LOCUS       XM_001057508            3365 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cytoskeleton associated protein 2-like
            (Ckap2l), transcript variant X1, mRNA.
ACCESSION   XM_001057508
VERSION     XM_001057508.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001057508.8.
            
            On Jan 21, 2021 this sequence version replaced XM_001057508.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3365
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3365
                     /gene="Ckap2l"
                     /note="cytoskeleton associated protein 2-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 ESTs, 4 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 168 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:680515"
                     /db_xref="RGD:1590645"
     CDS             138..2372
                     /gene="Ckap2l"
                     /codon_start=1
                     /product="cytoskeleton-associated protein 2-like isoform
                     X1"
                     /protein_id="XP_001057508.3"
                     /db_xref="GeneID:680515"
                     /db_xref="RGD:1590645"
                     /translation="MVGPGPAASAAAEERWQKLQEYLAAKGKLKDPNTKPYLKAKNIC
                     PKPPSSKYTPGPKKDVSNHVVLPGKTTKPINIKLQAKPANITGSQKPESMPPKLPSKG
                     LTPRCFPSNSDYKQSSKPQQQHKTVPSTAGLSRKPRQSPDTQELKAKQQQEARGTAKC
                     TDPVADTHAEKQSLDGFLDETNKENLPRTLLKPKKPDSDLHSIRKPKTGSSNQTQRSL
                     APKQISSKSSVTHTALKDRANTQLIRNTQTRAQPGKSQRLPTADSSRPRGKPSQTAPS
                     YSVSAHYKTQTLKKPVIKNTQDIMVNRVRSGRPNETKVQPCPATEQRVKHTKPSSHLS
                     VLQGGHNSRHLNMQQDQKPVQPCLGPRTSCILQKSRAISQRPNLMTGDFNSVIPSTPN
                     IRANKTLNSKYSSTFQQKAQTVDSKFKRFPPQSHFLNKTAPRTQASTTAASRKGAPSV
                     TQTHPHVKKPEGEDRRKQLEEWQKSKGKTYKRPPMIFKTRRKVIEEMNTSFWKSIERE
                     EEEKTAQLELSRKINSTLTECLRLIEEGVLPNEIFTVVSSIPEAEKFAKFWVCKAKLL
                     ASKGPFDALGLYEEAIQNGAAPIQELQEVLNILQDTSRSAEAVTSDSSAAGTNTTSAE
                     ELAKEDDSEQPCPPLIERERAPAAPRIPMVEWDNPGIKLQVAPIPRICGMPEVQDMKL
                     ITPVRRSARIERTLASYPEMLQERDIVVASLNELLEVDNTECFVFRENEALPVTLGFE
                     ILES"
ORIGIN      
        1 tgttatcccg ccctccccgc tttcctattg gtgaatttca aagtcgcgaa agccaatagg
       61 agcgtccaga cgggcgcccg gctctcgtac cagaacaagg cgcgcccttt gaagaaagaa
      121 actgtcacgg tagagtcatg gtggggcccg gccccgctgc cagcgcagcc gcggaagaac
      181 ggtggcaaaa gctccaggag tacctagcag ccaagggaaa gctgaaggac cccaacacca
      241 agccttatct aaaagccaag aatatctgcc ctaaaccacc atcttctaaa tatactcctg
      301 gacctaaaaa agatgtttcc aatcatgttg ttttgcctgg caaaactaca aaacccatca
      361 acattaaact ccaggctaaa ccagccaata tcacagggtc ccagaagcca gagtcgatgc
      421 caccaaaact tccaagcaaa gggctcacgc caagatgttt tccttctaac tcagactata
      481 agcagtccag caagcctcag cagcaacata aaactgtgcc atccactgca ggactgtcaa
      541 gaaaacccag gcagtcccct gatacacagg aattaaaagc caaacagcaa caggaagctc
      601 gaggaacagc taagtgtaca gatcctgtgg ctgacaccca tgctgaaaag caatctttgg
      661 atggctttct agatgaaacg aacaaagaaa acttgccccg aaccttgcta aaacctaaaa
      721 agccagattc tgacttacat tctataagaa agccaaaaac tggctcttct aatcaaactc
      781 agagaagtct ggctcctaaa cagatctcaa gcaaaagttc agttactcat actgctctga
      841 aagacagagc caacacacag ctcattagaa acacacaaac cagagctcag ccggggaagt
      901 ctcagcgact ccctacagca gattcatcgc gaccaagagg aaaaccctca caaacagctc
      961 cctcttactc cgtttcagcc cattataaga ctcaaacatt gaagaaacca gtgatcaaga
     1021 acacacagga tataatggtt aacagggtta gatctggaag accaaatgaa actaaggtac
     1081 agccttgccc tgctactgaa caaagagtaa aacatactaa acctagttcc cacctcagtg
     1141 tgcttcaggg aggacataac agtaggcatc tcaacatgca gcaggatcag aagcctgtgc
     1201 agccttgtct tggaccccgg acatcatgca ttctgcaaaa atcaagagcc ataagccaga
     1261 ggcctaattt gatgactggc gactttaact cagtcattcc aagcacacct aacataagag
     1321 caaataaaac acttaacagt aagtacagta gcacgtttca acagaaagca cagacagtgg
     1381 actccaagtt caaaaggttt cctccccaga gccattttct gaacaagact gctcccagga
     1441 ctcaagccag taccacagcc gcaagtagga agggagcccc gagcgtgacc cagactcacc
     1501 cacatgttaa aaaaccagaa ggagaggatc ggaggaaaca gctggaagaa tggcagaaat
     1561 ctaaagggaa aacctataaa cggcctccca tgatatttaa aacaagaaga aaagtcatag
     1621 aggaaatgaa cacctccttc tggaagagca ttgaaagaga agaagaagag aagacagctc
     1681 agctggagct gtccaggaaa atcaacagca ctctgacaga gtgtctgagg ctcattgaag
     1741 agggtgtact tcctaatgaa atatttaccg tagtgtccag cattcctgag gctgaaaaat
     1801 ttgccaagtt ctgggtgtgc aaagcaaagt tactggcaag taaaggcccc ttcgatgctc
     1861 ttggactgta tgaagaggcc attcagaacg gggcagcacc aatacaggag ctgcaggaag
     1921 ttctgaacat tctgcaagac acaagcagaa gcgcagaagc agtcacctct gacagctcag
     1981 ctgcgggaac caataccaca tctgcggaag agctggccaa ggaggacgac tctgagcagc
     2041 cttgcccacc gctgatagaa agggagcggg ccccagcagc acctcggata cccatggtgg
     2101 agtgggataa ccccggtatc aaattacagg ttgccccgat ccctagaata tgcgggatgc
     2161 cagaagtgca agacatgaag ctcatcactc ctgtgaggcg ctcggcaagg atcgagcgca
     2221 cactggcgag ctacccagaa atgctgcagg agcgtgacat agtcgtggcc tctcttaacg
     2281 agctcctgga agtggacaac acagagtgct ttgtcttccg tgaaaatgag gctctgcctg
     2341 tgacactggg cttcgaaatc cttgaatcat gatcttttga tatttggtgt ttttgttttt
     2401 tgtttttttt tattttaaat gagttttttt tttttttttt tttttttttt tttttttttt
     2461 tttttagggc ttgcccgaca taaatgccct tgtcttgatg acctgaaata aatgtatgtt
     2521 gaatccccac gatgcagacg atagactctt gggtctcaga agtaaggcat tgggtttact
     2581 ctcacagcat acatccccaa gagaactctt ggttcatgtg tttgttatat actttatgat
     2641 agttttacag catgcataac ttcaggatac cgaatattaa tttatgtcaa ctgtaataga
     2701 aaaaagaagc tcacactttg ctcatctgct ataatcctat tgtgatcatt ctttgtaccc
     2761 aaaggttggt gctgtggtgt gactgacttt cagcatccgc ccttccctgg agggtggttc
     2821 ctagaataca aagatctgac ttttgacacc agctccccag gctggaaagt aaaactccac
     2881 acgttacaga gaagttggga ctagccacat cttcacttct ctctgtggag acctttgact
     2941 tcttcacagt gaccctagag atgagggtga cacatgtcct ctctgggcgg gtttcctcta
     3001 gtgaagcaca atccagaact gaggtggcag ccaggttcat ttgcagtcct ccttttgcac
     3061 ttgtcattca gaaatgcctc aagtacagac aaggttgtag ggacagaagt gctgcatgca
     3121 ttcccttctc tgccagtgga tttgtagcct aaggaggcca tgagcgcccc agagaccatg
     3181 gcggggcttt tttttttttc ctgcaccttg agcaaactaa ctgttcttag atggaaaaac
     3241 agagttgttt tgtaaatata atgtatagaa aaggctagtc agcacatttt taaatcttag
     3301 ctttgttact atgattgcta agtactaagt aatacctaaa ataaaaaccc ctgaatatct
     3361 gttca
//
