAALVYVENAHVAGKTTGEVVSGVVSKVFNQPK
                     AKAKELGIEICLMYVEIEKGESVQEELLKGLDNKNPKIIVACIETLRKALSEFGSKII
                     LLKPIIKVLPKLFESRDKAVRDEAKLFAIEIYRWNRDAVKHTLQNINSVQLKELEEEW
                     VKLPTGAPKPSRFLRSQQELEAKLEQQQSAGGDAEGGGDDGDEVPQIDAYELLEAVEI
                     LSKLPKDFYDKIEAKKWQERKEALEAVEGLVRSPRLEAGDYAELVKALKKVVGKDTNV
                     MLVALAAKCLTGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVVQALQEAIDAIFLTT
                     TLQNISEDVLAVMDNKNPTIKQQTSLFIARSFRHCTSSTLPKSLLKPFCAALLKHIND
                     SAPEVRDAAFEALGTALKVVGEKTVNPFLADVDKLKLDKIKECSEKVELVHGKKSGLA
                     AEKKESKPLPGRAAASGAAGDKDTKDVSGPKPGPLKKAPATKAGGPPKKGKTTAPGGS
                     ASSGTKNKKGLETKEIAEPELSIEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQ
                     KAVELMERSEMPCQALVKMLAKKPGWKETNFQVMQMKLHIVALIAQKGNFSKTSAQIV
                     LDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNPKNQSETLNWLS
                     NAIKEFGFSELNVKAFISNVKTALAATNPAVRTSAITLLGVMYLYVGPSLRMIFEDEK
                     PALLSQIDAEFQKMQGQSPPAPTRGISKHSTSGTDEGDDGDEPGDGSNDVVDLLPRVE
                     ISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEAKFIQPNIGELPTALKGRLNDSNK
                     ILVQQTLNILQQLAVAMGPNVKQHVKNLGIPILTVLGDSKNNVRAAALATVNAWAEQT
                     GMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPMLRSTPTDLILCVPHLYSCLEDR
                     NGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKANMPSKPAAPS
                     KAVSKPMGGSAPAKTQPIPAPVEDSVSNTMEAKPDPKKAKAPGVSSKAKSAQGKKVPS
                     KTTLKEDDDKSGPIFIVVPNGKEQRMRDEKGLKVLKWNFTTPRDEYIEQLKTQMSSCV
                     AKWLQDEMFHADFQHHNKALAVMVDHLESEKDGVISCLDLILKWLTLRFFDTNTSVLM
                     KALEYLKLLFTLLSDEEYHLTENEASSFIPYLILKVGEPKDVIRKDVRAILNRMCLVY
                     PASKMFPFIMEGTKSKNSKQRAECLEELGCLIESYGMNVCQPTPGKALKEIAIHIGDR
                     DNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDMSMLEERIKRSAKRPSAVPVKQAE
                     EKPQRTQNINSNANMLRKGPAEDMSSKLKIMYRTYRIQARSMSGHPEAAQMVRREFQL
                     DLDEIENDNGTVRCEMPELVQHKLDDIFEPVLIPEPKIRAVSPHFDDMHSNTASTINF
                     IISQVASGDISTSIQALTQIDEVLRQEDKAEAMSGHIDQFLIATFMQLRLIYSTHMAD
                     EKLDKDEIIKLYSCIIGNMISLFQIESLAREASTGVLKDLMHGLITLMLDSRIEDLEE
                     GQQVIRSVNLLVVKVLEKSDQTNILSALLVLLQDSLLATASSPKFSELVMKCLWRMVR
                     LLPDTINSINLDRILLDIHIFMKVFPKEKLKQCKSEFPIRTLKTLLHTLCKLKGPKIL
                     DHLTMIDNKNESELEAHLCRMMKHSMDQTGSKSDKETEKGASRIDEKSSKAKVNDFLA
                     EIFKKIGSKENTKEGLAELYEYKKKYSDTDIEPFLKNSSQFFQSYVERGLRVIEMERE
                     SKGRIPTSAGISPQMEVTCVPTPTSTVSSLGNTNGEEVGPSVYLERLKILRQRCGLDN
                     TKQDDRPPLTSLLSKPAIPPVASSTDMLHSKLSQLRESREQHQHSDLDSNQTHSAGTM
                     TSSSSTANIDDLKKRLERIKSSRK"
ORIGIN      
        1 ttttaagaac ttccttttaa agtacataat tgcatatacc aattgcattt gtatacaata
       61 ttcctttgct tacatagact tgcgaattct tagggaattt ttgataggcc attcataaga
      121 ggggaaagtt atcttagttt ttttgcctcc tagtaccatc ctacctatct gatattacct
      181 aggagccttc ctttagctgt gaaggaagtc tgtgaaagga caaggggaag cattgaaagc
      241 tgctagaatt tccaagtctt tctgtagcaa tttgaaaatt gctacttctt agggaagtta
      301 atggggggaa aaagcagctt catgatttac tctgatggtt tgattattgt ttaatcaccc
      361 ttcgaaaact ttagaattaa tggtattggg aactagtcat ctcctttatt tctgtgatat
      421 tatctttatt actaccaaac cagagatcca cttccaagtt gttccattat ttatctccta
      481 ctttggaaaa cctctgagct agaggcagca ccctgggtct acagacctct cggtaaaggt
      541 cgctgtggcc cctttaagcg ttctgtgtgc gtgcaaagga gcattgaggg tggggcgggc
      601 actcttgaca gcggtgctcc tgtccccgcc ctgtaggagg cggttcccag cagctgactt
      661 accaatgccg ctgcctcccg cctgctaccg ggtattcctg ctgatcctgc acggacatat
      721 attagggtcg acctcgccct gctagggtag cgagtacttt taactccaag agaaaactag
      781 aagcacaatg ggagatgata gtgagtggtt gaaactacca gttgatcaga aatgcgaaca
      841 caagctgtgg aaagcaagat taagtgggta tgaagaggcc ctgaagatct tccagaaaat
      901 aaaggatgaa aagagtccag aatggtccaa atacttagga ttaatcaaaa aatttgtcac
      961 agattccaac gcagtggttc aattgaaagg actagaagct gcacttgtct atgttgaaaa
     1021 tgctcatgtt gcaggaaaaa caacaggtga agttgtatcg ggtgtcgtaa gtaaagtctt
     1081 caaccaacct aaagccaaag ccaaggagct aggcatagag atttgcctca tgtacgtaga
     1141 gattgagaaa ggagagtctg tacaagaaga gctcctgaaa ggcctggata ataagaaccc
     1201 caagatcata gtggcctgta tagaaacact gaggaaagcc ttaagtgaat ttggttccaa
     1261 aatcatctta ctaaagccaa ttattaaagt gttgccaaaa ctatttgaat ctcgagacaa
     1321 ggctgttcgg gatgaagcca aactatttgc tatagagatt tatcgatgga atcgagatgc
     1381 tgtgaaacac acattacaaa atataaattc tgtccagttg aaagaattag aagaagagtg
     1441 ggtcaagctg ccaacaggtg ctcctaagcc aagtcggttt ctgcgttccc aacaagaact
     1501 ggaagctaaa ctggaacagc aacagtcagc gggtggagat gcagaagggg gtggtgatga
     1561 tggtgatgag gtaccacaga tagatgctta tgagcttttg gaagcagtag agatcctttc
     1621 caaacttccc aaagactttt atgacaaaat tgaggcaaaa aaatggcaag agaggaaaga
     1681 agctctggag gctgtagaag ggctggtgag aagccccaga ctggaagccg gcgactacgc
     1741 agagttagtc aaggcgctga agaaggttgt tggaaaggac accaatgtca tgttggtagc
     1801 tttggcagca aaatgtctta ctggcttagc tgttggacta agaaagaaat ttggacaata
     1861 tgcaggacat gttgtgccaa caattttgga aaaattcaaa gaaaagaagc ctcaagtagt
     1921 gcaagccctt caggaggcca ttgatgccat cttcctcact accacactac agaacatcag
     1981 tgaggatgtt ttagcagtaa tggataataa aaaccccacc atcaagcagc agacatcact
     2041 ttttattgca agaagctttc gtcactgcac ttcctctaca ttgccgaaga gtctactaaa
     2101 gcccttttgt gctgctctcc ttaagcacat caatgattct gctcctgaag tcagagatgc
     2161 tgcgtttgaa gcactgggta ctgctttgaa agtggttggt gagaaaacag taaatccatt
     2221 tttagctgat gttgacaaac tgaaacttga taagatcaaa gagtgttcag aaaaagtaga
     2281 actggttcat ggtaaaaaat ctggacttgc agctgaaaag aaggaatcta agcctctacc
     2341 tggaagggct gctgcatcag gggctgcagg ggacaaagac acaaaggatg tttcgggacc
     2401 caaaccagga ccgttaaaaa aagcacctgc tactaaggct ggtggaccac ctaagaaagg
     2461 caaaacaact gcaccaggtg gttcagcaag ttctggaaca aagaataaga aaggattgga
     2521 gaccaaagaa atagcagagc cagaactctc aattgaagta tgtgaagaaa aagcttcagc
     2581 tgttcttcct cccacctgta ttcaacttct agatagtagc aactggaagg aaaggctggc
     2641 ctgtatggaa gagttccaaa aggctgttga actaatggag cgaagtgaaa tgccttgcca
     2701 ggcattggtg aagatgctcg caaaaaaacc tggatggaaa gaaactaatt ttcaggtcat
     2761 gcagatgaag cttcacattg ttgccttgat tgcccagaag ggaaattttt ctaaaacttc
     2821 tgctcagatt gtattagatg gccttgtaga caagattgga gatgtgaaat gtgggaacaa
     2881 tgcaaaagaa gctctgacag cgatagctga agcatgtatg ttgccctgga cagctgaaca
     2941 ggtgatgtca atggccttct cacaaaagaa tcccaagaat cagtcagaaa ctctaaactg
     3001 gctatcaaat gcaataaaag aatttggatt ttctgaattg aatgtcaaag ctttcattag
     3061 caatgtgaag actgcccttg ctgcaacaaa tccagctgtg aggacttctg ccatcaccct
     3121 gcttggtgtg atgtatctgt atgtcggtcc ttctttgaga atgatctttg aggatgagaa
     3181 gcctgccctc ctatcccaga tagatgcaga atttcaaaag atgcagggac aaagcccacc
     3241 cgctccaacc agaggaattt ctaagcacag cacaagtggt acggatgaag gagatgatgg
     3301 agatgaacca ggtgatggga gtaatgatgt tgttgatctt ttgccaagag ttgagatcag
     3361 tgacaaaatt acttcagagt tggtgtctaa gattggtgac aagaattgga agatcaggaa
     3421 agaaggccta gatgaagtgg caggtattat caatgaagca aaatttatcc aaccaaatat
     3481 aggtgaactt ccaactgcct tgaagggtcg actgaatgat tcaaacaaaa tcttggtgca
     3541 gcaaaccttg aatatccttc agcaactggc agtagccatg ggtccaaacg tcaagcagca
     3601 tgtaaagaac ttaggcatcc ctatccttac tgttcttgga gatagcaaga acaatgttcg
     3661 agctgctgcc ctagcgactg tgaatgcttg ggcagaacaa actggcatga aagaatggct
     3721 ggagggagaa gatctttctg aagaacttaa aaaagaaaat cctttcttga ggcaagagct
     3781 tctgggatgg ctggcagaga aactgcctat gcttcgctcc actcccacag atcttatcct
     3841 ttgtgttcct catctgtatt cctgtctaga agaccgaaat ggagatgtac ggaagaaggc
     3901 acaagatgct ttgccgttct ttatgatgca tttaggatat gaaaagatgg ctaaagctac
     3961 tgggaaacta aagccaactt ctaaagatca agtactggcc atgctagaaa aggccaaagc
     4021 taacatgcca tccaagccag ctgcaccttc taaggcagtg tccaaaccaa tgggaggctc
     4081 agctccagcc aaaacccagc ctataccagc acctgttgaa gattctgttt ccaacaccat
     4141 ggaagctaag cctgatccaa aaaaggctaa agctccggga gtttcctcca aagcaaagag
     4201 tgcacaaggg aagaaagtgc caagcaaaac caccttaaag gaagatgatg ataaatctgg
     4261 gcctattttc attgttgttc caaatggaaa ggaacaaagg atgcgagatg agaaaggatt
     4321 gaaggtgcta aagtggaatt ttactacccc acgtgatgaa tatattgaac agctgaagac
     4381 ccagatgtct agctgtgtgg ctaaatggtt acaagatgaa atgtttcatg cagattttca
     4441 gcatcacaat aaagccctgg ctgttatggt tgatcacttg gaaagtgaaa aagatggtgt
     4501 catcagctgc ttagatctta tcttaaaatg gcttaccctc cggtttttcg acaccaatac
     4561 aagtgtccta atgaaagcac tggaatattt aaaattgctc ttcacgctcc tgagtgacga
     4621 agagtatcat ctcactgaga atgaagcatc ctcctttatc ccctatctca tcctcaaggt
     4681 tggagaacca aaggatgtca ttcgtaaaga tgtccgtgct atcctgaacc ggatgtgcct
     4741 tgtctaccca gccagcaaaa tgttcccctt catcatggaa ggaactaagt ccaaaaactc
     4801 taagcagaga gcagagtgcc tggaagagct aggttgctta attgagtcct atggtatgaa
     4861 tgtttgtcag ccaaccccag gaaaagcctt aaaggagata gctattcaca taggagaccg
     4921 agacaatgct gtacggaatg ctgccctcaa caccattgta acagtgtaca atgtgcatgg
     4981 agatcaggtg ttcaaactga ttggaaatct ttctgagaag gacatgagca tgcttgagga
     5041 gaggataaag cggtcagcaa agagaccttc tgctgtaccc gtgaaacagg ccgaagagaa
     5101 acctcagcgc acacagaata taaactctaa tgccaacatg ctacgcaagg gaccagctga
     5161 ggacatgtcc tccaaactta aaattatgta tcgcacttat aggattcaag ctcgaagcat
     5221 gagtgggcat cctgaagcag ctcagatggt tcgccgagaa ttccagctgg atttagatga
     5281 gattgaaaat gataatggta cagtccgatg tgaaatgcca gagcttgtcc agcacaaact
     5341 tgatgacatt tttgagcctg tccttattcc tgaacctaag atccgggctg tttctccaca
     5401 ttttgatgac atgcacagta atacagcatc cacaatcaat ttcattatct cccaagtagc
     5461 cagtggtgac atcagcacaa gtatccaagc tctgacacag attgatgagg tcctgaggca
     5521 ggaagataaa gctgaagcta tgtctggcca cattgatcag tttctgatag caaccttcat
     5581 gcagctaaga ctcatctaca gcacacacat ggcagatgag aagttggaca aggatgaaat
     5641 catcaagttg tatagctgta tcattggcaa catgatttcg ctatttcaga tagagagcct
     5701 ggcccgggag gcctccactg gagtgctgaa agacctgatg cacggcctaa tcaccttaat
     5761 gctggattct cggattgaag atctggagga aggacagcag gtgattcgtt ctgtgaacct
     5821 cttggtggtg aaggttttgg agaaatcaga ccagaccaat atcctcagtg ccctgcttgt
     5881 tttacttcag gacagcttgc tagcaacagc tagttctccc aaattctcag agcttgttat
     5941 gaagtgtcta tggagaatgg ttcgactatt gcctgacacc atcaacagca ttaacctaga
     6001 ccgaatcctt ctggacatcc acattttcat gaaggtcttt cccaaagaga aattgaagca
     6061 atgcaaaagt gaatttccta taaggactct aaagaccctt ctccatactt tatgcaaatt
     6121 aaaaggacct aagatcctag accaccttac aatgattgat aataagaatg agtcagaact
     6181 ggaggcccac ctgtgccgga tgatgaagca cagtatggac cagactggga gcaagtctga
     6241 taaggaaaca gaaaagggag cttcccgaat agatgaaaaa tcatcaaagg ccaaagtaaa
     6301 tgatttctta gctgagattt ttaagaagat tggctctaaa gagaacacta aggagggcct
     6361 agcagagtta tatgaatata agaagaaata ttcagatact gacattgaac catttctgaa
     6421 aaattcctca cagttctttc agagttatgt tgagagaggc cttcgggtga ttgagatgga
     6481 gagggaaagc aaaggccgca ttcccacttc agcaggcatt tcccctcaga tggaggtcac
     6541 atgtgtgccc acccccacaa gcacagtgtc ctctctaggt aacacaaatg gagaagaagt
     6601 ggggccatct gtctacctgg aaaggctaaa aattctccgg cagcggtgtg gtcttgacaa
     6661 cacaaagcaa gatgaccggc ctccactgac ctctttgctc tccaaaccag caattcctcc
     6721 agtcgcctct tccacagaca tgctccacag caagctctca cagctccggg agtcccggga
     6781 gcagcaccag cactcagacc tggattccaa ccagacccac tctgcaggaa ccatgacctc
     6841 ctcctcctcc acagctaaca tcgatgactt gaaaaagaga ctggagagaa taaagagcag
     6901 tcgcaaatga agctgcccat ccctcagcac tctgcagcgt tagtttacta atctagaagt
     6961 cctatagtgt gaagcggcca ctgcaggcct cattgtacac aaactggttg tatggatcag
     7021 actgcagatg gggaagagca gtggcagctc aagtctgcac atgctctgct tctggaagac
     7081 tgactgtggg ttaggttagt gtacagactt ctaaacagct gctccctcag ctcagagtag
     7141 gttccatatc tttttttgtt ttgttttaat ggctcatttg taaaattgtc ctaatttttc
     7201 ctagctttca gccattagaa actcttttaa tagttccttt tgagttgtga gctcttcttc
     7261 tgtagccctg aagggacact gtattctgta tgaatgcatg gcatgagaca actaatttaa
     7321 gagtctttta taaataaagt ttgcattaac tatacccatt tcccaa
//
