LOCUS       NM_001169139            2549 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus cytoskeleton associated protein 2 (Ckap2), mRNA.
ACCESSION   NM_001169139 XM_001073489 XM_224970
VERSION     NM_001169139.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Jakobsen,L., Vanselow,K., Skogs,M., Toyoda,Y., Lundberg,E.,
            Poser,I., Falkenby,L.G., Bennetzen,M., Westendorf,J., Nigg,E.A.,
            Uhlen,M., Hyman,A.A. and Andersen,J.S.
  TITLE     Novel asymmetrically localizing components of human centrosomes
            identified by complementary proteomics methods
  JOURNAL   EMBO J 30 (8), 1520-1535 (2011)
   PUBMED   21399614
REFERENCE   2  (bases 1 to 2549)
  AUTHORS   Tsuchihara,K., Lapin,V., Bakal,C., Okada,H., Brown,L.,
            Hirota-Tsuchihara,M., Zaugg,K., Ho,A., Itie-Youten,A.,
            Harris-Brandts,M., Rottapel,R., Richardson,C.D., Benchimol,S. and
            Mak,T.W.
  TITLE     Ckap2 regulates aneuploidy, cell cycling, and cell death in a
            p53-dependent manner
  JOURNAL   Cancer Res 65 (15), 6685-6691 (2005)
   PUBMED   16061649
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1, EV774137.1, CK596035.1 and EV778235.1.
            
            On or before Dec 17, 2009 this sequence version replaced
            XM_224970.4, XM_001073489.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.75766.1,
                                           SRR26643292.56500.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-41                JAXUCZ010000016.1  76542114-76542154
            42-839              EV774137.1         24-821
            840-1428            CK596035.1         78-666
            1429-1795           EV778235.1         388-754
            1796-2549           JAXUCZ010000016.1  76566542-76567295
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.5"
     gene            1..2549
                     /gene="Ckap2"
                     /note="cytoskeleton associated protein 2"
                     /db_xref="GeneID:306575"
                     /db_xref="RGD:1311631"
     CDS             1..2031
                     /gene="Ckap2"
                     /codon_start=1
                     /product="cytoskeleton-associated protein 2"
                     /protein_id="NP_001162610.1"
                     /db_xref="GeneID:306575"
                     /db_xref="RGD:1311631"
                     /translation="MAESRKRSLGRPARSTLRVPRDLQLPPTKRDQPAFREQRKEKLK
                     EYLLIRKTTFPYKQENQISRDQKMVTSEDQVQEGKKVVKLKTEVADKENIGSIVEKNC
                     VPLKAEEVASSETHHPKGDVQAVQLLSTGADFPGQPVMLDQACHHKDSAGTQVTAEKT
                     KQDTNMSKKRVLGYYHGQIVQSKINSFRKLPSVKDESLAATKKLPTTVSKARKAHIEP
                     GKAVSVRASNTAAATRSTDTNSGSALSKNTLVRPPIRSLHSRTHGGTLGAVKQGLGGT
                     LDSVTVRKESLEKESHRPEPVMSVVKTSSSQDTKRGKAPPRSIACKDVTRTNSSNARL
                     TGKSRDPDQRRYTIAGAAVLRSAQPKDTTADRKAQMTDWRTGKGKGLKRPPHSEVTQA
                     EPKRQNENAVGSFWTTMAEEDEQRLFTEKVNKTISECLNLINKGCPKEEILATLNDLI
                     HNIPDAKKLVKYWICLVRIEPITSPIENIISIYEKAILAGAQPIEEMRHIIIDILTTK
                     NQEKANLGENIEEAHATKEHIQEVNVETNLGSGKPEEENEHHRKVEVYEDNQDSKTED
                     PTNDLTTPDSKAEAGCLIRYNVSSTPRLQSMKKTQHDKNSTFKELKFLTPVRRSRRIQ
                     EKTLRLPDMLKDHDPSVSSLEQLSELGGDAFVCRPNAALCPLFCETDVVEEE"
     exon            1..109
                     /gene="Ckap2"
                     /inference="alignment:Splign:2.1.0"
     exon            110..191
                     /gene="Ckap2"
                     /inference="alignment:Splign:2.1.0"
     exon            192..264
                     /gene="Ckap2"
                     /inference="alignment:Splign:2.1.0"
     exon            265..1100
                     /gene="Ckap2"
                     /inference="alignment:Splign:2.1.0"
     exon            1101..1305
                     /gene="Ckap2"
                     /inference="alignment:Splign:2.1.0"
     exon            1306..1476
                     /gene="Ckap2"
                     /inference="alignment:Splign:2.1.0"
     exon            1477..1546
                     /gene="Ckap2"
                     /inference="alignment:Splign:2.1.0"
     exon            1547..1787
                     /gene="Ckap2"
                     /inference="alignment:Splign:2.1.0"
     exon            1788..2549
                     /gene="Ckap2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcagagt ccaggaaacg ctcccttggc cggcctgcga ggagtacctt gcgggttcct
       61 cgggacctgc agctgccccc gaccaagaga gaccagccgg ccttcagaga acaaagaaaa
      121 gaaaaactca aggaatatct gttaatacga aaaacaacgt ttccatacaa acaagagaat
      181 cagatatcca gagatcagaa aatggtgaca tctgaggatc aggtccaaga agggaaaaaa
      241 gttgtgaaac tcaaaacaga agtggctgat aaagaaaata ttggaagtat agttgaaaaa
      301 aactgcgttc cattaaaggc tgaagaagta gccagctcag aaacgcacca cccaaagggt
      361 gatgtgcaag ccgtgcagct gttatccacc ggagcggatt tcccaggtca gcccgtgatg
      421 ttagaccagg cttgtcacca taaagacagt gcagggacgc aagtgacggc agagaagacg
      481 aagcaagaca ctaacatgtc taaaaaacga gtgcttggct attatcacgg ccagattgtt
      541 cagtctaaga tcaattcatt cagaaagctt cccagtgtca aagacgagag tctcgcagca
      601 accaagaaac tccccactac tgtgtctaaa gccaggaagg ctcacattga gcctgggaag
      661 gccgtcagtg tcagagcctc aaatacagct gctgccacca ggtctacaga cactaactcc
      721 gggagcgcct tgtccaagaa cacacttgtg cgaccaccta tccgaagtct ccacagtaga
      781 acccacggcg ggaccctcgg tgctgtgaag caaggcctcg gcgggaccct tgacagtgtt
      841 acagtcagaa aagagtcgct tgaaaaggag tcacatcgac cagaaccggt catgtctgtt
      901 gtcaaaacca gttcttctca ggacacaaaa agaggcaagg ccccaccaag aagcatagca
      961 tgtaaagatg taaccaggac taactcatct aatgccaggc tgacaggaaa gtccagagat
     1021 cctgaccagc gcagatacac gatcgcagga gcggctgtcc ttagatcagc tcagcccaaa
     1081 gataccacag cagacaggaa agctcagatg accgactgga gaactggcaa agggaagggg
     1141 ctaaaaaggc ctcctcattc agaggtcacc caggctgagc ccaagagaca aaacgaaaac
     1201 gcagttgggt ccttttggac caccatggca gaagaagacg agcagagatt attcactgaa
     1261 aaagtaaaca aaacgatttc tgagtgcctg aacctcatta ataagggatg cccaaaagaa
     1321 gaaattttag ctacactgaa tgacctgatt cataatattc cagatgccaa gaaacttgtt
     1381 aaatattgga tatgtcttgt acgtattgaa ccaatcacaa gtcctattga aaatattatt
     1441 tcaatctacg agaaggccat tctggcaggg gctcagccta ttgaagagat gcgacatata
     1501 atcatagata ttctaacaac gaagaatcaa gaaaaagcca atttgggaga aaatattgag
     1561 gaggctcatg caaccaagga acatatccaa gaagtaaatg ttgaaactaa tctcgggtca
     1621 ggaaaaccag aagaggagaa tgaacatcat agaaaagttg aggtttacga agacaatcag
     1681 gacagcaaaa cagaagatcc aaccaatgat ctaacaaccc cagactcaaa agccgaggca
     1741 ggttgcctga ttcgatataa tgtatcttct acaccacgct tgcaaagtat gaaaaagacg
     1801 caacatgata aaaattccac atttaaagag ctaaagtttc tgacacccgt gagacgttcg
     1861 cgccgcattc aagagaagac tttacgactg ccagacatgt taaaagacca tgacccttcc
     1921 gtgtcttccc tggagcagtt gtcggagttg ggaggggatg cttttgtttg ccgccctaat
     1981 gcagccctgt gccctctgtt ctgtgagacc gacgtcgtgg aggaggaata gcactcctga
     2041 ggcctcagca gttatggttg ccttgtgtac aactttacaa taggtctgat gctgtctgca
     2101 tgcctaagta tgatacaggt gaacaccaat agcctgttta ttgtgtttta aaaatatgtt
     2161 agctatttca ctttactaac tactttccgt aaagaagcgt aatcagaaaa cgtagcctat
     2221 ataaatttat atttttacat tgactttgtt cctaatatgt ttataataaa tatgtgtgta
     2281 taaatatgta tgatgttcca atgacatttc attaattgag tgacttattt aacgatggaa
     2341 ctgactttag gacccaactg tggggctgta gccagctgcc tatggcgttt atttcaacaa
     2401 atatgttctg gggctctcag atgtgctcct agtagagcac ttgcctaatg tacaaggccc
     2461 tggatctagt ccttagcacc acaagaaaaa ctactttgta aaatgtcctt taaccacagt
     2521 aaccaaatat aaacttagtt tttgaaata
//
